Merge pull request #200 from light-curve/v0.7.x

hombit · web-flow · commit 2724e35f2741 · 2023-04-12T13:06:15.000-05:00
v0.7.2
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -184,7 +184,7 @@ jobs:
           source <(cargo llvm-cov show-env --export-prefix)
           python -m venv venv
           source venv/bin/activate
-          maturin develop --extras=test
+          maturin develop --extras=test-no-bench,test
           python -m pytest
           cargo llvm-cov report --lcov --output-path lcov.info
       - name: Upload coverage to Codecov
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,7 +9,34 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
-- Feature transformations via `transoform` constructor keyword. For most of the features it could accept string with a transformation name such as 'arcsinh' or 'clipped_lg', `True` or 'default' for the default transformation, `None` or `False` for no transformation https://github.com/light-curve/light-curve-python/issues/184 https://github.com/light-curve/light-curve-python/pull/188
+--
+
+### Changed
+
+--
+
+### Deprecated
+
+--
+
+### Removed
+
+--
+
+### Fixed
+
+--
+
+### Security
+
+--
+
+
+## [0.7.2] 2023-04-12
+
+### Added
+
+- Feature transformations via `transform` constructor keyword. For most of the features it could accept string with a transformation name such as 'arcsinh' or 'clipped_lg', `True` or 'default' for the default transformation, `None` or `False` for no transformation https://github.com/light-curve/light-curve-python/issues/184 https://github.com/light-curve/light-curve-python/pull/188
 - Binary wheels for x86_64 Windows built with no Ceres nor GSL features https://github.com/light-curve/light-curve-python/issues/12 https://github.com/light-curve/light-curve-python/pull/185
 - `enum-iterator` crate dependency https://github.com/light-curve/light-curve-python/pull/188
 - CI: code coverage with `codecov` https://github.com/light-curve/light-curve-python/pull/197
@@ -28,18 +55,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - `BazinFit` and `VillarFit` constructors will not accept `None` for `mcmc_niter`, `ceres_niter`, and `lmsder_niter` arguments in the future, just do not specify them to use defaults instead. https://github.com/light-curve/light-curve-python/pull/195
 - `Periodogram` constructor will not accept `None` for `peaks`, `resolution`, `max_freq_factor`, `nyquist` and `fast` in the future, just do not specify them to use defaults instead. https://github.com/light-curve/light-curve-python/pull/195
 
-### Removed
-
---
-
 ### Fixed
 
 - `Bins` feature had non-optimal lower boundary check for time series length: it checked if it is at least unity for any underlying features. Now it takes underlying feature requirements into account. It was fixed by updating `light-curve-feature` to v0.5.5.
 
-### Security
-
---
-
 
 ## [0.7.1] 2023-03-17
 
diff --git a/light-curve/Cargo.lock b/light-curve/Cargo.lock
diff --git a/light-curve/Cargo.toml b/light-curve/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "light-curve-python"
-version = "0.7.1"
+version = "0.7.2"
 authors = ["Konstantin Malanchev <hombit@gmail.com>", "Anastasia Lavrukhina <lavrukhina.ad@gmail.com>"]
 description = "Feature extractor from noisy time series"
 readme = "README.md"
diff --git a/light-curve/README.md b/light-curve/README.md
@@ -27,7 +27,7 @@ We provide binary wheels via [PyPi](https://pypi.org/project/light-curve/) for n
 | **ppc64le** | wheel       | not tested (no Rust toolchain) | —                                                              | —                                                                    |
 
 - "wheel": binary wheel is available on pypi.org, local building is not required for the platform, the only pre-requirement is a recent `pip` version. For Linux x86-64 we provide binary wheels built with Intel MKL for better periodogram performance, which is not a default build option. For Windows x86-64 we provide wheel with no Ceres and no GSL support, which is not a default build option.
-- "src": the package is confirmed to be built and pass unit tests locally, but testing and package building is not supported by CI. It is required to have the [GNU scientific library (GSL)](https://www.gnu.org/software/gsl/) v2.1+ and the [Rust toolchain](https://rust-lang.org) v1.57+ to install it via `pip install`.
+- "src": the package is confirmed to be built and pass unit tests locally, but testing and package building is not supported by CI. It is required to have the [GNU scientific library (GSL)](https://www.gnu.org/software/gsl/) v2.1+ and the [Rust toolchain](https://rust-lang.org) v1.62+ to install it via `pip install`.
 - "not tested": building from the source code is not tested, please report us building status via issue/PR/email.
 
 We build aarch64 macOS 12.0+ Python 3.8+ wheels locally and submit them running this command in `light-curve` directory:
diff --git a/light-curve/pyproject.toml b/light-curve/pyproject.toml
@@ -21,15 +21,19 @@ classifiers = [
 ]
 
 [project.optional-dependencies]
+test-no-bench = [
+    "pytest",
+    "markdown-pytest",
+    "pytest-benchmark",  # We need it here because we use benchmark-specific command line options
+    "pytest-subtests>=0.10",
+    "numpy",
+    "scipy",
+]
 test = [
+    "light-curve[test-no-bench]",
     "feets",
     "joblib",
-    "numpy",
     "pandas",
-    "pytest",
-    "pytest-benchmark",
-    "markdown-pytest",
-    "pytest-subtests",
 ]
 dev = [
     "light-curve[test]",
@@ -121,22 +125,6 @@ commands =
 """
 
 
-# Test
-# We skip benchmark tests, because it requires feets and its transitive
-# dependencies, which are tricky and slow to compile on marginal platforms.
-# For testing we use only platforms for which scipy binary wheels are available
-[[tool.cibuildwheel.overrides]]
-select = "cp*-manylinux_x86_64 cp*-manylinux_aarch64 cp*-macosx*"
-test-command = "pytest {package}/README.md {package}/light_curve/ {package}/tests/ --ignore {package}/tests/test_w_bench.py"
-test-requires = [
-    "pytest",
-    "pytest-benchmark",
-    "markdown-pytest",
-    "pytest-subtests",
-    "numpy",
-    "scipy",
-]
-
 [tool.cibuildwheel]
 # We use our own images which include Rust, GSL and platform-optimised FFTW
 # Manylinux CPython
@@ -191,3 +179,12 @@ environment = { "MATURIN_PEP517_ARGS" = "--locked --no-default-features --featur
 select = "*linux_x86_64"
 # We use system Ceres because it is available as a static library in our build environment
 environment = { "PATH" = "$PATH:$HOME/.cargo/bin", "MATURIN_PEP517_ARGS" = "--locked --no-default-features --features ceres-system,fftw-mkl,gsl" }
+
+# Test
+# We skip benchmark tests, because it requires feets and its transitive
+# dependencies, which are tricky and slow to compile on marginal platforms.
+# For testing we use only platforms for which scipy binary wheels are available
+[[tool.cibuildwheel.overrides]]
+select = "cp*-manylinux_x86_64 cp*-manylinux_aarch64 cp*-macosx*"
+test-command = "pytest {package}/README.md {package}/light_curve/ {package}/tests/ --ignore {package}/tests/test_w_bench.py"
+test-extras = ["test-no-bench"]
