Fetch ECOD history does not work

[staszekdh]

The _get_historical_versions function fails when parsing data from http://prodata.swmed.edu/ecod/complete/distribution. This is probably due to the presence of new records such as af2_human which do not have a proper version number.

File /temp/sdunin/scr/localpdb/localpdb/plugins/ECOD.py:70, in ECOD._get_historical_versions(self)
     68         print(litag)
     69         ver_url = self.plugin_config['ecod_domain'] + litag.find('a')['href']
---> 70         version = int(str(litag.text).split(' ')[0])
     71         ecod_history[version] = ver_url # ECOD history dict
     72 return ecod_history

ValueError: invalid literal for int() with base 10: ''

[jludwiczak]

@staszekdh - Yes, that was originally fixed in @9c3061f but another AF2 related entry was added recently. Using the same fix for now.

[staszekdh]

@jludwiczak the problem with ECOD s back. Quick fix is to edit /plugins/ECOD.py:

• for litag in ultag.find_all('li')[:-2] to for litag in ultag.find_all('li')[:-3]

• cols = [x if x != 'f_id' else 'ecod_number' for x in tmp_df.columns] to cols = [x if x != 't_id' else 'ecod_number' for x in tmp_df.columns]