Skip to content

Checking bgen file with bgenix, running across the issue #13

@pwu4

Description

@pwu4

Before using python (bgen_reader), I want to check the integrity of the data. (I downloaded a shared large dataset(~50G) by wget. namely, gwas_c20_b0_v3.bgen)

Do you have any clue about this? Thanks so much.

bgenix -g gwas_c20_b0_v3.bgen

Welcome to bgenix
(version: 1.1.7, revision )

(C) 2009-2017 University of Oxford

terminate called after throwing an instance of 'std::length_error'
what(): vector::_M_default_append
Aborted (core dumped)

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions