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bwa mem failed to locate index files #386

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@isabelluo

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@isabelluo

I am running into issues for bwa mem to locate index files.
I have two indexed fasta.files, both successfully generated .amb .ann .bwt. .pac.sa files. The one generated earlier functions perfectly but the recently indexed files is giving me trouble when running "bwa mem" [E::bwa_idx_load_from_disk] fail to locate the index files.

I have tried strace the bwa mem run, and it returns with a lot of errors. The first one I saw is "arch_prctl .....= -1 EINVAL" and followed with a lot of errors could not locate the directories....

Please help me in diagnosing this issue.

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