From 588ae9a259a6ec0f29b56f4b695e485bb0d5c4d5 Mon Sep 17 00:00:00 2001 From: Javier Torres Date: Fri, 24 Apr 2026 09:19:14 +0200 Subject: [PATCH 1/3] Add semantic search support to server store --- server/backend/pyproject.toml | 7 + server/backend/src/cq_server/app.py | 28 +- server/backend/src/cq_server/auth.py | 8 +- server/backend/src/cq_server/review.py | 44 +- server/backend/src/cq_server/semsearch.py | 120 +++ server/backend/src/cq_server/store.py | 87 +- server/backend/tests/test_app.py | 163 +++- server/backend/tests/test_store.py | 341 +++---- server/backend/uv.lock | 1058 +++++++++++---------- 9 files changed, 1090 insertions(+), 766 deletions(-) create mode 100644 server/backend/src/cq_server/semsearch.py diff --git a/server/backend/pyproject.toml b/server/backend/pyproject.toml index 50ca7dc..cc3c811 100644 --- a/server/backend/pyproject.toml +++ b/server/backend/pyproject.toml @@ -16,6 +16,13 @@ dependencies = [ "cq-sdk~=0.6.1", ] +[project.optional-dependencies] +semsearch = [ + "sqlite_vec", + "numpy", + "httpx", +] + [project.scripts] cq-server = "cq_server.app:main" diff --git a/server/backend/src/cq_server/app.py b/server/backend/src/cq_server/app.py index 9a851e3..d237516 100644 --- a/server/backend/src/cq_server/app.py +++ b/server/backend/src/cq_server/app.py @@ -89,7 +89,7 @@ def health() -> dict[str, str]: @api_router.get("/query") -def query_units( +async def query_units( domains: Annotated[list[str], Query()], languages: Annotated[list[str] | None, Query()] = None, frameworks: Annotated[list[str] | None, Query()] = None, @@ -97,11 +97,11 @@ def query_units( ) -> list[KnowledgeUnit]: """Search knowledge units by domain tags with relevance ranking.""" store = _get_store() - return store.query(domains, languages=languages, frameworks=frameworks, limit=limit) + return await store.query(domains, languages=languages, frameworks=frameworks, limit=limit) @api_router.post("/propose", status_code=201) -def propose_unit(request: ProposeRequest) -> KnowledgeUnit: +async def propose_unit(request: ProposeRequest) -> KnowledgeUnit: """Submit a new knowledge unit.""" store = _get_store() normalized = normalize_domains(request.domains) @@ -114,42 +114,42 @@ def propose_unit(request: ProposeRequest) -> KnowledgeUnit: tier=Tier.PRIVATE, created_by=request.created_by, ) - store.insert(unit) + await store.insert(unit) return unit @api_router.post("/confirm/{unit_id}") -def confirm_unit(unit_id: str) -> KnowledgeUnit: +async def confirm_unit(unit_id: str) -> KnowledgeUnit: """Confirm a knowledge unit, boosting its confidence.""" store = _get_store() - unit = store.get(unit_id) + unit = await store.get(unit_id) if unit is None: raise HTTPException(status_code=404, detail="Knowledge unit not found") confirmed = apply_confirmation(unit) - store.update(confirmed) + await store.update(confirmed) return confirmed @api_router.post("/flag/{unit_id}") -def flag_unit(unit_id: str, request: FlagRequest) -> KnowledgeUnit: +async def flag_unit(unit_id: str, request: FlagRequest) -> KnowledgeUnit: """Flag a knowledge unit, reducing its confidence.""" store = _get_store() - unit = store.get(unit_id) + unit = await store.get(unit_id) if unit is None: raise HTTPException(status_code=404, detail="Knowledge unit not found") flagged = apply_flag(unit, request.reason) - store.update(flagged) + await store.update(flagged) return flagged @api_router.get("/stats") -def stats() -> StatsResponse: +async def stats() -> StatsResponse: """Return store statistics.""" store = _get_store() return StatsResponse( - total_units=store.count(), - tiers=store.counts_by_tier(), - domains=store.domain_counts(), + total_units=await store.count(), + tiers=await store.counts_by_tier(), + domains=await store.domain_counts(), ) diff --git a/server/backend/src/cq_server/auth.py b/server/backend/src/cq_server/auth.py index da27080..09bd628 100644 --- a/server/backend/src/cq_server/auth.py +++ b/server/backend/src/cq_server/auth.py @@ -103,7 +103,7 @@ def get_current_user(request: Request) -> str: @router.post("/login") -def login(request: LoginRequest, store: RemoteStore = Depends(get_store)) -> LoginResponse: +async def login(request: LoginRequest, store: RemoteStore = Depends(get_store)) -> LoginResponse: """Authenticate a user and return a JWT token. Args: @@ -116,7 +116,7 @@ def login(request: LoginRequest, store: RemoteStore = Depends(get_store)) -> Log Raises: HTTPException: With status 401 if credentials are invalid. """ - user = store.get_user(request.username) + user = await store.get_user(request.username) if user is None or not verify_password(request.password, user["password_hash"]): raise HTTPException(status_code=401, detail="Invalid username or password") token = create_token(request.username, secret=_get_jwt_secret()) @@ -124,7 +124,7 @@ def login(request: LoginRequest, store: RemoteStore = Depends(get_store)) -> Log @router.get("/me") -def me(username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store)) -> MeResponse: +async def me(username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store)) -> MeResponse: """Return the current user's info. Args: @@ -137,7 +137,7 @@ def me(username: str = Depends(get_current_user), store: RemoteStore = Depends(g Raises: HTTPException: With status 404 if the user no longer exists. """ - user = store.get_user(username) + user = await store.get_user(username) if user is None: raise HTTPException(status_code=404, detail="User not found") return