From 79398de07a0e4e954794474bcb2b8b27cce747ee Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Fri, 7 Nov 2025 10:04:59 +0100 Subject: [PATCH 1/9] refactor(SegmentOverview)!: Add heartrate, power, and cadence. Restruture model (#31) --- geo_track_analyzer/model.py | 49 +++++++++++++++++++++++-------------- geo_track_analyzer/track.py | 31 ++++++++++++++++++++--- tests/test_model.py | 15 +++++++++--- tests/test_track.py | 10 ++++++++ 4 files changed, 80 insertions(+), 25 deletions(-) diff --git a/geo_track_analyzer/model.py b/geo_track_analyzer/model.py index e2b5a86..a9be71c 100644 --- a/geo_track_analyzer/model.py +++ b/geo_track_analyzer/model.py @@ -1,4 +1,4 @@ -from typing import Annotated +from typing import Annotated, Generic, TypeVar import numpy as np from gpxpy.gpx import GPXTrackPoint @@ -14,6 +14,8 @@ from geo_track_analyzer.utils.internal import GPXTrackPointAfterValidator +T = TypeVar("T") + class Model(BaseModel): model_config = ConfigDict(extra="forbid") @@ -49,6 +51,13 @@ class ElevationMetrics(Model): """Slopes between points in a uphill/downhill section""" +class SegmentOverviewMetric(Model, Generic[T]): + """Collection max/average metric in a segement""" + + max: T + avg: T + + class SegmentOverview(Model): """Collection of metrics for a Segment""" @@ -64,12 +73,8 @@ class SegmentOverview(Model): total_distance: float """Total distance of the segment in m""" - max_velocity: None | float - """Maximum velocity in the segment in m/s (only considering velocities below the XX - percentile)""" - - avg_velocity: None | float - """Average velocity in the segment in m/s (only considering velocities below the XX + velocity: SegmentOverviewMetric[float] | None + """Velocity in the segment in m/s (only considering velocities below the XX percentile)""" max_elevation: None | float @@ -84,6 +89,15 @@ class SegmentOverview(Model): downhill_elevation: None | float """Elevation traveled downhill in m""" + heartrate: SegmentOverviewMetric[int] | None = Field(default=None) + """ Heartrate metrics in bpm""" + + power: SegmentOverviewMetric[int] | None = Field(default=None) + """ Power metrics in watts""" + + cadence: SegmentOverviewMetric[int] | None = Field(default=None) + """ Cadence metrics in rpm""" + # Attributes that will be calculated from primary attributes moving_distance_km: float = Field(default=-1) """moving_distance converted the km""" @@ -91,21 +105,20 @@ class SegmentOverview(Model): total_distance_km: float = Field(default=-1) """total_distance converted the km""" - max_velocity_kmh: None | float = Field(default=None) - """max_velocity converted the km/h""" - - avg_velocity_kmh: None | float = Field(default=None) - """avg_speed converted the km/h""" + velocity_kmh: SegmentOverviewMetric[None | float] | None = Field(default=None) + """ Velocity in the segment in km/h """ @model_validator(mode="after") # type: ignore def set_km_attr(self) -> "SegmentOverview": self.moving_distance_km = self.moving_distance / 1000 self.total_distance_km = self.total_distance / 1000 - self.max_velocity_kmh = ( - None if self.max_velocity is None else 3.6 * self.max_velocity - ) - self.avg_velocity_kmh = ( - None if self.avg_velocity is None else 3.6 * self.avg_velocity + self.velocity_kmh = ( + SegmentOverviewMetric( + max=3.6 * self.velocity.max, + avg=3.6 * self.velocity.avg, + ) + if self.velocity is not None + else None ) return self @@ -135,7 +148,7 @@ class SegmentOverlap(Model): """Index of the last point in match segment""" def __repr__(self) -> str: - ret_str = f"Overlap {self.overlap*100:.2f}%, Inverse: {self.inverse}," + ret_str = f"Overlap {self.overlap * 100:.2f}%, Inverse: {self.inverse}," ret_str += f" Plate: {self.plate.shape}, Points: " point_strs = [] for point, idx in zip( diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index ba3e85c..6a5f834 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -21,7 +21,13 @@ TrackTransformationError, VisualizationSetupError, ) -from geo_track_analyzer.model import PointDistance, Position3D, SegmentOverview, Zones +from geo_track_analyzer.model import ( + PointDistance, + Position3D, + SegmentOverview, + SegmentOverviewMetric, + Zones, +) from geo_track_analyzer.processing import ( get_processed_segment_data, get_processed_track_data, @@ -285,6 +291,10 @@ def _create_segment_overview( uphill = None downhill = None + if (max_speed is None and avg_speed is not None) or ( + max_speed is not None and avg_speed is None + ): + raise RuntimeError("You need to passed max and avg speed or none") if not data.elevation.isna().all(): max_elevation = data.elevation.max() min_elevation = data.elevation.min() @@ -301,18 +311,33 @@ def _create_segment_overview( uphill = elevation_metrics.uphill downhill = elevation_metrics.downhill + overview_metrics = {} + for metric in ["heartrate", "cadence", "power"]: + overview_metrics[metric] = None + if metric in data.columns and not data[metric].isna().all(): + overview_metrics[metric] = SegmentOverviewMetric[int]( + max=int(round(data[metric].max(), 0)), + avg=int(round(data[metric].mean(), 0)), + ) return SegmentOverview( moving_time_seconds=time, total_time_seconds=total_time, moving_distance=distance, total_distance=total_distance, - max_velocity=max_speed, - avg_velocity=avg_speed, + velocity=SegmentOverviewMetric[float]( + max=max_speed, + avg=avg_speed, # type: ignore + ) + if max_speed is not None + else None, max_elevation=max_elevation, min_elevation=min_elevation, uphill_elevation=uphill, downhill_elevation=downhill, + cadence=overview_metrics["cadence"], + power=overview_metrics["power"], + heartrate=overview_metrics["heartrate"], ) def get_closest_point( diff --git a/tests/test_model.py b/tests/test_model.py index 68ea7b7..ceb413f 100644 --- a/tests/test_model.py +++ b/tests/test_model.py @@ -13,6 +13,7 @@ PointDistance, SegmentOverlap, SegmentOverview, + SegmentOverviewMetric, ZoneInterval, Zones, ) @@ -36,17 +37,23 @@ def test_segment_overview_post_init_calcs() -> None: total_time_seconds=1000, moving_distance=moving_distance, total_distance=total_distance, - max_velocity=max_speed, - avg_velocity=avg_speed, + velocity=SegmentOverviewMetric( + max=max_speed, + avg=avg_speed, + ), max_elevation=300, min_elevation=100, uphill_elevation=100, downhill_elevation=-200, ) - assert so.max_velocity_kmh == max_speed * 3.6 - assert so.avg_velocity_kmh == avg_speed * 3.6 + assert so.velocity_kmh is not None + assert so.velocity_kmh.max == max_speed * 3.6 + assert so.velocity_kmh.avg == avg_speed * 3.6 assert so.moving_distance_km == moving_distance / 1000 assert so.total_distance_km == total_distance / 1000 + assert so.cadence is None + assert so.heartrate is None + assert so.power is None def test_point_distance_init() -> None: diff --git a/tests/test_track.py b/tests/test_track.py index b5071f8..dc5ce5f 100644 --- a/tests/test_track.py +++ b/tests/test_track.py @@ -413,6 +413,16 @@ def test_track_overiew( assert track_overview_pre_add != track_overview_post_add +def test_track_over_extensions( + track_for_test: Track, +) -> None: + overview = track_for_test.get_track_overview() + + assert overview.heartrate is not None + assert overview.cadence is not None + assert overview.power is not None + + @pytest.mark.parametrize("conn_segments", ["forward", "full"]) def test_track_data( mocker: MockerFixture, From 37e7a1f135cc3ec563ba38cc25685237518806cd Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Sat, 8 Nov 2025 09:46:38 +0100 Subject: [PATCH 2/9] refactor!: Make plotting code an extra (#30) --- .github/workflows/test.yml | 4 +- geo_track_analyzer/processing.py | 19 ++++++++- geo_track_analyzer/track.py | 6 ++- geo_track_analyzer/visualize/__init__.py | 50 +++++++++++++++++------- pyproject.toml | 2 +- 5 files changed, 59 insertions(+), 22 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 985d227..19b1876 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -24,10 +24,10 @@ jobs: with: python-version: 3.12 - name: Install the project - run: uv sync --no-group dev --no-group doc --no-cache + run: uv sync --no-group dev --no-group doc --no-cache --extra visualization - name: pytest run: | - uv run --no-group dev --no-group doc pytest + uv run --no-group dev --no-group doc --extra visualization pytest test-all: name: ${{ matrix.os }} / ${{ matrix.python-version }} runs-on: ${{ matrix.os }}-latest diff --git a/geo_track_analyzer/processing.py b/geo_track_analyzer/processing.py index 42ed2cb..cca06cf 100644 --- a/geo_track_analyzer/processing.py +++ b/geo_track_analyzer/processing.py @@ -5,7 +5,6 @@ import numpy as np import pandas as pd -import plotly from gpxpy.gpx import GPXTrack, GPXTrackPoint, GPXTrackSegment from geo_track_analyzer.exceptions import GPXPointExtensionError @@ -454,7 +453,23 @@ def add_zones_to_dataframe( ) -> pd.DataFrame: zone_bins, names, zone_colors = format_zones_for_digitize(zones) if zone_colors is None: - zone_colors = plotly.colors.sample_colorscale("viridis", len(names)) + try: + import plotly + except ModuleNotFoundError: + if len(names) > 8: + raise RuntimeError("Out of automatic colors for more than 8 zones") + zone_colors = [ + "#FF0000", + "#F71D1D", + "#EF3A3A", + "#E75656", + "#DF7373", + "#D78F8F", + "#CFABAB", + "#C7C7C7", + ][0 : len(names)] + else: + zone_colors = plotly.colors.sample_colorscale("viridis", len(names)) metric_data = data[metric][~data[metric].isna()] binned_metric = pd.Series( diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index 6a5f834..857c10d 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -6,14 +6,16 @@ from copy import copy from datetime import datetime from itertools import pairwise -from typing import Dict, Literal, Sequence, TypeVar, final +from typing import TYPE_CHECKING, Dict, Literal, Sequence, TypeVar, final import gpxpy import numpy as np import pandas as pd from fitparse import DataMessage, FitFile, StandardUnitsDataProcessor from gpxpy.gpx import GPX, GPXTrack, GPXTrackSegment -from plotly.graph_objs.graph_objs import Figure + +if TYPE_CHECKING: + from plotly.graph_objs.graph_objs import Figure from geo_track_analyzer.compare import get_segment_overlap from geo_track_analyzer.exceptions import ( diff --git a/geo_track_analyzer/visualize/__init__.py b/geo_track_analyzer/visualize/__init__.py index ec729de..6422927 100644 --- a/geo_track_analyzer/visualize/__init__.py +++ b/geo_track_analyzer/visualize/__init__.py @@ -1,18 +1,38 @@ -from .interactive import plot_track_3d -from .map import ( - plot_segments_on_map, - plot_track_enriched_on_map, - plot_track_line_on_map, - plot_tracks_on_map, -) -from .metrics import plot_metrics -from .profiles import plot_track_2d, plot_track_with_slope -from .summary import ( - plot_segment_box_summary, - plot_segment_summary, - plot_segment_zones, - plot_track_zones, -) +try: + import plotly # noqa: F401 +except ModuleNotFoundError: + + def raise_err_func(*args, **kwargs) -> None: + raise RuntimeError("Install the visualization extra to use this functionality") + + plot_metrics = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_segment_box_summary = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_segment_summary = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_segment_zones = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_segments_on_map = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_2d = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_3d = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_enriched_on_map = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_line_on_map = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_with_slope = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_track_zones = lambda *args, **kwargs: raise_err_func(*args, **kwargs) + plot_tracks_on_map = lambda *args, **kwargs: raise_err_func(*args, **kwargs) +else: + from .interactive import plot_track_3d + from .map import ( + plot_segments_on_map, + plot_track_enriched_on_map, + plot_track_line_on_map, + plot_tracks_on_map, + ) + from .metrics import plot_metrics + from .profiles import plot_track_2d, plot_track_with_slope + from .summary import ( + plot_segment_box_summary, + plot_segment_summary, + plot_segment_zones, + plot_track_zones, + ) __all__ = [ "plot_metrics", diff --git a/pyproject.toml b/pyproject.toml index ca34648..def5613 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -29,7 +29,6 @@ dependencies = [ "numpy>=1,<2", "gpxpy~=1.6", "requests>=2,<3", - "plotly>=5,<6", "pandas>=2,<3", "fitparse~=1.2", "pydantic>=2,<3", @@ -49,6 +48,7 @@ enhance-elevation = 'geo_track_analyzer:update_elevation' cli = ["click>=8,<9", "rich"] postgis = ["SQLAlchemy"] full = ["geo-track-analyzer[cli,postgis]", "psycopg"] +visualization = ["plotly>=5,<6"] [tool.pytest.ini_options] testpaths = ["tests/"] From a514bce492d26b7671bb3569f2acfe6b0ad2b094 Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Sat, 8 Nov 2025 12:14:00 +0100 Subject: [PATCH 3/9] doc: Update documentation for visualizations and model --- docs/api_model.md | 3 +- docs/generate_comparison_examples.py | 14 + docs/usage.md | 6 + docs/vis_profiles_and_maps.md | 4 + docs/vis_summaries.md | 4 + geo_track_analyzer/model.py | 12 +- requirements/prod.txt | 69 ---- uv.lock | 452 +++++++++++++++------------ 8 files changed, 285 insertions(+), 279 deletions(-) create mode 100644 docs/generate_comparison_examples.py delete mode 100644 requirements/prod.txt diff --git a/docs/api_model.md b/docs/api_model.md index 93c299a..f21a3c6 100644 --- a/docs/api_model.md +++ b/docs/api_model.md @@ -5,6 +5,7 @@ ::: geo_track_analyzer.model.Position2D ::: geo_track_analyzer.model.Position3D ::: geo_track_analyzer.model.ElevationMetrics +::: geo_track_analyzer.model.SegmentOverviewMetric ::: geo_track_analyzer.model.SegmentOverview ::: geo_track_analyzer.model.SegmentOverlap ::: geo_track_analyzer.model.PointDistance @@ -12,4 +13,4 @@ ## Other model objects ::: geo_track_analyzer.model.ZoneInterval -::: geo_track_analyzer.model.Zones \ No newline at end of file +::: geo_track_analyzer.model.Zones diff --git a/docs/generate_comparison_examples.py b/docs/generate_comparison_examples.py new file mode 100644 index 0000000..610a6c9 --- /dev/null +++ b/docs/generate_comparison_examples.py @@ -0,0 +1,14 @@ +from geo_track_analyzer.track import GPXFileTrack +from geo_track_analyzer.utils.base import init_logging + +if __name__ == "__main__": + init_logging(10) + + track = GPXFileTrack( + "../tests/resources/Freiburger_Münster_nach_Schau_Ins_Land.gpx" + ) + track_sub = GPXFileTrack("../tests/resources/Teilstueck_Schau_ins_land.gpx") + + overlap_info = track.find_overlap_with_segment(0, track_sub, 0) + + print(overlap_info) diff --git a/docs/usage.md b/docs/usage.md index 247d7f8..bb368b2 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -88,6 +88,12 @@ Furthermore an summary of the segments and tracks can be generated in the form o ### Visualizing the track +???