elocation R_X86_64_PC32 against symbol `stdout@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC

[dm8000]

Hello Khraim

I am trying to install the package, I already compiled FFTW. I am not sure how I could recompile this with -fPIC so I'm not sure how to proceed.

> install.packages("fftwtools")
Installing package into ‘/home/dmoraes/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/fftwtools_0.9-11.tar.gz'
Content type 'application/x-gzip' length 174321 bytes (170 KB)
==================================================
downloaded 170 KB

* installing *source* package ‘fftwtools’ ...
** package ‘fftwtools’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for pkg-config... yes
configure: creating ./config.status
config.status: creating src/Makevars

fftwtools 0.9-10
================

compiler flags: -I/usr/local/include 
link argument:  -L/usr/local/lib -lfftw3 

** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/local/include        -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-tRgc13/r-base-4.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c fftwtools.c -o fftwtools.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/local/include        -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-tRgc13/r-base-4.0.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c fftwtools_init.c -o fftwtools_init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fftwtools.so fftwtools.o fftwtools_init.o -L/usr/local/lib -lfftw3 -L/usr/lib/R/lib -lR
/usr/bin/ld: /usr/local/lib/libfftw3.a(assert.o): relocation R_X86_64_PC32 against symbol `stdout@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make: *** [/usr/share/R/share/make/shlib.mk:10: fftwtools.so] Error 1
ERROR: compilation failed for package ‘fftwtools’
* removing ‘/home/dmoraes/R/x86_64-pc-linux-gnu-library/4.0/fftwtools’
Warning in install.packages :
  installation of package ‘fftwtools’ had non-zero exit status

The downloaded source packages are in
	‘/tmp/RtmpePbCJF/downloaded_packages’