Hello,
first of all nice work, I am really interested in exploring the presence of ectopic telomeric repeats in my samples as well.
I am trying to run the pipeline on a set of bam files, but the current version of TelFuse tool requires files not included within lib folder, e.g.lib.find_telo_contentin file softclipped_analysis.py or lib.fastqLib in file extract_softclipped_sites.py. I noticed that these scripts were recently modified in the last update, so maybe you still have to fix all new dependencies. Are you planning to make further modifications to the GitHub page in the near future?
Thanks in advance