+ warning "Warning" + + Starting from version 2.0.0, the visualizations requires the installation of the `visualization` extra (or you have plotly in your dependencies anyways). + + + Visualizations of a track can be generated via the [`Track.plot`][geo_track_analyzer.GPXFileTrack.plot] method via the `kind` parameter. Additionally the track data can be extracted with the [`Track.get_track_data`][geo_track_analyzer.GPXFileTrack.get_track_data] or [`Track.get_segment_data`][geo_track_analyzer.GPXFileTrack.get_segment_data] methods and using the functions described in the [Profiles and Maps](vis_profiles_and_maps.md) and [Summaries](vis_summaries.md). diff --git a/docs/vis_profiles_and_maps.md b/docs/vis_profiles_and_maps.md index a67ece9..92f4da1 100644 --- a/docs/vis_profiles_and_maps.md +++ b/docs/vis_profiles_and_maps.md @@ -1,5 +1,9 @@ # Track visualization - Profiles and Maps +???+ note "Extra" + + Not all dependencies for the visualizations are installed by default. Please use the `visualization` extra during installation. + All visualizations are implemented using the [Plotly Graphing Library](https://plotly.com/python/). All methods and functions return a [Figure](https://plotly.com/python-api-reference/generated/plotly.graph_objects.Figure.html#id0>) objects to enable additonal customization of the plot outside of the package e.g. using the `update_layout` method. ## Elevations profiles diff --git a/docs/vis_summaries.md b/docs/vis_summaries.md index eabc56a..38257e8 100644 --- a/docs/vis_summaries.md +++ b/docs/vis_summaries.md @@ -1,5 +1,9 @@ # Track visualization - Summaries +???+ warning "Extra" + + Starting from 2.0.0: Not all dependencies for the visualizations are installed by default. Please use the `visualization` extra during installation. + ## Segment summaries diff --git a/geo_track_analyzer/model.py b/geo_track_analyzer/model.py index a9be71c..c6b46af 100644 --- a/geo_track_analyzer/model.py +++ b/geo_track_analyzer/model.py @@ -55,7 +55,10 @@ class SegmentOverviewMetric(Model, Generic[T]): """Collection max/average metric in a segement""" max: T + """ Maximum value of the metric """ + avg: T + """ Average value of the metric""" class SegmentOverview(Model): @@ -74,8 +77,7 @@ class SegmentOverview(Model): """Total distance of the segment in m""" velocity: SegmentOverviewMetric[float] | None - """Velocity in the segment in m/s (only considering velocities below the XX - percentile)""" + """Velocity in the segment in m/s (only considering velocities below the XX percentile). Saved as [`SegmentOverviewMetric`][geo_track_analyzer.model.SegmentOverviewMetric]""" # noqa: E501 max_elevation: None | float """Maximum elevation in the segment in m""" @@ -90,13 +92,13 @@ class SegmentOverview(Model): """Elevation traveled downhill in m""" heartrate: SegmentOverviewMetric[int] | None = Field(default=None) - """ Heartrate metrics in bpm""" + """ Heartrate metrics in bpm. Saved as [`SegmentOverviewMetric`][geo_track_analyzer.model.SegmentOverviewMetric] """ # noqa: E501 power: SegmentOverviewMetric[int] | None = Field(default=None) - """ Power metrics in watts""" + """ Power metrics in watts. Saved as [`SegmentOverviewMetric`][geo_track_analyzer.model.SegmentOverviewMetric] """ # noqa: E501 cadence: SegmentOverviewMetric[int] | None = Field(default=None) - """ Cadence metrics in rpm""" + """ Cadence metrics in rpm. Saved as [`SegmentOverviewMetric`][geo_track_analyzer.model.SegmentOverviewMetric] """ # noqa: E501 # Attributes that will be calculated from primary attributes moving_distance_km: float = Field(default=-1) diff --git a/requirements/prod.txt b/requirements/prod.txt deleted file mode 100644 index 2c7e609..0000000 --- a/requirements/prod.txt +++ /dev/null @@ -1,69 +0,0 @@ -annotated-types==0.7.0 - # via pydantic -certifi==2025.1.31 - # via requests -charset-normalizer==3.4.1 - # via requests -click==8.1.8 - # via geo-track-analyzer (pyproject.toml) -compress-pickle==2.1.0 - # via pydantic-numpy -fitparse==1.2.0 - # via geo-track-analyzer (pyproject.toml) -gpxpy==1.6.2 - # via geo-track-analyzer (pyproject.toml) -idna==3.10 - # via requests -lz4==4.4.3 - # via compress-pickle -markdown-it-py==3.0.0 - # via rich -mdurl==0.1.2 - # via markdown-it-py -numpy==1.26.4 - # via - # geo-track-analyzer (pyproject.toml) - # pandas - # pydantic-numpy -packaging==24.2 - # via plotly -pandas==2.2.3 - # 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Jan 2026 22:07:32 +0100 Subject: [PATCH 6/9] =?UTF-8?q?feat:=20=F0=9F=97=BA=EF=B8=8F=20Add=20GeoJS?= =?UTF-8?q?ON=20track=20support=20(#35)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - ➕ Implement GeoJsonTrack class supporting LineString and FeatureCollection formats - 📊 Add cum_time_stopped column to track stopped duration separately from moving time - 🔧 Refactor cumulative time calculation to independently track moving vs stopped periods - 🛡️ Handle edge case where all points are stationary by interpreting as moving - 📝 Add comprehensive GeoJSON schema validation with Pydantic discriminated unions --- .pre-commit-config.yaml | 4 +- geo_track_analyzer/exceptions.py | 12 + geo_track_analyzer/processing.py | 40 ++- geo_track_analyzer/track.py | 77 ++++- geo_track_analyzer/utils/geojson.py | 268 ++++++++++++++++++ tests/resources/line_geo.json | 51 ++++ tests/resources/line_geo_multi_segment.json | 66 +++++ tests/resources/line_no_coords_geo.json | 31 ++ .../line_no_coords_geo_multi_segment.json | 36 +++ tests/resources/point_geo.json | 41 +++ tests/resources/point_no_coords_geo.json | 25 ++ tests/test_geo_json.py | 110 +++++++ tests/test_track.py | 44 ++- 13 files changed, 793 insertions(+), 12 deletions(-) create mode 100644 geo_track_analyzer/utils/geojson.py create mode 100644 tests/resources/line_geo.json create mode 100644 tests/resources/line_geo_multi_segment.json create mode 100644 tests/resources/line_no_coords_geo.json create mode 100644 tests/resources/line_no_coords_geo_multi_segment.json create mode 100644 tests/resources/point_geo.json create mode 100644 tests/resources/point_no_coords_geo.json create mode 100644 tests/test_geo_json.