Compile errors for 1.0.5rc3

[lipnikov]

I was not able to finish installation of Jali on my OSX without two tweaks:

1. Add definition -DMSTK_HAVE_MPI to mesh_mstk/CMakeFiles.txt

2. Move definition of UniStateVector::print outside the class body, after definition of operator<<

[raovgarimella]

OK. Thanks

…

-------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: rao@lanl.gov Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao --------------------------------------------------------------------

________________________________ From: Konstantin Lipnikov <notifications@github.com> Sent: Friday, November 8, 2019 9:46:47 AM To: lanl/jali Cc: Subscribed Subject: [lanl/jali] Compile errors for 1.0.5rc3 (#18) I was not able to finish installation of Jali on my OSX without two tweaks: 1. Add definition -DMSTK_HAVE_MPI to mesh_mstk/CMakeFiles.txt 2. Move definition of UniStateVector::print outside the class body, after definition of operator<< — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#18?email_source=notifications&email_token=AEBAZQHCSPKSCQPQO4V5GLTQSWJXNA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HYAMC2Q>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AEBAZQDVBFFFAEDRCKR22ALQSWJXNANCNFSM4JK2KREQ>.

[lipnikov]

The first one may be related to hdf5 issue which I do not understand: ========================================================== -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /Users/lipnikov/ASCEM/TPLs-0.96.3-clang-9.0.0-ompi-3.1.4-dso/lib/libhdf5_hl.dylib;/Users/lipnikov/ASCEM/TPLs-0.96.3-clang-9.0.0-ompi-3.1.4-dso/lib/libhdf5.dylib;/Users/lipnikov/ASCEM/build-tpls/install/openmpi-3.1.4-clang-9.0.0/lib/libmpi.dylib (Required is at least version "1.8.18") found components: C HL CMake Warning at config/cmake/JaliTPL.cmake:191 (message): The HDF5 installation found in HDF5_DIR-NOTFOUND is not a parallel build. At this time, this installation is compatible with other TPLs. Soon Jali will require a parallel enabled HDF5. Please update your HDF5 installation to include MPI I/O symbols Call Stack (most recent call first): CMakeLists.txt:87 (include)

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On Fri, Nov 8, 2019 at 10:03 AM Rao Garimella ***@***.***> wrote: OK. Thanks -------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: ***@***.*** Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao -------------------------------------------------------------------- ________________________________ From: Konstantin Lipnikov ***@***.***> Sent: Friday, November 8, 2019 9:46:47 AM To: lanl/jali Cc: Subscribed Subject: [lanl/jali] Compile errors for 1.0.5rc3 (#18) I was not able to finish installation of Jali on my OSX without two tweaks: 1. Add definition -DMSTK_HAVE_MPI to mesh_mstk/CMakeFiles.txt 2. Move definition of UniStateVector::print outside the class body, after definition of operator<< — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub< #18?email_source=notifications&email_token=AEBAZQHCSPKSCQPQO4V5GLTQSWJXNA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HYAMC2Q>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/AEBAZQDVBFFFAEDRCKR22ALQSWJXNANCNFSM4JK2KREQ >. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#18?email_source=notifications&email_token=AEMSKSKEZFVGOC6ET2G5CVTQSWLVZA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDSXP5A#issuecomment-551909364>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEMSKSMMBXW3VNXD4VEEQODQSWLVZANCNFSM4JK2KREQ> .

