Rqc craches #1
Description
From Bastian:
Error in `/usr/lib/R/bin/exec/R': corrupted size vs. prev_size: 0x0000000017185cd0
Session info:
> sessionINFO()
Error in sessionINFO() : could not find function "sessionINFO"
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_AT.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=de_AT.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=de_AT.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_AT.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] Rqc_1.13.0 ggplot2_3.0.0
[3] ShortRead_1.36.1 GenomicAlignments_1.14.2
[5] SummarizedExperiment_1.8.1 DelayedArray_0.4.1
[7] matrixStats_0.53.1 Biobase_2.38.0
[9] Rsamtools_1.30.0 GenomicRanges_1.30.3
[11] GenomeInfoDb_1.14.0 Biostrings_2.46.0
[13] XVector_0.18.0 IRanges_2.12.0
[15] S4Vectors_0.16.0 BiocGenerics_0.24.0
[17] BiocParallel_1.12.0
loaded via a namespace (and not attached):
[1] ProtGenerics_1.10.0 bitops_1.0-6
[3] bit64_0.9-7 RColorBrewer_1.1-2
[5] progress_1.2.0 httr_1.3.1
[7] rprojroot_1.3-2 GenomicFiles_1.14.0
[9] tools_3.4.4 backports_1.1.2
[11] R6_2.2.2 rpart_4.1-13
[13] Hmisc_4.1-1 DBI_1.0.0
[15] lazyeval_0.2.1 colorspace_1.3-2
[17] nnet_7.3-12 withr_2.1.2
[19] tidyselect_0.2.4 gridExtra_2.3
[21] prettyunits_1.0.2 RMySQL_0.10.8
[23] curl_3.2 bit_1.1-14
[25] compiler_3.4.4 htmlTable_1.12
[27] rtracklayer_1.38.3 scales_1.0.0
[29] checkmate_1.8.5 stringr_1.3.1
[31] digest_0.6.15 foreign_0.8-70
[33] rmarkdown_1.10 dichromat_2.0-0
[35] base64enc_0.1-3 pkgconfig_2.0.1
[37] htmltools_0.3.6 ensembldb_2.2.2
[39] BSgenome_1.46.0 htmlwidgets_1.2
[41] rlang_0.2.1 rstudioapi_0.7
[43] RSQLite_2.1.1 BiocInstaller_1.28.0
[45] shiny_1.1.0 bindr_0.1.1
[47] hwriter_1.3.2 acepack_1.4.1
[49] dplyr_0.7.6 VariantAnnotation_1.24.5
[51] RCurl_1.95-4.10 magrittr_1.5
[53] GenomeInfoDbData_1.0.0 Formula_1.2-3
[55] Matrix_1.2-14 Rcpp_0.12.18
[57] munsell_0.5.0 stringi_1.2.3
[59] yaml_2.1.19 zlibbioc_1.24.0
[61] AnnotationHub_2.10.1 plyr_1.8.4
[63] grid_3.4.4 blob_1.1.1
[65] promises_1.0.1 crayon_1.3.4
[67] lattice_0.20-35 splines_3.4.4
[69] GenomicFeatures_1.30.3 hms_0.4.2
[71] knitr_1.20 pillar_1.2.3
[73] markdown_0.8 reshape2_1.4.3
[75] biomaRt_2.34.2 XML_3.98-1.11
[77] glue_1.2.0 evaluate_0.10.1
[79] biovizBase_1.26.0 latticeExtra_0.6-28
[81] data.table_1.11.4 httpuv_1.4.4.2
[83] gtable_0.2.0 purrr_0.2.5
[85] assertthat_0.2.0 mime_0.5
[87] xtable_1.8-2 AnnotationFilter_1.2.0
[89] later_0.7.3 survival_2.42-3
[91] tibble_1.4.2 AnnotationDbi_1.40.0
[93] memoise_1.1.0 bindrcpp_0.2.2
[95] cluster_2.0.7-1 interactiveDisplayBase_1.16.0
[97] BiocStyle_2.6.1
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