Test model logic

Author: davidjurado

brats/model/mlcube/mlcube.yaml

@@ -23,5 +23,4 @@ tasks:
   infer:
   # Run implementation
     parameters:
-      inputs: {data_path: data/, parameters_file: {type: file, default: parameters.yaml}}
-      outputs: {output_path: output/}
+      inputs: {data_path: data/}

brats/model/project/mlcube.py

@@ -49,11 +49,9 @@ def example(parameters_file: str = typer.Option(..., "--parameters_file")):
 
 @app.command("infer")
 def infer(
-    data_path: str = typer.Option(..., "--data_path"),
-    output_path: str = typer.Option(..., "--output_path"),
-    parameters_file: str = typer.Option(..., "--parameters_file")
+    data_path: str = typer.Option(..., "--data_path")
 ):
-    InferTask.run(data_path, output_path, parameters_file)
+    print(data_path)
 
 
 if __name__ == "__main__":

brats/model/project/src/my_logic.py

@@ -13,7 +13,7 @@ def logic_wrapper(input_folder, output_folder):
     print("wrapper: Here you can place your own logic")
 
     # example logic
-    copyfile(input_file, output_file)
+    #copyfile(input_file, output_file)
     helper()