MeResponse(username=user["username"], created_at=user["created_at"]) diff --git a/server/backend/src/cq_server/review.py b/server/backend/src/cq_server/review.py index 389df78..676b247 100644 --- a/server/backend/src/cq_server/review.py +++ b/server/backend/src/cq_server/review.py @@ -85,7 +85,7 @@ def _build_decision(unit_id: str, row: dict[str, str | None]) -> ReviewDecisionR @router.get("/queue") -def review_queue( +async def review_queue( limit: int = 20, offset: int = 0, _user: str = Depends(get_current_user), @@ -102,8 +102,8 @@ def review_queue( Returns: A paginated list of pending knowledge units with review metadata. """ - items = store.pending_queue(limit=limit, offset=offset) - total = store.pending_count() + items = await store.pending_queue(limit=limit, offset=offset) + total = await store.pending_count() return ReviewQueueResponse( items=[ ReviewItem( @@ -121,7 +121,7 @@ def review_queue( @router.post("/{unit_id}/approve") -def approve_unit( +async def approve_unit( unit_id: str, username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), @@ -140,19 +140,19 @@ def approve_unit( HTTPException: With status 404 if the unit does not exist. HTTPException: With status 409 if the unit has already been reviewed. """ - status = store.get_review_status(unit_id) + status = await store.get_review_status(unit_id) if status is None: raise HTTPException(status_code=404, detail="Knowledge unit not found") if status["status"] != "pending": raise HTTPException(status_code=409, detail=f"Knowledge unit already {status['status']}") - store.set_review_status(unit_id, "approved", username) - updated = store.get_review_status(unit_id) + await store.set_review_status(unit_id, "approved", username) + updated = await store.get_review_status(unit_id) assert updated is not None # Unit exists; we just wrote to it. return _build_decision(unit_id, updated) @router.post("/{unit_id}/reject") -def reject_unit( +async def reject_unit( unit_id: str, username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), @@ -171,19 +171,19 @@ def reject_unit( HTTPException: With status 404 if the unit does not exist. HTTPException: With status 409 if the unit has already been reviewed. """ - status = store.get_review_status(unit_id) + status = await store.get_review_status(unit_id) if status is None: raise HTTPException(status_code=404, detail="Knowledge unit not found") if status["status"] != "pending": raise HTTPException(status_code=409, detail=f"Knowledge unit already {status['status']}") - store.set_review_status(unit_id, "rejected", username) - updated = store.get_review_status(unit_id) + await store.set_review_status(unit_id, "rejected", username) + updated = await store.get_review_status(unit_id) assert updated is not None # Unit exists; we just wrote to it. return _build_decision(unit_id, updated) @router.get("/stats") -def review_stats( +async def review_stats( _user: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), ) -> ReviewStatsResponse: @@ -197,24 +197,24 @@ def review_stats( Aggregated counts by status, domain distribution, confidence distribution, recent activity, and daily trend data. """ - counts = store.counts_by_status() + counts = await store.counts_by_status() return ReviewStatsResponse( counts={ "pending": counts.get("pending", 0), "approved": counts.get("approved", 0), "rejected": counts.get("rejected", 0), }, - domains=store.domain_counts(), - confidence_distribution=store.confidence_distribution(), - recent_activity=store.recent_activity(), + domains=await store.domain_counts(), + confidence_distribution=await store.confidence_distribution(), + recent_activity=await store.recent_activity(), trends=TrendsResponse( - daily=[DailyCount(**d) for d in store.daily_counts()], + daily=[DailyCount(**d) for d in await store.daily_counts()], ), ) @router.get("/units") -def list_units( +async def list_units( domain: str | None = None, confidence_min: float | None = None, confidence_max: float | None = None, @@ -238,7 +238,7 @@ def list_units( Returns: List of knowledge units with review metadata. """ - items = store.list_units( + items = await store.list_units( domain=domain, confidence_min=confidence_min, confidence_max=confidence_max, @@ -257,7 +257,7 @@ def list_units( @router.get("/{unit_id}") -def get_unit( +async def get_unit( unit_id: str, _user: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), @@ -275,10 +275,10 @@ def get_unit( Raises: HTTPException: With status 404 if the unit does not exist. """ - ku = store.get_any(unit_id) + ku = await store.get_any(unit_id) if ku is None: raise HTTPException(status_code=404, detail="Knowledge unit not found") - review = store.get_review_status(unit_id) + review = await store.get_review_status(unit_id) assert review is not None # Unit exists; get_any just returned it. return ReviewItem( knowledge_unit=ku, diff --git a/server/backend/src/cq_server/semsearch.py b/server/backend/src/cq_server/semsearch.py new file mode 100644 index 0000000..2a9b8d0 --- /dev/null +++ b/server/backend/src/cq_server/semsearch.py @@ -0,0 +1,120 @@ +import logging +import os +import sqlite3 +import numpy as np + +from cq.models import KnowledgeUnit + +logger = logging.getLogger(__name__) + +_ENABLED = False +_DIM = int(os.environ.get("SEMSEARCH_EMBEDDING_DIM", 768)) + + +_TOKEN_EMBEDDING_URL = os.environ.get("TOKEN_EMBEDDING_URL", "http://localhost:8080") +if _TOKEN_EMBEDDING_URL: + try: + import sqlite_vec + from httpx import AsyncClient + _ENABLED = True + + logger.info(f"Token embedding enabled using encoderfile endpoint at {_TOKEN_EMBEDDING_URL}") + except ImportError: + logger.warning( + "TOKEN_EMBEDDING_URL is set but required packages are not installed; " + "semantic search will be unavailable. To enable, install cq with " + "the 'embedding' extra: pip install cq-sdk[embedding]", + exc_info=True, + ) + + +_VEC_SCHEMA_SQL = """ +CREATE VIRTUAL TABLE IF NOT EXISTS knowledge_units_vec + USING vec0( + id TEXT PRIMARY KEY, + embedding float[{dim}] + ); +""" + +_VEC_SEARCH_SQL = """ + SELECT ku.data + FROM knowledge_units_vec vec + JOIN knowledge_units ku ON ku.id = vec.id + WHERE ku.status = 'approved' + AND vec.embedding MATCH ? + AND k = ? + ORDER BY vec.distance +""" + +_VEC_DELETE_SQL = "DELETE FROM knowledge_units_vec WHERE id = ?" +_VEC_INSERT_SQL = "INSERT INTO knowledge_units_vec (id, embedding) VALUES (?, ?)" + + +async def _get_embeddings(wordlist: list[str]) -> list[np.array]: + """Get embeddings for a list of words using the embedding API.""" + if not _ENABLED: + raise RuntimeError("Semantic search is not enabled. Set TOKEN_EMBEDDING_URL and install required packages to enable.") + async with AsyncClient(base_url=_TOKEN_EMBEDDING_URL) as client: + request_data = {"inputs": wordlist} + response = await client.post("/predict", json=request_data) + response.raise_for_status() + results = response.json().get("results") + if not results: + raise RuntimeError(f"Embedding API returned no embeddings for input: {request_data}") + return [np.average(np.array([embedding.get("embedding") for embedding in embeddings["embeddings"]]), axis=0) for embeddings in results] + + +def is_enabled() -> bool: + """Return whether semantic search dependencies are available.""" + return _ENABLED + + +def _serialize_embedding(vec: np.ndarray) -> bytes: + arr = np.asarray(vec, dtype=np.float32) + if hasattr(sqlite_vec, "serialize_float32"): + return sqlite_vec.serialize_float32(arr) + return arr.tobytes() + +def load(conn: sqlite3.Connection) -> None: + if not _ENABLED: + return + conn.enable_load_extension(True) + sqlite_vec.load(conn) + conn.enable_load_extension(False) + + +def ensure_schema(conn: sqlite3.Connection) -> None: + """Create semantic search virtual table if embedding is enabled.""" + if not _ENABLED: + return + conn.executescript(_VEC_SCHEMA_SQL.format(dim=_DIM)) + + +async def upsert_unit(conn: sqlite3.Connection, unit: KnowledgeUnit) -> None: + """Insert or update a knowledge unit embedding row.""" + if not _ENABLED: + return + text = " ".join([unit.insight.summary, unit.insight.detail, unit.insight.action]).strip() + if not text: + return + embedding = (await _get_embeddings([text]))[0] + serialized = _serialize_embedding(embedding) + conn.execute(_VEC_DELETE_SQL, (unit.id,)) + conn.execute(_VEC_INSERT_SQL, (unit.id, serialized)) + + +async def query(conn: sqlite3.Connection, domains: list[str], *, limit: int = 5) -> list[KnowledgeUnit]: + """Semantic search implementation.""" + if not _ENABLED: + return [] + if not domains: + return [] + if limit <= 0: + return [] + vec_emb_search = await _get_embeddings(domains) + search_embedding = _serialize_embedding(vec_emb_search[0]) + try: + vec_rows = conn.execute(_VEC_SEARCH_SQL, (search_embedding, limit)).fetchall() + except sqlite3.OperationalError: + vec_rows = [] + return [KnowledgeUnit.model_validate_json(row[0]) for row in vec_rows] diff --git a/server/backend/src/cq_server/store.py b/server/backend/src/cq_server/store.py index 28b1c4c..b40f03d 100644 --- a/server/backend/src/cq_server/store.py +++ b/server/backend/src/cq_server/store.py @@ -16,6 +16,7 @@ from .scoring import calculate_relevance from .tables import ensure_review_columns, ensure_users_table +from . import semsearch DEFAULT_DB_PATH = Path("/data/cq.db") @@ -53,7 +54,7 @@ class RemoteStore: def __init__(self, db_path: Path | None = None) -> None: """Initialise the store, creating the database and schema if needed. - + Args: db_path: Path to the SQLite database file. Defaults to /data/cq.db. """ @@ -67,6 +68,7 @@ def __init__(self, db_path: Path | None = None) -> None: def _open_connection(self) -> sqlite3.Connection: """Open and configure a SQLite connection.""" conn = sqlite3.connect(str(self._db_path), check_same_thread=False) + semsearch.load(conn) conn.execute("PRAGMA foreign_keys = ON") conn.execute("PRAGMA journal_mode = WAL") conn.execute("PRAGMA synchronous = NORMAL") @@ -78,6 +80,8 @@ def _ensure_schema(self) -> None: self._conn.executescript(_SCHEMA_SQL) ensure_review_columns(self._conn) ensure_users_table(self._conn) + semsearch.ensure_schema(self._conn) + def _check_open(self) -> None: """Raise if the store has been closed.""" @@ -109,7 +113,7 @@ def db_path(self) -> Path: """Path to the SQLite database file.""" return self._db_path - def insert(self, unit: KnowledgeUnit) -> None: + async def insert(self, unit: KnowledgeUnit) -> None: """Insert a knowledge unit into the store. Args: @@ -137,8 +141,9 @@ def insert(self, unit: KnowledgeUnit) -> None: "INSERT INTO knowledge_unit_domains (unit_id, domain) VALUES (?, ?)", [(unit.id, d) for d in domains], ) + await semsearch.upsert_unit(self._conn, unit) - def get(self, unit_id: str) -> KnowledgeUnit | None: + async def get(self, unit_id: str) -> KnowledgeUnit | None: """Retrieve an approved knowledge unit by ID. Agent-facing: only returns KUs that have passed human review. @@ -160,7 +165,7 @@ def get(self, unit_id: str) -> KnowledgeUnit | None: return None return