Restore section-based organization for scripts directory

Author: Idate96

docs/computing-guide.md

@@ -621,11 +621,11 @@ We provide test scripts for all computing scenarios:
 - Test scripts are provided inline in the examples above
 
 ### Batch Jobs
-- **[test_cpu_job.sh](scripts/test_cpu_job.sh)** - Basic CPU job submission
-- **[test_basic_cpu.sh](scripts/test_basic_cpu.sh)** - Alternative CPU test
-- **[test_gpu_job.sh](scripts/test_gpu_job.sh)** - GPU allocation test
-- **[test_gpu_specific.sh](scripts/test_gpu_specific.sh)** - Specific GPU type selection (RTX 4090)
-- **[test_array_job.sh](scripts/test_array_job.sh)** - Array job for parameter sweeps
+- **[test_cpu_job.sh](scripts/computing-guide/test_cpu_job.sh)** - Basic CPU job submission
+- **[test_basic_cpu.sh](scripts/computing-guide/test_basic_cpu.sh)** - Alternative CPU test
+- **[test_gpu_job.sh](scripts/computing-guide/test_gpu_job.sh)** - GPU allocation test
+- **[test_gpu_specific.sh](scripts/computing-guide/test_gpu_specific.sh)** - Specific GPU type selection (RTX 4090)
+- **[test_array_job.sh](scripts/computing-guide/test_array_job.sh)** - Array job for parameter sweeps
 
 To run the tests:
 ```bash

docs/container-workflow.md

@@ -359,10 +359,10 @@ ssh euler "cd /cluster/work/rsl/$USER && sbatch job_${VERSION}.sh"
 
 Complete test files for the container workflow:
 
-- **[Dockerfile](scripts/Dockerfile)** - Test Docker image with CUDA support
-- **[hello_cluster.py](scripts/hello_cluster.py)** - Python test script for containers
-- **[test_job_project.sh](scripts/test_job_project.sh)** - Complete container job example
-- **[test_container_extraction.sh](scripts/test_container_extraction.sh)** - Test container extraction timing
+- **[Dockerfile](scripts/container-workflow/Dockerfile)** - Test Docker image with CUDA support
+- **[hello_cluster.py](scripts/container-workflow/hello_cluster.py)** - Python test script for containers
+- **[test_job_project.sh](scripts/container-workflow/test_job_project.sh)** - Complete container job example
+- **[test_container_extraction.sh](scripts/container-workflow/test_container_extraction.sh)** - Test container extraction timing
 
 To test the complete workflow:
 ```bash

docs/data-management.md

@@ -83,7 +83,7 @@ Whenever you run a compute job, you can also ask for a certain amount of local s
 
 To verify your storage setup and check quotas:
 
-- **[test_storage_quotas.sh](scripts/test_storage_quotas.sh)** - Checks all storage paths, quotas, and creates missing directories
+- **[test_storage_quotas.sh](scripts/data-management/test_storage_quotas.sh)** - Checks all storage paths, quotas, and creates missing directories
 
 Submit as a job to test `$TMPDIR`:
 ```bash

docs/getting-started.md

@@ -140,7 +140,7 @@ Once you are logged into the Euler cluster, it's important to confirm that you h
 
 To verify your setup is working correctly, we provide test scripts:
 
-- **[test_group_membership.sh](scripts/test_group_membership.sh)** - Verifies RSL group membership and creates user directories
+- **[test_group_membership.sh](scripts/getting-started/test_group_membership.sh)** - Verifies RSL group membership and creates user directories
 
 Run the test after logging in:
 ```bash

docs/python-environments.md

@@ -379,8 +379,8 @@ python analyze_results.py --results-dir /cluster/project/rsl/$USER/results/<job_
 
 We provide complete test scripts to verify the ML workflow:
 
-- **[fake_train.py](scripts/fake_train.py)** - Simulated ML training script for testing
-- **[test_full_training_job.sh](scripts/test_full_training_job.sh)** - Complete ML training job test
+- **[fake_train.py](scripts/python-environments/fake_train.py)** - Simulated ML training script for testing
+- **[test_full_training_job.sh](scripts/python-environments/test_full_training_job.sh)** - Complete ML training job test
 
 To test the full workflow:
 ```bash