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 9d982ba..3b07127 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,12 +1,12 @@ repos: - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: "v0.11.5" + rev: "v0.14.10" hooks: - id: ruff args: [--fix, --exit-non-zero-on-fix, --output-format, concise] - id: ruff-format - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v6.0.0 hooks: - id: check-yaml - id: check-toml diff --git a/geo_track_analyzer/exceptions.py b/geo_track_analyzer/exceptions.py index fb09d47..5b568bf 100644 --- a/geo_track_analyzer/exceptions.py +++ b/geo_track_analyzer/exceptions.py @@ -40,3 +40,15 @@ class TrackAnalysisError(Exception): class VisualizationSetupWarning(Warning): pass + + +class GeoJsonWithoutGeometryError(Exception): + pass + + +class UnsupportedGeoJsonTypeError(Exception): + pass + + +class EmptyGeoJsonError(Exception): + pass diff --git a/geo_track_analyzer/processing.py b/geo_track_analyzer/processing.py index cca06cf..b73787b 100644 --- a/geo_track_analyzer/processing.py +++ b/geo_track_analyzer/processing.py @@ -21,24 +21,35 @@ def _recalc_cumulated_columns(data: pd.DataFrame) -> pd.DataFrame: data.cum_distance = data.distance.cumsum() cum_time_moving: list[None] | list[float] = [] + cum_time_stopped: list[None] | list[float] = [] cum_distance_moving = [] cum_distance_stopped = [] for idx, rcrd in enumerate(data.to_dict("records")): if idx == 0: if rcrd["time"] is None: cum_time_moving.append(None) # type: ignore + cum_time_stopped.append(None) # type: ignore else: - cum_time_moving.append(rcrd["time"] if rcrd["moving"] else 0) + if rcrd["moving"]: + cum_time_moving.append(rcrd["time"]) + cum_time_stopped.append(0) + else: + cum_time_moving.append(0) + cum_time_stopped.append(rcrd["time"]) cum_distance_moving.append(rcrd["distance"] if rcrd["moving"] else 0) cum_distance_stopped.append(0 if rcrd["moving"] else rcrd["distance"]) else: if rcrd["time"] is None: cum_time_moving.append(None) # type: ignore + cum_time_stopped.append(None) # type: ignore else: - cum_time_moving.append( - cum_time_moving[-1] + (rcrd["time"] if rcrd["moving"] else 0) - ) + if rcrd["moving"]: + cum_time_moving.append(cum_time_moving[-1] + rcrd["time"]) + cum_time_stopped.append(cum_time_stopped[-1]) + else: + cum_time_moving.append(cum_time_moving[-1]) + cum_time_stopped.append(cum_time_stopped[-1] + rcrd["time"]) cum_distance_moving.append( cum_distance_moving[-1] + (rcrd["distance"] if rcrd["moving"] else 0) @@ -48,6 +59,7 @@ def _recalc_cumulated_columns(data: pd.DataFrame) -> pd.DataFrame: ) data.cum_time_moving = cum_time_moving + data.cum_time_stopped = cum_time_stopped data.cum_distance_moving = cum_distance_moving data.cum_distance_stopped = cum_distance_stopped @@ -205,6 +217,7 @@ def get_processed_segment_data( "time": [], "cum_time": [], "cum_time_moving": [], + "cum_time_stopped": [], "cum_distance": [], "cum_distance_moving": [], "cum_distance_stopped": [], @@ -269,6 +282,7 @@ def _get_processed_data_w_time( cum_time = 0 cum_time_moving = 0 + cum_time_stopped = 0 cum_distance = 0 cum_moving = 0 @@ -284,8 +298,11 @@ def _get_processed_data_w_time( point_distance = point.distance_2d(previous) seconds = timedelta.total_seconds() - if seconds > 0 and point_distance is not None and point_distance: - is_stopped = (point_distance / seconds) <= threshold_ms + if seconds > 0 and point_distance is not None: + if point_distance: + is_stopped = (point_distance / seconds) <= threshold_ms + else: + is_stopped = True data["distance"].append(point_distance) @@ -319,10 +336,16 @@ def _get_processed_data_w_time( if not is_stopped: data["speed"].append(point_distance / seconds) cum_time_moving += seconds - data["cum_time_moving"].append(cum_time_moving) + # data["cum_time_moving"].append(cum_time_moving) + # data["cum_time_stopped"].append(None) else: data["speed"].append(None) - data["cum_time_moving"].append(None) + # data["cum_time_moving"].append(None) + cum_time_stopped += seconds + # data["cum_time_stopped"].append(cum_time_stopped) + + data["cum_time_moving"].append(cum_time_moving) + data["cum_time_stopped"].append(cum_time_stopped) for key in extensions: try: @@ -363,6 +386,7 @@ def _get_processed_data_wo_time( data["time"].append(None) data["cum_time"].append(None) data["cum_time_moving"].append(None) + data["cum_time_stopped"].append(None) data["cum_distance"].append(cum_distance) data["cum_distance_moving"].append(cum_distance) data["cum_distance_stopped"].append(None) diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index 857c10d..5e94531 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -1,10 +1,12 @@ from __future__ import annotations +import json import logging import warnings from abc import ABC, abstractmethod from copy import copy from datetime import datetime +from io import StringIO from itertools import pairwise from typing import TYPE_CHECKING, Dict, Literal, Sequence, TypeVar, final @@ -872,6 +874,13 @@ def plot( extensions=self.extensions, ) + # Special case if all points are stopped. Since we still want + # a plot, we interpret it as all moving. This is expected behaviour + # for tracks that all have the same lat/lon coordinates + if (data.moving == False).all(): # noqa: E712 + data.moving = True + data.cum_time_moving = data.cum_time_stopped + if use_distance_segments is not None: data = generate_distance_segments(data, use_distance_segments) @@ -1243,7 +1252,7 @@ def __init__( """Load a .fit file and extract the data into a Track object. NOTE: Tested with Wahoo devices only - :param source: Patch to fit file or byte representation of fit file + :param source: Path to fit file or byte representation of fit file :param stopped_speed_threshold: Minium speed required for a point to be count as moving, defaults to 1 :param max_speed_percentile: Points with speed outside of the percentile are not @@ -1398,3 +1407,69 @@ def __init__( @property def track(self) -> GPXTrack: return self._track + + +@final +class GeoJsonTrack(Track): + """Track that should be initialized by loading a .fit file""" + + def __init__( + self, + source: str | bytes, + stopped_speed_threshold: float = 1, + max_speed_percentile: int = 95, + allow_empty_spatial: bool = False, + fallback_coordinates: tuple[float, float] = (0.0, 0.0), + require_data_extensions: set[str] | None = None, + heartrate_zones: None | Zones = None, + power_zones: None | Zones = None, + cadence_zones: None | Zones = None, + ) -> None: + """Load a .json file that conforms to a supported geojson format. Currently + the GeoJsonTrack supports: + 1. LineString + Arrays + 2. Collection of Points + + :param source: Path or byte representation of the json file + :param stopped_speed_threshold: Minium speed required for a point to be count + as moving, defaults to 1 + :param max_speed_percentile: Points with speed outside of the percentile are not + counted when analyzing the track, defaults to 95 + :param allow_empty_spatial: Allow geojson files without spatial values. If true, + will generate the track with a fixed location (see. fallback_coordinates) + :param fallback_coordinates: Coordinates to be used if the geojson file + does not contain spatial data, defaults to (0.0, 0.0) + :param heartrate_zones: Optional heartrate Zones, defaults to None + :param power_zones: Optional power Zones, defaults to None + :param cadence_zones: Optional cadence Zones, defaults to None + """ + from geo_track_analyzer.utils.geojson import read_raw_data + + super().