KnowledgeUnit.model_validate_json(row[0]) - def get_any(self, unit_id: str) -> KnowledgeUnit | None: + async def get_any(self, unit_id: str) -> KnowledgeUnit | None: """Retrieve a knowledge unit by ID regardless of review status. Internal use only — review endpoints and activity feed. @@ -181,7 +186,7 @@ def get_any(self, unit_id: str) -> KnowledgeUnit | None: return None return KnowledgeUnit.model_validate_json(row[0]) - def get_review_status(self, unit_id: str) -> dict[str, str | None] | None: + async def get_review_status(self, unit_id: str) -> dict[str, str | None] | None: """Return review metadata for a knowledge unit. Args: @@ -201,7 +206,7 @@ def get_review_status(self, unit_id: str) -> dict[str, str | None] | None: return None return {"status": row[0], "reviewed_by": row[1], "reviewed_at": row[2]} - def set_review_status(self, unit_id: str, status: str, reviewed_by: str) -> None: + async def set_review_status(self, unit_id: str, status: str, reviewed_by: str) -> None: """Update the review status of a knowledge unit. Args: @@ -222,7 +227,7 @@ def set_review_status(self, unit_id: str, status: str, reviewed_by: str) -> None if cursor.rowcount == 0: raise KeyError(f"Knowledge unit not found: {unit_id}") - def update(self, unit: KnowledgeUnit) -> None: + async def update(self, unit: KnowledgeUnit) -> None: """Replace an existing knowledge unit in the store. Args: @@ -253,8 +258,9 @@ def update(self, unit: KnowledgeUnit) -> None: "INSERT INTO knowledge_unit_domains (unit_id, domain) VALUES (?, ?)", [(unit.id, d) for d in domains], ) + await semsearch.upsert_unit(self._conn, unit) - def query( + async def query( self, domains: list[str], *, @@ -262,22 +268,7 @@ def query( frameworks: list[str] | None = None, limit: int = 5, ) -> list[KnowledgeUnit]: - """Search for knowledge units by domain tags with relevance ranking. - - Args: - domains: Domain tags to search for. - languages: Optional language ranking signal. KUs matching any - listed language rank higher but non-matching KUs are still returned. - frameworks: Optional framework ranking signal. KUs matching any - listed framework rank higher but non-matching KUs are still returned. - limit: Maximum number of results to return. Must be positive. - - Returns: - Knowledge units ranked by relevance * confidence, descending. - - Raises: - ValueError: If limit is not positive. - """ + """Async query that combines semantic and domain matches.""" self._check_open() if limit <= 0: raise ValueError("limit must be positive") @@ -287,7 +278,12 @@ def query( normalized = normalize_domains(domains) if not normalized: return [] - # Safe: placeholders is only '?' characters, never user input. + + try: + semantic_units = await semsearch.query(self._conn, normalized, limit=limit) + except Exception: + semantic_units = [] + placeholders = ",".join("?" for _ in normalized) sql = f""" SELECT ku.data @@ -302,10 +298,13 @@ def query( with self._lock: rows = self._conn.execute(sql, normalized).fetchall() - # PoC: all filtering and scoring is in-memory after deserialization. - # For larger stores, push coarse filters into SQL. - units = [KnowledgeUnit.model_validate_json(row[0]) for row in rows] + semantic_rank = {unit.id: idx for idx, unit in enumerate(semantic_units)} + units_by_id: dict[str, KnowledgeUnit] = {unit.id: unit for unit in semantic_units} + for row in rows: + unit = KnowledgeUnit.model_validate_json(row[0]) + units_by_id[unit.id] = unit + units = list(units_by_id.values()) scored = [] for unit in units: relevance = calculate_relevance( @@ -314,19 +313,21 @@ def query( query_languages=languages, query_frameworks=frameworks, ) - scored.append((relevance * unit.evidence.confidence, unit)) + # Keep semantic ordering as a stable tiebreaker when lexical relevance ties. + sem_idx = semantic_rank.get(unit.id, 10**9) + scored.append((relevance * unit.evidence.confidence, sem_idx, unit)) - scored.sort(key=lambda pair: (pair[0], pair[1].id), reverse=True) - return [unit for _, unit in scored[:limit]] + scored.sort(key=lambda item: (-item[0], item[1], item[2].id)) + return [unit for _, _, unit in scored[:limit]] - def count(self) -> int: + async def count(self) -> int: """Return the total number of knowledge units in the store.""" self._check_open() with self._lock: row = self._conn.execute("SELECT COUNT(*) FROM knowledge_units").fetchone() return row[0] - def domain_counts(self) -> dict[str, int]: + async def domain_counts(self) -> dict[str, int]: """Return the count of approved knowledge units per domain tag.""" self._check_open() with self._lock: @@ -339,7 +340,7 @@ def domain_counts(self) -> dict[str, int]: ).fetchall() return {row[0]: row[1] for row in rows} - def pending_queue(self, *, limit: int = 20, offset: int = 0) -> list[dict[str, Any]]: + async def pending_queue(self, *, limit: int = 20, offset: int = 0) -> list[dict[str, Any]]: """Return pending KUs with review metadata, oldest first. Args: @@ -368,21 +369,21 @@ def pending_queue(self, *, limit: int = 20, offset: int = 0) -> list[dict[str, A for row in rows ] - def pending_count(self) -> int: + async def pending_count(self) -> int: """Return the number of pending KUs.""" self._check_open() with self._lock: row = self._conn.execute("SELECT COUNT(*) FROM knowledge_units WHERE status = 'pending'").fetchone() return row[0] - def counts_by_status(self) -> dict[str, int]: + async def counts_by_status(self) -> dict[str, int]: """Return KU counts grouped by review status.""" self._check_open() with