Running boltz directly seems to give completely incorrect results regarding structure and affinity. Using a template doesn't help. I'm able to use boltz in YASARA and get more accurate looking results so I'm not sure what the issue is.

The affinity example protein folded through boltz in YASARA

Same structure folded through boltz directly
Running boltz directly seems to give completely incorrect results regarding structure and affinity. Using a template doesn't help. I'm able to use boltz in YASARA and get more accurate looking results so I'm not sure what the issue is.