Input file and usage

[marcregow]

Hi, is it possible to use bam files as input?

Thanks in advance!

[chriscrsmith]

Hi @marcregow !

We currently require a VCF as input with SNPs carefully preprocessed and curated to represent confident SNP calls.

Thank you for the question—I need to update the docs to describe the input better.

[marcregow]

Hi! Oh I see. I also wanted to ask if you have tested the limit of low quality samples and if so, what would that value be? Thanks so much! Mar.

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On Wed, 15 May 2024, 18:33 Chris Smith, ***@***.***> wrote: Hi @marcregow <https://github.com/marcregow> ! We currently require a VCF as input with SNPs carefully preprocessed and curated to represent confident SNP calls. Thank you for the question—I need to update the docs to describe the input better. — Reply to this email directly, view it on GitHub <#2 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AK2N65SYAHV5SODQENGHWYTZCOE4LAVCNFSM6AAAAABHYEMXCKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMJSHE4TCMJTHE> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[chriscrsmith]

No we haven't tested low quality samples. That's another good idea to keep on the to-do list.