self._lock: rows = self._conn.execute("SELECT status, COUNT(*) FROM knowledge_units GROUP BY status").fetchall() return {row[0]: row[1] for row in rows} - def counts_by_tier(self) -> dict[str, int]: + async def counts_by_tier(self) -> dict[str, int]: """Return approved KU counts grouped by tier.""" self._check_open() with self._lock: @@ -391,7 +392,7 @@ def counts_by_tier(self) -> dict[str, int]: ).fetchall() return {row[0]: row[1] for row in rows} - def list_units( + async def list_units( self, *, domain: str | None = None, @@ -462,7 +463,7 @@ def list_units( break return results - def create_user(self, username: str, password_hash: str) -> None: + async def create_user(self, username: str, password_hash: str) -> None: """Insert a new user. Args: @@ -480,7 +481,7 @@ def create_user(self, username: str, password_hash: str) -> None: (username, password_hash, now), ) - def get_user(self, username: str) -> dict[str, str] | None: + async def get_user(self, username: str) -> dict[str, str] | None: """Retrieve a user by username. Args: @@ -500,7 +501,7 @@ def get_user(self, username: str) -> dict[str, str] | None: return None return {"username": row[0], "password_hash": row[1], "created_at": row[2]} - def confidence_distribution(self) -> dict[str, int]: + async def confidence_distribution(self) -> dict[str, int]: """Return confidence distribution buckets for approved KUs.""" self._check_open() with self._lock: @@ -519,7 +520,7 @@ def confidence_distribution(self) -> dict[str, int]: buckets["0.8-1.0"] += 1 return buckets - def recent_activity(self, limit: int = 20) -> list[dict[str, Any]]: + async def recent_activity(self, limit: int = 20) -> list[dict[str, Any]]: """Return recent activity as one event per knowledge unit. Each KU appears once: reviewed KUs show as approved/rejected, @@ -568,7 +569,7 @@ def recent_activity(self, limit: int = 20) -> list[dict[str, Any]]: activity.sort(key=lambda e: e.get("timestamp", ""), reverse=True) return activity[:limit] - def daily_counts(self, *, days: int = 30) -> list[dict[str, Any]]: + async def daily_counts(self, *, days: int = 30) -> list[dict[str, Any]]: """Return daily proposal and approval counts with contiguous dates. Returns one entry per day from the earliest activity (within the diff --git a/server/backend/tests/test_app.py b/server/backend/tests/test_app.py index cff29ce..1de93ad 100644 --- a/server/backend/tests/test_app.py +++ b/server/backend/tests/test_app.py @@ -1,6 +1,7 @@ """Tests for the cq remote API endpoints.""" from collections.abc import Iterator +import asyncio from pathlib import Path from typing import Any @@ -8,6 +9,7 @@ from fastapi.testclient import TestClient from cq_server.app import app +from cq_server import semsearch @pytest.fixture() @@ -30,23 +32,23 @@ def _propose_payload(**overrides: Any) -> dict[str, Any]: return {**defaults, **overrides} -def _approve_unit(client: TestClient, unit_id: str) -> None: +async def _approve_unit(client: TestClient, unit_id: str) -> None: """Approve a unit via the store for testing.""" from cq_server.app import _get_store store = _get_store() - store.set_review_status(unit_id, "approved", "test-reviewer") + await store.set_review_status(unit_id, "approved", "test-reviewer") class TestHealth: - def test_health_returns_ok(self, client: TestClient) -> None: + async def test_health_returns_ok(self, client: TestClient) -> None: resp = client.get("/health") assert resp.status_code == 200 assert resp.json() == {"status": "ok"} class TestPropose: - def test_propose_creates_unit(self, client: TestClient) -> None: + async def test_propose_creates_unit(self, client: TestClient) -> None: resp = client.post("/propose", json=_propose_payload()) assert resp.status_code == 201 body = resp.json() @@ -55,7 +57,7 @@ def test_propose_creates_unit(self, client: TestClient) -> None: assert body["insight"]["summary"] == "Use connection pooling" assert body["evidence"]["confidence"] == 0.5 - def test_propose_with_context(self, client: TestClient) -> None: + async def test_propose_with_context(self, client: TestClient) -> None: payload = _propose_payload( context={"languages": ["python"], "frameworks": ["fastapi"]}, ) @@ -65,17 +67,17 @@ def test_propose_with_context(self, client: TestClient) -> None: assert "python" in body["context"]["languages"] assert "fastapi" in body["context"]["frameworks"] - def test_propose_with_empty_domains_rejected(self, client: TestClient) -> None: + async def test_propose_with_empty_domains_rejected(self, client: TestClient) -> None: payload = _propose_payload(domains=[]) resp = client.post("/propose", json=payload) assert resp.status_code == 422 - def test_propose_with_whitespace_only_domains_rejected(self, client: TestClient) -> None: + async def test_propose_with_whitespace_only_domains_rejected(self, client: TestClient) -> None: payload = _propose_payload(domains=[" ", ""]) resp = client.post("/propose", json=payload) assert resp.status_code == 422 - def test_propose_normalizes_domains(self, client: TestClient) -> None: + async def test_propose_normalizes_domains(self, client: TestClient) -> None: payload = _propose_payload(domains=["API", " Databases "]) resp = client.post("/propose", json=payload) assert resp.status_code == 201 @@ -83,34 +85,34 @@ def test_propose_normalizes_domains(self, client: TestClient) -> None: class TestQuery: - def _insert_unit(self, client: TestClient, **overrides: Any) -> dict[str, Any]: + async def _insert_unit(self, client: