Create indexes and files containing these indexes for ee2 queries #413
Description
I'd just set them up in MongoUtil. That's more or less how I do it for all my servers, for example https://github.com/kbase/groups/blob/master/src/us/kbase/groups/storage/mongo/MongoGroupsStorage.java#L334-L356
Originally posted by @MrCreosote in #412 (comment)