__init__( + stopped_speed_threshold=stopped_speed_threshold, + max_speed_percentile=max_speed_percentile, + require_data_extensions=require_data_extensions, + heartrate_zones=heartrate_zones, + power_zones=power_zones, + cadence_zones=cadence_zones, + ) + + if isinstance(source, str): + with open(source, "r") as f: + raw_data = json.load(f) + else: + with StringIO(source.decode("utf-8")) as f: + raw_data = json.load(f) + + _track = read_raw_data( + data=raw_data, + allow_empty_spatial=allow_empty_spatial, + fallback_coordinates=fallback_coordinates, + ) + + self._track = _track.track + self._update_extensions() + + @property + def track(self) -> GPXTrack: + return self._track diff --git a/geo_track_analyzer/utils/geojson.py b/geo_track_analyzer/utils/geojson.py new file mode 100644 index 0000000..03821ac --- /dev/null +++ b/geo_track_analyzer/utils/geojson.py @@ -0,0 +1,268 @@ +from datetime import datetime +from typing import Annotated, Literal + +from pydantic import BaseModel, Field + +from geo_track_analyzer import PyTrack, Track +from geo_track_analyzer.exceptions import ( + EmptyGeoJsonError, + GeoJsonWithoutGeometryError, + UnsupportedGeoJsonTypeError, +) + +Coordinates = tuple[float, float, float] + + +class LineStringGeometry(BaseModel): + type: Literal["LineString"] = "LineString" + coordinates: list[Coordinates] + + +class PointGeometry(BaseModel): + type: Literal["Point"] = "Point" + coordinates: Coordinates + + +Geometry = Annotated[LineStringGeometry | PointGeometry, Field(discriminator="type")] + + +class BaseProperties(BaseModel): + name: str | None = None + + +class PointProperties(BaseProperties): + time: datetime + heartrate: int | None = Field(default=None, alias="heartRate") + cadence: int | None = None + power: float | None = None + temperature: float | None = None + + +class LineProperties(BaseProperties): + times: list[datetime] = Field(alias="coordTimes") + heartrates: list[int | None] | None = Field(default=None, alias="heartRates") + cadences: list[int | None] | None = None + powers: list[float | None] | None = None + temperatures: list[float | None] | None = None + + +class PointFeature(BaseModel): + type: Literal["Feature"] = "Feature" + geometry: PointGeometry | None = None + properties: PointProperties + + +class LineFeature(BaseModel): + type: Literal["Feature"] = "Feature" + geometry: LineStringGeometry | None = None + properties: LineProperties + + +class PointCollection(BaseModel): + type: Literal["FeatureCollection"] = "FeatureCollection" + features: list[PointFeature] + properties: BaseProperties | None = None + + +class LineCollection(BaseModel): + type: Literal["FeatureCollection"] = "FeatureCollection" + features: list[LineFeature] + properties: BaseProperties | None = None + + +def _convert_points_collection( + data: dict, allow_empty_spatial: bool, fallback_coordinates: tuple[float, float] +) -> Track: + _data = PointCollection.model_validate(data) + + if not allow_empty_spatial and any(g.geometry is None for g in _data.features): + raise GeoJsonWithoutGeometryError("One or more features have no geometry") + + points = [] + elevations = [] + times = [] + extensions = dict( + heartrate=[], + power=[], + cadence=[], + temperature=[], + ) + + for feat in _data.features: + if allow_empty_spatial: + pass + lon, lat = fallback_coordinates + ele = None + else: + assert feat.geometry is not None + lon, lat, ele = feat.geometry.coordinates + points.append((lat, lon)) + elevations.append(ele) + times.append(feat.properties.time) + extensions["heartrate"].append(feat.properties.heartrate) + extensions["cadence"].append(feat.properties.cadence) + extensions["power"].append(feat.properties.power) + extensions["temperature"].append(feat.properties.temperature) + + track = PyTrack( + points=points, + elevations=None if allow_empty_spatial else elevations, + times=times, + extensions=extensions, # type: ignore + ) + + return track + + +def _cast_line_feature_to_data( + data: LineFeature, + allow_empty_spatial: bool, + fallback_coordinates: tuple[float, float], +) -> tuple[ + list[tuple[float, float]], list[float] | None, list[datetime], dict[str, list] +]: + if not allow_empty_spatial and data.geometry is None: + raise GeoJsonWithoutGeometryError("Geometry is missing") + + if not allow_empty_spatial and data.geometry is None: + raise GeoJsonWithoutGeometryError("Geometry is missing") + + _times = data.properties.times + if allow_empty_spatial: + _corrdinates = None + else: + assert data.geometry is not None + _corrdinates = data.geometry.coordinates + _heartrates = data.properties.heartrates + _cadences = data.properties.cadences + _powers = data.properties.powers + _temperatures = data.properties.temperatures + + if _corrdinates is not None and len(_corrdinates) != len(_times): + raise ValueError("Number of coordinates does not match number of timestamps") + if _heartrates and len(_times) != len(_heartrates): + raise ValueError("Number of coordinates does not match number of heartrates") + if _cadences and len(_times) != len(_cadences): + raise ValueError("Number of coordinates does not match number of cadences") + if _powers and len(_times) != len(_powers): + raise ValueError("Number of coordinates does not match number of powers") + if _temperatures and len(_times) != len(_temperatures): + raise ValueError("Number of coordinates does not match number of temperatures") + + points = [] + elevations = [] + if _corrdinates: + for coord in _corrdinates: + lon, lat, ele = coord + points.append((lat, lon)) + elevations.append(ele) + else: + elevations = None + points = [fallback_coordinates] * len(_times) + + return ( + points, + elevations, + _times, + dict( + heartrate=_heartrates, + power=_powers, + cadence=_cadences, + temperature=_temperatures, + ), # type: ignore + ) + + +def _convert_linestrings_collection( + data: dict, allow_empty_spatial: bool, fallback_coordinates: tuple[float, float] +) -> Track: + _data = LineFeature.model_validate(data) + + points, elevations, times, extensions = _cast_line_feature_to_data( + _data, allow_empty_spatial, fallback_coordinates + ) + + track = PyTrack( + points=points, + elevations=elevations, + times=times, + extensions=extensions, # type: ignore + ) + + return track + + +def _convert_linestrings_multisegment_collection( + data: dict, allow_empty_spatial: bool, fallback_coordinates: tuple[float, float] +) -> Track: + _data = LineCollection.model_validate(data) + + if len(_data.features) == 0: + raise EmptyGeoJsonError("No features in GeoJSON data") + + features_iter = iter(_data.features) + + # Initialize with first segment + first_segment = next(features_iter) + points, elevations, times, extensions = _cast_line_feature_to_data( + first_segment, allow_empty_spatial, fallback_coordinates + ) + track = PyTrack( + points=points, + elevations=elevations, + times=times, + extensions=extensions, # type: ignore + ) + + # Add remaining segments + for segment in features_iter: + points, elevations, times, extensions = _cast_line_feature_to_data( + segment, allow_empty_spatial, fallback_coordinates + ) + track.add_segmeent( + points=points, + elevations=elevations, + times=times, + extensions=extensions, # type: ignore + ) + + return track + + +def read_raw_data( + data: dict, allow_empty_spatial: bool, fallback_coordinates: tuple[float, float] +) -> Track: + format = None + if data.get("type") == "FeatureCollection": + features = data.get("features", []) + if features: + properties = features[0].get("properties", {}) + if properties.get("coordTimes") is not None: + format = "linestrings_multisegment_collection" + else: + format = "points_collection" + elif data.get("type") == "Feature": + format = "linestrings_collection" + if format is None: + raise UnsupportedGeoJsonTypeError("Unsupported GeoJSON format") + + if format == "points_collection": + return _convert_points_collection( + data=data, + allow_empty_spatial=allow_empty_spatial, + fallback_coordinates=fallback_coordinates, + ) + elif format == "linestrings_collection": + return _convert_linestrings_collection( + data=data, + allow_empty_spatial=allow_empty_spatial, + fallback_coordinates=fallback_coordinates, + ) + elif format == "linestrings_multisegment_collection": + return _convert_linestrings_multisegment_collection( + data=data, + allow_empty_spatial=allow_empty_spatial, + fallback_coordinates=fallback_coordinates, + ) + else: + raise ValueError("Unsupported GeoJSON format") diff --git a/tests/resources/line_geo.json b/tests/resources/line_geo.json new file mode 100644 index 0000000..0903259 --- /dev/null +++ b/tests/resources/line_geo.json @@ -0,0 +1,51 @@ +{ + "type": "Feature", + "geometry": { + "type": "LineString", + "coordinates": [ + [ + 13.404954, + 52.520008, + 30.5 + ], + [ + 13.405000, + 52.520100, + 31.0 + ], + [ + 13.405100, + 52.520200, + 31.2 + ] + ] + }, + "properties": { + "name": "Morning Ride", + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z", + "2023-10-01T08:00:10Z" + ], + "heartRates": [ + 140, + 142, + 145 + ], + "cadences": [ + 85, + 87, + 88 + ], + "powers": [ + 200.5, + 205.3, + 210.0 + ], + "temperatures": [ + 22.5, + 22.6, + 22.7 + ] + } +} diff --git a/tests/resources/line_geo_multi_segment.json b/tests/resources/line_geo_multi_segment.json new file mode 100644 index 0000000..7a77627 --- /dev/null +++ b/tests/resources/line_geo_multi_segment.json @@ -0,0 +1,66 @@ +{ + "type": "FeatureCollection", + "properties": { + "name": "Morning Ride with Pause" + }, + "features": [ + { + "type": "Feature", + "properties": { + "segment_index": 0, + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z" + ], + "heartRates": [ + 140, + 142 + ] + }, + "geometry": { + "type": "LineString", + "coordinates": [ + [ + 13.404954, + 52.520008, + 30.5 + ], + [ + 13.405000, + 52.520100, + 31.0 + ] + ] + } + }, + { + "type": "Feature", + "properties": { + "segment_index": 1, + "coordTimes": [ + "2023-10-01T08:15:00Z", + "2023-10-01T08:15:05Z" + ], + "heartRates": [ + 135, + 138 + ] + }, + "geometry": { + "type": "LineString", + "coordinates": [ + [ + 13.405100, + 52.520200, + 31.2 + ], + [ + 13.405200, + 52.520300, + 31.5 + ] + ] + } + } + ] +} diff --git a/tests/resources/line_no_coords_geo.json b/tests/resources/line_no_coords_geo.json new file mode 100644 index 0000000..6b2544c --- /dev/null +++ b/tests/resources/line_no_coords_geo.json @@ -0,0 +1,31 @@ +{ + "type": "Feature", + "properties": { + "name": "Morning Ride", + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z", + "2023-10-01T08:00:10Z" + ], + "heartRates": [ + 140, + 142, + 145 + ], + "cadences": [ + 85, + 87, + 88 + ], + "powers": [ + 200.5, + 205.3, + 210.0 + ], + "temperatures": [ + 22.5, + 22.6, + 22.7 + ] + } +} diff --git a/tests/resources/line_no_coords_geo_multi_segment.json b/tests/resources/line_no_coords_geo_multi_segment.json new file mode 100644 index 0000000..696984e --- /dev/null +++ b/tests/resources/line_no_coords_geo_multi_segment.json @@ -0,0 +1,36 @@ +{ + "type": "FeatureCollection", + "properties": { + "name": "Morning Ride with Pause" + }, + "features": [ + { + "type": "Feature", + "properties": { + "segment_index": 0, + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z" + ], + "heartRates": [ + 140, + 142 + ] + } + }, + { + "type": "Feature", + "properties": { + "segment_index": 1, + "coordTimes": [ + "2023-10-01T08:15:00Z", + "2023-10-01T08:15:05Z" + ], + "heartRates": [ + 135, + 138 + ] + } + } + ] +} diff --git a/tests/resources/point_geo.json b/tests/resources/point_geo.json new file mode 100644 index 0000000..cdd4fbe --- /dev/null +++ b/tests/resources/point_geo.json @@ -0,0 +1,41 @@ +{ + "type": "FeatureCollection", + "features": [ + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [ + 52.520008, + 13.404954, + 30.5 + ] + }, + "properties": { + "time": "2023-10-01T08:00:00Z", + "heartRate": 140, + "cadence": 85 + } + }, + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [ + 52.520100, + 13.405000, + 31.0 + ] + }, + "properties": { + "time": "2023-10-01T08:00:05Z", + "heartRate": 142, + "cadence": 87, + "power": 205.3 + } + } + ], + "properties": { + "name": "Morning Ride" + } +} diff --git a/tests/resources/point_no_coords_geo.json b/tests/resources/point_no_coords_geo.json new file mode 100644 index 0000000..8837ff8 --- /dev/null +++ b/tests/resources/point_no_coords_geo.json @@ -0,0 +1,25 @@ +{ + "type": "FeatureCollection", + "features": [ + { + "type": "Feature", + "properties": { + "time": "2023-10-01T08:00:00Z", + "heartRate": 140, + "cadence": 85 + } + }, + { + "type": "Feature", + "properties": { + "time": "2023-10-01T08:00:05Z", + "heartRate": 142, + "cadence": 87, + "power": 205.3 + } + } + ], + "properties": { + "name": "Morning Ride" + } +} diff --git a/tests/test_geo_json.py b/tests/test_geo_json.py new file mode 100644 index 0000000..e2b60f6 --- /dev/null +++ b/tests/test_geo_json.py @@ -0,0 +1,110 @@ +import importlib.resources +import json + +import pytest + +from geo_track_analyzer.exceptions import EmptyGeoJsonError, GeoJsonWithoutGeometryError +from geo_track_analyzer.track import Track +from geo_track_analyzer.utils.geojson import ( + _convert_linestrings_collection, + _convert_linestrings_multisegment_collection, + _convert_points_collection, +) +from tests import resources + + +def test_convert_points_collection() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "point_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_points_collection(data, False, (0, 0)) + assert isinstance(track, Track) + + +def test_convert_points_collection_no_geo() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "point_no_coords_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_points_collection(data, True, (0, 0)) + assert isinstance(track, Track) + + +def test_convert_points_collection_no_geo_fail() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "point_no_coords_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + with pytest.raises( + GeoJsonWithoutGeometryError, match="One or more features have no geometry" + ): + _convert_points_collection(data, False, (0, 0)) + + +def test_convert_linestrings_collection() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_linestrings_collection(data, False, (0, 0)) + assert isinstance(track, Track) + + +def test_convert_linestrings_collection_no_geo() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_no_coords_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_linestrings_collection(data, True, (0, 0)) + assert isinstance(track, Track) + + +def test_convert_linestrings_collection_no_geo_fail() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_no_coords_geo.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + with pytest.raises(GeoJsonWithoutGeometryError, match="Geometry is missing"): + _convert_linestrings_collection(data, False, (0, 0)) + + +def test_convert_linestrings_multisegment_collection() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_geo_multi_segment.