TestClient, **overrides: Any) -> dict[str, Any]: resp = client.post("/propose", json=_propose_payload(**overrides)) assert resp.status_code == 201 body = resp.json() - _approve_unit(client, body["id"]) + await _approve_unit(client, body["id"]) return body - def test_query_returns_matching_units(self, client: TestClient) -> None: - self._insert_unit(client, domains=["databases"]) + async def test_query_returns_matching_units(self, client: TestClient) -> None: + await self._insert_unit(client, domains=["databases"]) resp = client.get("/query", params={"domains": ["databases"]}) assert resp.status_code == 200 results = resp.json() assert len(results) == 1 assert results[0]["domains"] == ["databases"] - def test_query_returns_empty_for_no_match(self, client: TestClient) -> None: - self._insert_unit(client, domains=["databases"]) + async def test_query_returns_empty_for_no_match(self, client: TestClient) -> None: + await self._insert_unit(client, domains=["databases"]) resp = client.get("/query", params={"domains": ["networking"]}) assert resp.status_code == 200 assert resp.json() == [] - def test_query_boosts_matching_language(self, client: TestClient) -> None: - self._insert_unit( + async def test_query_boosts_matching_language(self, client: TestClient) -> None: + await self._insert_unit( client, domains=["web"], context={"languages": ["python"], "frameworks": []}, ) - self._insert_unit( + await self._insert_unit( client, domains=["web"], context={"languages": ["go"], "frameworks": []}, @@ -121,18 +123,18 @@ def test_query_boosts_matching_language(self, client: TestClient) -> None: assert len(results) == 2 assert "python" in results[0]["context"]["languages"] - def test_query_boosts_any_matching_language(self, client: TestClient) -> None: - self._insert_unit( + async def test_query_boosts_any_matching_language(self, client: TestClient) -> None: + await self._insert_unit( client, domains=["web"], context={"languages": ["python"], "frameworks": []}, ) - self._insert_unit( + await self._insert_unit( client, domains=["web"], context={"languages": ["go"], "frameworks": []}, ) - self._insert_unit( + await self._insert_unit( client, domains=["web"], context={"languages": ["rust"], "frameworks": []}, @@ -147,66 +149,145 @@ def test_query_boosts_any_matching_language(self, client: TestClient) -> None: top_langs = {results[0]["context"]["languages"][0], results[1]["context"]["languages"][0]} assert top_langs == {"python", "go"} - def test_query_respects_limit(self, client: TestClient) -> None: + async def test_query_respects_limit(self, client: TestClient) -> None: for _ in range(3): - self._insert_unit(client, domains=["api"]) + await self._insert_unit(client, domains=["api"]) resp = client.get("/query", params={"domains": ["api"], "limit": 2}) assert resp.status_code == 200 assert len(resp.json()) == 2 - def test_query_rejects_zero_limit(self, client: TestClient) -> None: + async def test_query_rejects_zero_limit(self, client: TestClient) -> None: resp = client.get("/query", params={"domains": ["api"], "limit": 0}) assert resp.status_code == 422 + async def test_query_finds_expected_unit_across_distinct_domains(self, client: TestClient) -> None: + await self._insert_unit( + client, + domains=["astronomy"], + insight={ + "summary": "Classify exoplanets by transit depth", + "detail": "Use transit-light-curve features to identify likely exoplanets.", + "action": "Prioritize follow-up spectroscopy for high-confidence candidates.", + }, + ) + await self._insert_unit( + client, + domains=["culinary"], + insight={ + "summary": "Balance acidity in tomato sauces", + "detail": "A small amount of fat and slow simmering rounds harsh acidity.", + "action": "Adjust with olive oil and reduce over low heat.", + }, + ) + await self._insert_unit( + client, + domains=["cybersecurity"], + insight={ + "summary": "Rotate API keys on a fixed cadence", + "detail": "Short-lived credentials reduce blast radius after compromise.", + "action": "Automate key rollover every 30 days.", + }, + ) + + resp = client.get("/query", params={"domains": ["astronomy"]}) + assert resp.status_code == 200 + results = resp.json() + assert len(results) == 1 + assert results[0]["domains"] == ["astronomy"] + assert "exoplanets" in results[0]["insight"]["summary"].lower() + + async def test_query_returns_semantic_hit_without_domain_overlap(self, client: TestClient) -> None: + if not semsearch.is_enabled(): + pytest.skip("semantic dependencies are not enabled") + try: + await semsearch._get_embeddings(["connectivity check"]) + except Exception as exc: + pytest.skip(f"embedding server unavailable: {exc}") + + await self._insert_unit( + client, + domains=["astronomy"], + insight={ + "summary": "Detect exoplanets from transit dips", + "detail": "Transit photometry captures periodic brightness dips from orbiting planets.", + "action": "Prioritize stars with consistent dip timing for follow-up observations.", + }, + ) + await self._insert_unit( + client, + domains=["culinary"], + insight={ + "summary": "Build richer soups with layered aromatics", + "detail": "Sweat onions and celery before adding stock to deepen flavor.", + "action": "Bloom spices in oil before simmering.", + }, + ) + await self._insert_unit( + client, + domains=["cybersecurity"], + insight={ + "summary": "Rotate credentials after incident response", + "detail": "Credential rotation limits persistence after compromise.", + "action": "Automate revocation and key replacement