From ac216c364b09da8d8e39b08df99984c7d4a89040 Mon Sep 17 00:00:00 2001 From: antagomir Date: Mon, 23 Mar 2026 09:01:36 +0200 Subject: [PATCH] Extended author info for JointRPCA --- R/getRPCA.R | 11 +++++++++++ man/getRPCA.Rd | 11 +++++++++++ 2 files changed, 22 insertions(+) diff --git a/R/getRPCA.R b/R/getRPCA.R index e608e97c2..ed25334f7 100644 --- a/R/getRPCA.R +++ b/R/getRPCA.R @@ -110,6 +110,17 @@ #' @seealso #' \code{\link[scater:runPCA]{scater::runPCA}} #' +#' @author +#' The RPCA method is reported in Martino et al. (2020) and the +#' R/Bioconductor implementation utilizes the robust Aitchison +#' distance from \code{\link[vegan:decostand]{vegan::decostand}}. +#' +#' The Joint-RPCA method was adapted from the original +#' Python-based implementation in biocore/Gemelli by +#' Bianca Cordazzo Vargas, Liat Shenhav, and Cameron Martino. +#' The R/Bioconductor implementation was subsequently prepared by +#' Aituar Bektanov, Tuomas Borman, and Leo Lahti. +#' #' @references #' #' Martino, C. and Shenhav, L. et al. (2020) diff --git a/man/getRPCA.Rd b/man/getRPCA.Rd index 17263e4d8..d7b036a29 100644 --- a/man/getRPCA.Rd +++ b/man/getRPCA.Rd @@ -149,3 +149,14 @@ dynamics. \seealso{ \code{\link[scater:runPCA]{scater::runPCA}} } +\author{ +The RPCA method is reported in Martino et al. (2020) and the +R/Bioconductor implementation utilizes the robust Aitchison +distance from \code{\link[vegan:decostand]{vegan::decostand}}. + +The Joint-RPCA method was adapted from the original +Python-based implementation in biocore/Gemelli by +Bianca Cordazzo Vargas, Liat Shenhav, and Cameron Martino. +The R/Bioconductor implementation was subsequently prepared by +Aituar Bektanov, Tuomas Borman, and Leo Lahti. +}