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_linestrings_multisegment_collection(data, False, (0, 0)) + assert isinstance(track, Track) + assert track.n_segments == 2 + + +def test_convert_linestrings_multisegment_collection_no_geo_fail() -> None: + resource_files = importlib.resources.files(resources) + with open( + (resource_files / "line_no_coords_geo_multi_segment.json").joinpath(), # type: ignore + "rb", + ) as f: + data = json.load(f) + + with pytest.raises(GeoJsonWithoutGeometryError, match="Geometry is missing"): + _convert_linestrings_multisegment_collection(data, False, (0, 0)) + + +def test_convert_linestrings_multisegment_collection_no_geo() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_geo_multi_segment.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + + track = _convert_linestrings_multisegment_collection(data, True, (0, 0)) + assert isinstance(track, Track) + assert track.n_segments == 2 + + +def test_convert_linestrings_multisegment_collection_no_segments() -> None: + resource_files = importlib.resources.files(resources) + with open((resource_files / "line_geo_multi_segment.json").joinpath(), "rb") as f: # type: ignore + data = json.load(f) + data["features"] = [] + with pytest.raises(EmptyGeoJsonError): + _convert_linestrings_multisegment_collection(data, False, (0, 0)) diff --git a/tests/test_track.py b/tests/test_track.py index dc5ce5f..a942ced 100644 --- a/tests/test_track.py +++ b/tests/test_track.py @@ -9,12 +9,20 @@ from pytest_mock import MockerFixture from geo_track_analyzer.exceptions import ( + GeoJsonWithoutGeometryError, TrackInitializationError, TrackTransformationError, VisualizationSetupError, ) from geo_track_analyzer.model import SegmentOverview, ZoneInterval, Zones -from geo_track_analyzer.track import ByteTrack, FITTrack, GPXFileTrack, PyTrack, Track +from geo_track_analyzer.track import ( + ByteTrack, + FITTrack, + GeoJsonTrack, + GPXFileTrack, + PyTrack, + Track, +) from geo_track_analyzer.utils.internal import get_extension_value from tests import resources @@ -834,3 +842,37 @@ def test_fit_track() -> None: FITTrack((resource_files / "MyWhoosh_1.fit").read_bytes()) assert True + + +@pytest.mark.parametrize( + ("file_name", "allow"), + [ + ("line_geo.json", False), + ("line_no_coords_geo.json", True), + ("point_geo.json", False), + ("point_no_coords_geo.json", True), + ("line_geo_multi_segment.json", False), + ("line_no_coords_geo_multi_segment.json", True), + ], +) +def test_geojson_track(file_name: str, allow: bool) -> None: + resource_files = importlib.resources.files(resources) + _file = (resource_files / file_name).read_bytes() + GeoJsonTrack(_file, allow_empty_spatial=allow) + + assert True + + +@pytest.mark.parametrize( + "file_name", + [ + "line_no_coords_geo.json", + "point_no_coords_geo.json", + "line_no_coords_geo_multi_segment.json", + ], +) +def test_geojson_track_no_geo_error(file_name: str) -> None: + resource_files = importlib.resources.files(resources) + _file = (resource_files / file_name).read_bytes() + with pytest.raises(GeoJsonWithoutGeometryError): + GeoJsonTrack(_file, allow_empty_spatial=False) From 3eb103bbc86ded680ce5beb390a2c8d8579ffa5a Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Tue, 13 Jan 2026 23:03:56 +0100 Subject: [PATCH 7/9] =?UTF-8?q?feat:=20=F0=9F=97=BA=EF=B8=8F=20Add=20GeoJs?= =?UTF-8?q?onTrack=20dict=20support=20and=20export?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Add `GeoJsonTrack` to public API exports in `__init__.py` - Extend `GeoJsonTrack.__init__()` to accept `dict` type for direct GeoJSON data - Reorder source type checking to handle dict before string/bytes --- geo_track_analyzer/__init__.py | 11 ++++++++++- geo_track_analyzer/track.py | 6 ++++-- 2 files changed, 14 insertions(+), 3 deletions(-) diff --git a/geo_track_analyzer/__init__.py b/geo_track_analyzer/__init__.py index 019987f..4ebe4d5 100644 --- a/geo_track_analyzer/__init__.py +++ b/geo_track_analyzer/__init__.py @@ -9,7 +9,15 @@ OpenTopoElevationEnhancer, get_enhancer, ) -from .track import ByteTrack, FITTrack, GPXFileTrack, PyTrack, SegmentTrack, Track +from .track import ( + ByteTrack, + FITTrack, + GeoJsonTrack, + GPXFileTrack, + PyTrack, + SegmentTrack, + Track, +) __all__ = [ "ByteTrack", @@ -18,6 +26,7 @@ "EnhancerType", "FITTrack", "GPXFileTrack", + "GeoJsonTrack", "OpenElevationEnhancer", "OpenTopoElevationEnhancer", "PyTrack", diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index 5e94531..ebdf9c2 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -1415,7 +1415,7 @@ class GeoJsonTrack(Track): def __init__( self, - source: str | bytes, + source: str | bytes | dict, stopped_speed_threshold: float = 1, max_speed_percentile: int = 95, allow_empty_spatial: bool = False, @@ -1454,7 +1454,9 @@ def __init__( cadence_zones=cadence_zones, ) - if isinstance(source, str): + if isinstance(source, dict): + raw_data = source + elif isinstance(source, str): with open(source, "r") as f: raw_data = json.load(f) else: From 053c7655b47500e5073b597d010ae39150ed0463 Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Thu, 15 Jan 2026 07:27:32 +0100 Subject: [PATCH 8/9] fix(get_track_overview): Overview is generated for tracks without movement --- geo_track_analyzer/track.py | 5 +- .../resources/processed_Weight_Training.json | 215 ++++++++++++++++++ tests/test_processing.py | 17 +- 3 files changed, 235 insertions(+), 2 deletions(-) create mode 100644 tests/resources/processed_Weight_Training.json diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index ebdf9c2..39eb53f 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -225,7 +225,10 @@ def get_track_overview( track_max_speed = None track_avg_speed = None - if all(seg.has_times() for seg in self.track.segments): + if ( + all(seg.has_times() for seg in self.track.segments) + and not track_data.speed.isna().all() + ): track_max_speed = track_data.speed[track_data.in_speed_percentile].max() track_avg_speed = track_data.speed[track_data.in_speed_percentile].mean() diff --git a/tests/resources/processed_Weight_Training.json b/tests/resources/processed_Weight_Training.json new file mode 100644 index 0000000..29e29f6 --- /dev/null +++ b/tests/resources/processed_Weight_Training.json @@ -0,0 +1,215 @@ +{ + "type": "FeatureCollection", + "features": [ + { + "type": "Feature", + "properties": { + "coordTimes": [ + "2026-01-13T15:33:27Z", + "2026-01-13T15:33:43Z", + "2026-01-13T15:33:50Z", + 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103, + 104, + 105, + 106, + 107, + 105, + 100, + 99, + 96, + 95, + 95, + 89, + 86, + 89, + 92, + 96, + 93, + 92, + 93, + 95, + 103, + 95, + 95, + 85, + 85, + 82, + 82, + 79, + 79, + 79 + ] + }, + "geometry": null + } + ] +} diff --git a/tests/test_processing.py b/tests/test_processing.py index b99652c..b331581 100644 --- a/tests/test_processing.py +++ b/tests/test_processing.py @@ -1,3 +1,4 @@ +import importlib.resources from datetime import datetime, timedelta from typing import Literal @@ -15,8 +16,9 @@ split_data, split_data_by_time, ) -from geo_track_analyzer.track import PyTrack, Track +from geo_track_analyzer.track import