MAINT: Complete deprecations (#13504)

Author: larsoner

mne/export/tests/test_export.py

@@ -536,7 +536,9 @@ def test_export_raw_edf_does_not_fail_on_empty_header_fields(tmp_path):
     raw.export(tmp_path / "test.edf", add_ch_type=True)
 
 
-@pytest.mark.skipif(not check_version("eeglabio", "0.1.2"), reason="fixed by 0.1.2")
+@pytest.mark.skipif(
+    not check_version("eeglabio", "0.1.2"), reason="fixed by eeglabio 0.1.2"
+)
 @pytest.mark.parametrize("preload", (True, False))
 def test_export_epochs_eeglab(tmp_path, preload):
     """Test saving an Epochs instance to EEGLAB's set format."""
@@ -581,7 +583,6 @@ def test_export_epochs_eeglab(tmp_path, preload):
         epochs.export(Path(temp_fname), overwrite=True)
 
 
-@pytest.mark.filterwarnings("ignore::FutureWarning")
 @testing.requires_testing_data
 @pytest.mark.parametrize("fmt", ("auto", "mff"))
 @pytest.mark.parametrize("do_history", (True, False))
@@ -640,7 +641,6 @@ def test_export_evokeds_to_mff(tmp_path, fmt, do_history):
     evoked[0].export(export_fname, overwrite=True)
 
 
-@pytest.mark.filterwarnings("ignore::FutureWarning")
 @testing.requires_testing_data
 def test_export_to_mff_no_device():
     """Test no device type throws ValueError."""
@@ -652,7 +652,6 @@ def test_export_to_mff_no_device():
         export_evokeds("output.mff", evoked)
 
 
-@pytest.mark.filterwarnings("ignore::FutureWarning")
 def test_export_to_mff_incompatible_sfreq():
     """Test non-whole number sampling frequency throws ValueError."""
     pytest.importorskip("mffpy", "0.5.7")

mne/forward/_field_interpolation.py

@@ -22,7 +22,7 @@
 from ..fixes import _safe_svd
 from ..surface import get_head_surf, get_meg_helmet_surf
 from ..transforms import _find_trans, transform_surface_to
-from ..utils import _check_fname, _check_option, _pl, _reg_pinv, logger, verbose, warn
+from ..utils import _check_fname, _check_option, _pl, _reg_pinv, logger, verbose
 from ._lead_dots import (
     _do_cross_dots,
     _do_self_dots,
@@ -444,11 +444,11 @@ def make_field_map(
     subject=None,
     subjects_dir=None,
     ch_type=None,
+    *,
     mode="fast",
     meg_surf="helmet",
-    origin=None,
+    origin="auto",
     n_jobs=None,
-    *,
     upsampling=1,
     head_source=("bem", "head"),
     verbose=None,
@@ -504,15 +504,6 @@ def make_field_map(
         The surface maps to be used for field plots. The list contains
         separate ones for MEG and EEG (if both MEG and EEG are present).
     """
-    if origin is None:
-        warn_message = (
-            'Default value for origin is "(0.0, 0.0, 0.04)" in version 1.11 '
-            'but will be changed to "auto" in 1.12. Set the origin parameter '
-            "explicitly to avoid this warning."
-        )
-        warn(warn_message, FutureWarning)
-        origin = (0.0, 0.0, 0.04)
-
     info = evoked.info
 
     if ch_type is None:

mne/report/report.py

@@ -54,6 +54,7 @@
     _import_nibabel,
     _path_like,
     _pl,
+    _record_warnings,
     _safe_input,
     _validate_type,
     _verbose_safe_false,
@@ -3501,9 +3502,8 @@ def _add_raw(
             init_kwargs, plot_kwargs = _split_psd_kwargs(kwargs=add_psd)
             init_kwargs.setdefault("fmax", fmax)
             plot_kwargs.setdefault("show", False)
-            with warnings.catch_warnings():
+            with _record_warnings():
                 # SciPy warning about too short a data segment given the window size
-                warnings.simplefilter(action="ignore", category=FutureWarning)
                 fig = raw.compute_psd(**init_kwargs).plot(**plot_kwargs)
             self._add_figure(
                 fig=fig,

mne/source_space/_source_space.py

@@ -2824,7 +2824,7 @@ def _do_src_distances(con, vertno, run_inds, limit):
     return d, min_idx, min_dist
 
 
-# XXX this should probably be deprecated because it returns surface Labels,
+# XXX this should probably be removed because it returns surface Labels,
 # and probably isn't the way to go moving forward
 # XXX this also assumes that the first two source spaces are surf without
 # checking, which might not be the case (could be all volumes)

tools/dev/Makefile

@@ -27,4 +27,4 @@ clean:
 	@rm bug-reports-12-to-2-months-old.json || true
 
 dep:
-	cd ../../ && git grep -iI "\(deprecat\|futurewarning\)" -- ':!*.js' ':!*/conftest.py' ':!*/docs.py' ':!*/test_docs.py' ':!*/utils/__init__.pyi' mne/
+	cd ../../ && git grep -iI "\(deprecat\|futurewarning\|TODO VERSION\)" -- ':!*.js' ':!*/conftest.py' ':!*/docs.py' ':!*/test_docs.py' ':!*/utils/__init__.pyi' mne/