I was successfully able to run LoReAn on both example datasets, and when I attempt to run the pipeline on my dataset, genome masking, STAR, Trinity, and long read mapping all work, but LoReAn runs into an error during the braker step. I have attached screenshots of the errors, the first is what appears on the LoReAn output, augustus keeps running for a while after this error, but then hangs. I have also attached screenshots of the error from two error files in Braker. It looks like there is an issue with the Diamond output and/or Augustus, but it is unclear to me what exactly the issue is. I have checked and all my input files are appropriately formatted.
I was successfully able to run LoReAn on both example datasets, and when I attempt to run the pipeline on my dataset, genome masking, STAR, Trinity, and long read mapping all work, but LoReAn runs into an error during the braker step. I have attached screenshots of the errors, the first is what appears on the LoReAn output, augustus keeps running for a while after this error, but then hangs. I have also attached screenshots of the error from two error files in Braker. It looks like there is an issue with the Diamond output and/or Augustus, but it is unclear to me what exactly the issue is. I have checked and all my input files are appropriately formatted.