GeoJsonTrack, PyTrack, Track from geo_track_analyzer.utils.base import distance +from tests import resources def test_get_processed_track_data(track_for_test: Track) -> None: @@ -304,3 +306,16 @@ def test_get_processed_segment_data( ) assert all(c in data.columns for c in exp_extension_cols) + + +def test_overview_with_no_movement() -> None: + resource_files = importlib.resources.files(resources) + _file = (resource_files / "processed_Weight_Training.json").read_bytes() + + track = GeoJsonTrack(_file, allow_empty_spatial=True) + + overview = track.get_track_overview() + + assert overview.max_elevation is None + assert overview.velocity is None + assert overview.heartrate is not None From c424cb0e36772603353d2cf489b66685a0b1bb62 Mon Sep 17 00:00:00 2001 From: Korbinian Schweiger Date: Fri, 13 Feb 2026 20:00:38 +0100 Subject: [PATCH 9/9] doc: Add GeoJSON support documentation (#36) --- docs/api_tracks.md | 1 + docs/geojson.md | 135 ++++++ geo_track_analyzer/track.py | 2 +- mkdocs.yml | 1 + pyproject.toml | 3 + uv.lock | 897 +++++++++++++++++++----------------- 6 files changed, 606 insertions(+), 433 deletions(-) create mode 100644 docs/geojson.md diff --git a/docs/api_tracks.md b/docs/api_tracks.md index f96560b..ef18eab 100644 --- a/docs/api_tracks.md +++ b/docs/api_tracks.md @@ -5,4 +5,5 @@ ::: geo_track_analyzer.track.ByteTrack ::: geo_track_analyzer.track.PyTrack ::: geo_track_analyzer.track.SegmentTrack +::: geo_track_analyzer.track.GeoJsonTrack diff --git a/docs/geojson.md b/docs/geojson.md new file mode 100644 index 0000000..314cc3e --- /dev/null +++ b/docs/geojson.md @@ -0,0 +1,135 @@ +# GeoJSON support + +The track enhancer support loading specific configurations of valid GeoJSON file via the [`GeoJsonTrack`][geo_track_analyzer.track.GeoJsonTrack]. + +???+ warning "Warning" + + The order in the cooordinates array must be [longitude, latitude, elevation] and not [latitude, longitude, elevation]. This is a common mistake when working with GeoJSON data and can lead to incorrect results if not handled properly. + +The following example for all three configurations that are supported. + +The use does not need to specify in advance which configuration is used. On initialization, it is automatically determined based on the input structure. If no valid configuration is found, a `UnsupportedGeoJsonTypeError` is raised. + +Additionally, it is possible to load GeoJSON files that do not contain any geometry. While this seems like a silly feature in a "track analyzer", it provides the option to visualize files that contain for example heart rate as a function of time. By default, a `GeoJsonWithoutGeometryError` is raised. But the `allow_empty_spatial` flag can be passed to enable this feature. In this case the internal gpx track (or the one you would get by exporting the [`GeoJsonTrack`][geo_track_analyzer.track.GeoJsonTrack] to xml) with the coordinates set with `fallback_coordinates` defaulting to (0,0). Also, this disables the moving/stopped logic in the segment data (every point is considered moving in that case). + +## LineString + Arrays + +Here the coordinates are stored as a LineString geometry and the time, heart rate, cadence and power values are stored as arrays in the properties. The arrays must be of the same length as the number of coordinates in the LineString. + +```json +{ + "type": "Feature", + "geometry": { + "type": "LineString", + "coordinates": [ + [13.404954, 52.520008, 30.5], + [13.405000, 52.520100, 31.0], + [13.405100, 52.520200, 31.2] + ] + }, + "properties": { + "name": "Morning Ride", + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z", + "2023-10-01T08:00:10Z" + ], + "heartRates": [140, 142, 145] + "cadences": [85, 87, 88], + "powers": [200.5, 205.3, 210.0], + } +} +``` + +### With multiple segments + +Multiple segments can be represented as multiple features in a FeatureCollection and is *only* available in the __LineString + Arrays__ configuration. Each feature must have a `segment_index` property that indicates the index of the segment in the track. The `coordTimes`, `heartRates`, `cadences`, and `powers` properties must be arrays of the same length as the number of coordinates in the LineString geometry of the feature. + +```json +{ + "type": "FeatureCollection", + "properties": { + "name": "Morning Ride with Pause" + }, + "features": [ + { + "type": "Feature", + "properties": { + "segment_index": 0, + "coordTimes": [ + "2023-10-01T08:00:00Z", + "2023-10-01T08:00:05Z" + ], + "heartRates": [140, 142] + }, + "geometry": { + "type": "LineString", + "coordinates": [ + [13.404954, 52.520008, 30.5], + [13.405000, 52.520100, 31.0] + ] + } + }, + { + "type": "Feature", + "properties": { + "segment_index": 1, + "coordTimes": [ + "2023-10-01T08:15:00Z", + "2023-10-01T08:15:05Z" + ], + "heartRates": [135,138] + }, + "geometry": { + "type": "LineString", + "coordinates": [ + [13.405100,52.520200, 31.2], + [13.405200, 52.520300, 31.5] + ] + } + } + ] +} +``` + + + + + +## Collection of Points + +In this case the data is fully represented by a FeatureCollection and each feature represents a single point in the track. The time, heart rate, cadence and power values are stored as properties of each feature. The geometry of each feature must be a Point geometry with the coordinates representing the latitude, longitude and elevation of the point. + +```json +{ + "type": "FeatureCollection", + "features": [ + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [13.404954, 52.520008, 30.5] + }, + "properties": { + "time": "2023-10-01T08:00:00Z", + "heartRate": 140, + "cadence": 85 + } + }, + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [13.405000, 52.520100, 31.0] + }, + "properties": { + "time": "2023-10-01T08:00:05Z", + "heartRate": 142, + "cadence": 87 + } + } + ] +} +``` + + diff --git a/geo_track_analyzer/track.py b/geo_track_analyzer/track.py index 39eb53f..e074753 100644 --- a/geo_track_analyzer/track.py +++ b/geo_track_analyzer/track.py @@ -1414,7 +1414,7 @@ def track(self) -> GPXTrack: @final class GeoJsonTrack(Track): - """Track that should be initialized by loading a .fit file""" + """Track that should be initialized by loading a .json file""" def __init__( self, diff --git a/mkdocs.yml b/mkdocs.yml index 1ae3f48..bccaa60 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -15,6 +15,7 @@ nav: - Enhancer: enhancer.md - CLI: cli.md - PostGIS: postgis.md + - GeoJSON Support: geojson.md - API Reference: - Track Reference: api_tracks.md - Model Reference: api_model.md diff --git a/pyproject.toml b/pyproject.toml index e123984..a0e26b9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,6 +33,8 @@ dependencies = [ "fitparse~=1.2", "pydantic>=2,<3", "pydantic-numpy", + "click>=8.3.1", + "mkdocs>=1.6.1", ] [project.urls] @@ -126,6 +128,7 @@ doc = [ "mkdocs-click>=0.8.1", "mkdocs-material>=9.6.5", "mkdocstrings[python]>=0.28.2", + "griffe>=0.46.0,<2.0", # version 2 does introduce issues with mkdocstrings[python] ] test = [ "pytest>=8.3.4", diff --git a/uv.lock b/uv.lock index afc2eb7..2083766 100644 --- a/uv.lock +++ b/uv.lock @@ -26,11 +26,11 @@ wheels = [ [[package]] name = "babel" -version = "2.17.0" +version = "2.18.0" 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