[raovgarimella]

More reason to setup a spack recipe for Jali

-------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: rao@lanl.gov Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao --------------------------------------------------------------------

________________________________ From: Konstantin Lipnikov <notifications@github.com> Sent: Friday, November 8, 2019 10:07:55 AM To: lanl/jali Cc: Garimella, Rao; Assign Subject: Re: [lanl/jali] Compile errors for 1.0.5rc3 (#18) The first one may be related to hdf5 issue which I do not understand: ========================================================== -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /Users/lipnikov/ASCEM/TPLs-0.96.3-clang-9.0.0-ompi-3.1.4-dso/lib/libhdf5_hl.dylib;/Users/lipnikov/ASCEM/TPLs-0.96.3-clang-9.0.0-ompi-3.1.4-dso/lib/libhdf5.dylib;/Users/lipnikov/ASCEM/build-tpls/install/openmpi-3.1.4-clang-9.0.0/lib/libmpi.dylib (Required is at least version "1.8.18") found components: C HL CMake Warning at config/cmake/JaliTPL.cmake:191 (message): The HDF5 installation found in HDF5_DIR-NOTFOUND is not a parallel build. At this time, this installation is compatible with other TPLs. Soon Jali will require a parallel enabled HDF5. Please update your HDF5 installation to include MPI I/O symbols Call Stack (most recent call first): CMakeLists.txt:87 (include)

On Fri, Nov 8, 2019 at 10:03 AM Rao Garimella ***@***.***> wrote: OK. Thanks -------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: ***@***.*** Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao -------------------------------------------------------------------- ________________________________ From: Konstantin Lipnikov ***@***.***> Sent: Friday, November 8, 2019 9:46:47 AM To: lanl/jali Cc: Subscribed Subject: [lanl/jali] Compile errors for 1.0.5rc3 (#18) I was not able to finish installation of Jali on my OSX without two tweaks: 1. Add definition -DMSTK_HAVE_MPI to mesh_mstk/CMakeFiles.txt 2. Move definition of UniStateVector::print outside the class body, after definition of operator<< — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub< #18?email_source=notifications&email_token=AEBAZQHCSPKSCQPQO4V5GLTQSWJXNA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HYAMC2Q>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/AEBAZQDVBFFFAEDRCKR22ALQSWJXNANCNFSM4JK2KREQ >. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#18?email_source=notifications&email_token=AEMSKSKEZFVGOC6ET2G5CVTQSWLVZA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDSXP5A#issuecomment-551909364>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEMSKSMMBXW3VNXD4VEEQODQSWLVZANCNFSM4JK2KREQ> .

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub<#18?email_source=notifications&email_token=AEBAZQHGJRMXUJRGC3HJB4LQSWMGXA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDSX4NA#issuecomment-551910964>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AEBAZQFUZU2GYROXFYKX4XTQSWMGXANCNFSM4JK2KREQ>.

[lipnikov]

Spack helps with input parameters, it still relies on correct internal cmakefiles, I think

