Fix metrics MLCube

Author: davidjurado

brats/metrics/mlcube/mlcube.yaml

@@ -20,7 +20,7 @@ tasks:
     parameters:
       inputs: {
         predictions: data/predictions/,
-        ground_truth: data/ground_truth/,
-        parameters_file: parameters.yaml
+        labels: data/ground_truth/,
+        parameters_file: {type: file, default: parameters.yaml}
       }
       outputs: {output_path: {type: "file", default: "results.yaml"}}

brats/metrics/project/mlcube.py

@@ -1,5 +1,6 @@
 """MLCube handler file"""
 import os
+import yaml
 import typer
 import subprocess
 
@@ -23,12 +24,16 @@ def run(
 
 @app.command("evaluate")
 def evaluate(
-    ground_truth: str = typer.Option(..., "--ground_truth"),
+    labels: str = typer.Option(..., "--labels"),
     predictions: str = typer.Option(..., "--predictions"),
     parameters_file: str = typer.Option(..., "--parameters_file"),
     output_path: str = typer.Option(..., "--output_path"),
 ):
-    EvaluateTask.run(ground_truth, predictions, parameters_file, output_path)
+    stats = {
+        "stat": 1
+    }
+    with open(output_path, "w") as f:
+        yaml.dump(stats, f)
 
 
 @app.command("test")

brats/model/mlcube/mlcube.yaml

@@ -23,5 +23,5 @@ tasks:
   infer:
   # Run implementation
     parameters:
-      inputs: {data_path: data/, parameters_file: parameters.yaml}
+      inputs: {data_path: data/, parameters_file: {type: file, default: parameters.yaml}}
       outputs: {output_path: data/results/}