pyGenClean ERROR duplicated_snps: ATGCATGC: unknown allele

[jgrundstad]

I'm running into an error in the duplicated_snps module:

pyGenClean ERROR] duplicated_snps: ATGCATGC: unknown allele

Is it possible to process datasets that include deletion/insertion variants? Let me know if I can clarify further.

Thanks!

[lemieuxl]

For now, it is not possible to process insertion/deletion variants.

We are planning to add this feature in a future release, but this might take some time since we want to upgrade the different components to improve performance.