…

On Friday, November 8, 2019, Rao Garimella ***@***.***> wrote: More reason to setup a spack recipe for Jali -------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: ***@***.*** Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao -------------------------------------------------------------------- ________________________________ From: Konstantin Lipnikov ***@***.***> Sent: Friday, November 8, 2019 10:07:55 AM To: lanl/jali Cc: Garimella, Rao; Assign Subject: Re: [lanl/jali] Compile errors for 1.0.5rc3 (#18) The first one may be related to hdf5 issue which I do not understand: ========================================================== -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /Users/lipnikov/ASCEM/TPLs-0.96.3-clang-9.0.0-ompi-3.1.4- dso/lib/libhdf5_hl.dylib;/Users/lipnikov/ASCEM/TPLs-0. 96.3-clang-9.0.0-ompi-3.1.4-dso/lib/libhdf5.dylib;/Users/ lipnikov/ASCEM/build-tpls/install/openmpi-3.1.4-clang-9. 0.0/lib/libmpi.dylib (Required is at least version "1.8.18") found components: C HL CMake Warning at config/cmake/JaliTPL.cmake:191 (message): The HDF5 installation found in HDF5_DIR-NOTFOUND is not a parallel build. At this time, this installation is compatible with other TPLs. Soon Jali will require a parallel enabled HDF5. Please update your HDF5 installation to include MPI I/O symbols Call Stack (most recent call first): CMakeLists.txt:87 (include) On Fri, Nov 8, 2019 at 10:03 AM Rao Garimella ***@***.***> wrote: > OK. Thanks > > > -------------------------------------------------------------------- > Rao V Garimella Tel: (505) 665-2928 > T-5, MS B284 '\ '\ FAX: (505) 665-5757 > Los Alamos National Lab ( )-( ) Email: ***@***.*** > Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao > -------------------------------------------------------------------- > > ________________________________ > From: Konstantin Lipnikov ***@***.***> > Sent: Friday, November 8, 2019 9:46:47 AM > To: lanl/jali > Cc: Subscribed > Subject: [lanl/jali] Compile errors for 1.0.5rc3 (#18) > > > I was not able to finish installation of Jali on my OSX without two tweaks: > > 1. Add definition -DMSTK_HAVE_MPI to mesh_mstk/CMakeFiles.txt > > 2. Move definition of UniStateVector::print outside the class body, after > definition of operator<< > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub< > #18?email_source= notifications&email_token=AEBAZQHCSPKSCQPQO4V5GLTQSWJXNA 5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HYAMC2Q>, > or unsubscribe< > https://github.com/notifications/unsubscribe-auth/ AEBAZQDVBFFFAEDRCKR22ALQSWJXNANCNFSM4JK2KREQ > >. > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#18?email_source= notifications&email_token=AEMSKSKEZFVGOC6ET2G5CVTQSWLVZA 5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5 WW2ZLOORPWSZGOEDSXP5A#issuecomment-551909364>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ AEMSKSMMBXW3VNXD4VEEQODQSWLVZANCNFSM4JK2KREQ> > . > — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub<https://github.com/ lanl/jali#18?email_source=notifications&email_token= AEBAZQHGJRMXUJRGC3HJB4LQSWMGXA5CNFSM4JK2KRE2YY3PNVWWK3TUL52H S4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDSX4NA#issuecomment-551910964>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ AEBAZQFUZU2GYROXFYKX4XTQSWMGXANCNFSM4JK2KREQ>. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#18?email_source=notifications&email_token=AEMSKSMTQB35STBZCWGA7JTQSWP4FA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEDS2UQA#issuecomment-551922240>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEMSKSOL4EZME4WO2G5UKCDQSWP4FANCNFSM4JK2KREQ> .

[lipnikov]

If installed parallel HDF5 is 1.10.x then find_package(HDF5 1.8.18 REQUIRED C HL) complains about missing parallel capabilities. find_package(HDF5 1.10.0 REQUIRED C HL) works correctly
and Jali can be compiled without add_definitions("-DMSTK_HAVE_MPI")

[raovgarimella]

I am trying to upgrade MSTK and Jali's build. No estimated time of completion

…

-------------------------------------------------------------------- Rao V Garimella Tel: (505) 665-2928 T-5, MS B284 '\ '\ FAX: (505) 665-5757 Los Alamos National Lab ( )-( ) Email: rao@lanl.gov Los Alamos, NM 87545 Web: http://math.lanl.gov/~rao --------------------------------------------------------------------

________________________________ From: Konstantin Lipnikov <notifications@github.com> Sent: Monday, November 18, 2019 12:12:57 PM To: lanl/jali Cc: Garimella, Rao; Assign Subject: Re: [lanl/jali] Compile errors for 1.0.5rc3 (#18) If installed parallel HDF5 is 1.10.x then find_package(HDF5 1.8.18 REQUIRED C HL) complains about missing parallel capabilities. find_package(HDF5 1.10.0 REQUIRED C HL) works correctly — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub<#18?email_source=notifications&email_token=AEBAZQHYCMAMBKJMNMREEL3QULSLTA5CNFSM4JK2KRE2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEELSKHQ#issuecomment-555164958>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AEBAZQAHZ337T4QX536MHKDQULSLTANCNFSM4JK2KREQ>.