workflows.", + }, + ) + + # No exact domain match exists for this query term, so a hit implies semantic retrieval. + resp = client.get("/query", params={"domains": ["exoplanet transit photometry"]}) + assert resp.status_code == 200 + results = resp.json() + assert len(results) >= 1 + assert results[0]["domains"] == ["astronomy"] + class TestConfirm: - def test_confirm_boosts_confidence(self, client: TestClient) -> None: + async def test_confirm_boosts_confidence(self, client: TestClient) -> None: created = client.post("/propose", json=_propose_payload()).json() - _approve_unit(client, created["id"]) + await _approve_unit(client, created["id"]) resp = client.post(f"/confirm/{created['id']}") assert resp.status_code == 200 body = resp.json() assert body["evidence"]["confirmations"] == 2 assert body["evidence"]["confidence"] > 0.5 - def test_confirm_pending_unit_returns_404(self, client: TestClient) -> None: + async def test_confirm_pending_unit_returns_404(self, client: TestClient) -> None: created = client.post("/propose", json=_propose_payload()).json() resp = client.post(f"/confirm/{created['id']}") assert resp.status_code == 404 - def test_confirm_missing_unit_returns_404(self, client: TestClient) -> None: + async def test_confirm_missing_unit_returns_404(self, client: TestClient) -> None: resp = client.post("/confirm/ku_nonexistent") assert resp.status_code == 404 assert "not found" in resp.json()["detail"].lower() class TestFlag: - def test_flag_reduces_confidence(self, client: TestClient) -> None: + async def test_flag_reduces_confidence(self, client: TestClient) -> None: created = client.post("/propose", json=_propose_payload()).json() - _approve_unit(client, created["id"]) + await _approve_unit(client, created["id"]) resp = client.post(f"/flag/{created['id']}", json={"reason": "stale"}) assert resp.status_code == 200 body = resp.json() assert body["evidence"]["confidence"] < 0.5 assert len(body["flags"]) == 1 - def test_flag_pending_unit_returns_404(self, client: TestClient) -> None: + async def test_flag_pending_unit_returns_404(self, client: TestClient) -> None: created = client.post("/propose", json=_propose_payload()).json() resp = client.post(f"/flag/{created['id']}", json={"reason": "stale"}) assert resp.status_code == 404 - def test_flag_missing_unit_returns_404(self, client: TestClient) -> None: + async def test_flag_missing_unit_returns_404(self, client: TestClient) -> None: resp = client.post("/flag/ku_nonexistent", json={"reason": "stale"}) assert resp.status_code == 404 - def test_flag_with_invalid_reason_rejected(self, client: TestClient) -> None: + async def test_flag_with_invalid_reason_rejected(self, client: TestClient) -> None: created = client.post("/propose", json=_propose_payload()).json() resp = client.post(f"/flag/{created['id']}", json={"reason": "invalid_reason"}) assert resp.status_code == 422 class TestStats: - def test_stats_empty_store(self, client: TestClient) -> None: + async def test_stats_empty_store(self, client: TestClient) -> None: resp = client.get("/stats") assert resp.status_code == 200 body = resp.json() @@ -214,14 +295,14 @@ def test_stats_empty_store(self, client: TestClient) -> None: assert body["tiers"] == {} assert body["domains"] == {} - def test_stats_after_inserts(self, client: TestClient) -> None: + async def test_stats_after_inserts(self, client: TestClient) -> None: from cq_server.app import _get_store r1 = client.post("/propose", json=_propose_payload(domains=["api", "auth"])) r2 = client.post("/propose", json=_propose_payload(domains=["api", "payments"])) store = _get_store() - store.set_review_status(r1.json()["id"], "approved", "tester") - store.set_review_status(r2.json()["id"], "approved", "tester") + await store.set_review_status(r1.json()["id"], "approved", "tester") + await store.set_review_status(r2.json()["id"], "approved", "tester") resp = client.get("/stats") assert resp.status_code == 200 body = resp.json() @@ -235,12 +316,12 @@ def test_stats_after_inserts(self, client: TestClient) -> None: class TestReviewLifecycleEndToEnd: """End-to-end test covering propose -> review -> query -> stats lifecycle.""" - def test_full_review_lifecycle(self, client: TestClient) -> None: + async def test_full_review_lifecycle(self, client: TestClient) -> None: from cq_server.app import _get_store from cq_server.auth import hash_password store = _get_store() - store.create_user("reviewer", hash_password("pass123")) + await store.create_user("reviewer", hash_password("pass123")) # Log in. login_resp = client.post( @@ -294,7 +375,7 @@ def test_full_review_lifecycle(self, client: TestClient) -> None: class TestEndToEnd: - def test_propose_confirm_flag_lifecycle(self, client: TestClient) -> None: + async def test_propose_confirm_flag_lifecycle(self, client: TestClient) -> None: # Propose a unit. payload = _propose_payload( domains=["api", "payments"], @@ -305,7 +386,7 @@ def test_propose_confirm_flag_lifecycle(self, client: TestClient) -> None: unit_id = created.json()["id"] # Approve the unit so it becomes queryable. - _approve_unit(client, unit_id) + await _approve_unit(client, unit_id) # Query returns the unit. resp = client.get( diff --git a/server/backend/tests/test_store.py b/server/backend/tests/test_store.py index a5b232f..ce3d93f 100644 --- a/server/backend/tests/test_store.py +++ b/server/backend/tests/test_store.py @@ -44,194 +44,215 @@ def store(tmp_path: Path) -> Iterator[RemoteStore]: s.close() -def _insert_and_approve(store: RemoteStore, **overrides: Any) -> KnowledgeUnit: +async def _insert_and_approve(store: RemoteStore, **overrides: Any) -> KnowledgeUnit: """Insert a knowledge unit and approve it for query visibility.""" unit = _make_unit(**overrides) - store.insert(unit) - store.set_review_status(unit.id, "approved", "test-reviewer") + await store.insert(unit) + await store.set_review_status(unit.id, "approved", "test-reviewer") return unit class TestInsertAndGet: - def test_insert_and_retrieve(self, store: RemoteStore) -> None: + async def test_insert_and_retrieve(self, store: RemoteStore) -> None: unit = _make_unit() - store.insert(unit) - retrieved = store.get_any(unit.id) + await store.insert(unit) + retrieved = await store.get_any(unit.id) assert retrieved == unit - def test_insert_duplicate_raises(self, store: RemoteStore) -> None: + async def test_insert_duplicate_raises(self, store: RemoteStore) -> None: unit = _make_unit() - store.insert(unit) + await store.insert(unit) with pytest.raises(sqlite3.IntegrityError): - store.insert(unit) + await store.insert(unit) - def test_returns_none_for_missing_id(self, store: RemoteStore) -> None: - assert store.get("ku_nonexistent") is None + async def test_returns_none_for_missing_id(self, store: RemoteStore) -> None: + assert await store.get("ku_nonexistent") is None - def test_insert_with_empty_domains_raises(self, store: RemoteStore) -> None: + async def test_insert_with_empty_domains_raises(self, store: RemoteStore) -> None: unit = _make_unit(domains=[" ", ""]) with pytest.raises(ValueError, match="At least one non-empty domain"): - store.insert(unit) + await store.insert(unit) class TestUpdate: - def test_update_persists_changes(self, store: RemoteStore) -> None: - unit = _insert_and_approve(store) + async def test_update_persists_changes(self, store: RemoteStore) -> None: + unit = await _insert_and_approve(store) confirmed = apply_confirmation(unit) - store.update(confirmed) - retrieved = store.get(unit.id) + await store.update(confirmed) + retrieved = await store.get(unit.id) assert retrieved is not None assert retrieved.evidence.confirmations == 2 - def test_update_missing_unit_raises(self, store: RemoteStore) -> None: + async def test_update_missing_unit_raises(self, store: RemoteStore) -> None: unit = _make_unit() with pytest.raises(KeyError, match="Knowledge unit not found"): - store.update(unit) + await store.update(unit) - def test_update_with_empty_domains_raises(self, store: RemoteStore) -> None: + async def test_update_with_empty_domains_raises(self, store: RemoteStore) -> None: unit = _make_unit(domains=["databases"]) - store.insert(unit) + await store.insert(unit) updated = unit.model_copy(update={"domains": [" "]}) with pytest.raises(ValueError, match="At least one non-empty domain"): - store.update(updated) + await store.update(updated) class TestQuery: - def test_returns_matching_units(self, store: RemoteStore) -> None: - unit = _insert_and_approve(store, domains=["databases"]) - results = store.query(["databases"]) + async def test_returns_matching_units(self, store: RemoteStore) -> None: + unit = await _insert_and_approve(store, domains=["databases"]) + results = await store.query(["databases"]) assert len(results) == 1 assert results[0].id == unit.id - def test_returns_empty_for_no_match(self, store: RemoteStore) -> None: - _insert_and_approve(store, domains=["databases"]) - assert store.query(["networking"]) == [] + async def test_returns_empty_for_no_match(self, store: RemoteStore) -> None: + await _insert_and_approve(store, domains=["databases"]) + assert await store.query(["networking"]) == [] - def test_language_filter_boosts_matching_units(self, store: RemoteStore) -> None: - py = _insert_and_approve( + async def test_language_filter_boosts_matching_units(self, store: RemoteStore) -> None: + py = await _insert_and_approve( store, domains=["web"], context=Context(languages=["python"]), ) - go = _insert_and_approve( + go = await _insert_and_approve( store, domains=["web"], context=Context(languages=["go"]), ) - results = store.query(["web"], languages=["python"]) + results = await store.query(["web"], languages=["python"]) assert len(results) == 2 assert results[0].id == py.id assert results[1].id == go.id - def test_language_filter_includes_units_without_language(self, store: RemoteStore) -> None: + async def test_language_filter_includes_units_without_language(self, store: RemoteStore) -> None: """KUs with no language set should still appear when language filter is used.""" - no_lang = _insert_and_approve(store, domains=["ci"]) - results = store.query(["ci"], languages=["python"]) + no_lang = await _insert_and_approve(store, domains=["ci"]) + results = await store.query(["ci"], languages=["python"]) assert len(results) == 1 assert results[0].id == no_lang.id - def test_framework_filter_includes_units_without_framework(self, store: RemoteStore) -> None: + async def test_framework_filter_includes_units_without_framework(self, store: RemoteStore) -> None: """KUs with no framework set should still appear when framework filter is used.""" - no_fw = _insert_and_approve(store, domains=["web"]) - results = store.query(["web"], frameworks=["fastapi"]) + no_fw = await _insert_and_approve(store, domains=["web"]) + results = await store.query(["web"], frameworks=["fastapi"]) assert len(results) == 1 assert results[0].id == no_fw.id - def test_language_filter_ranks_matching_higher(self, store: RemoteStore) -> None: + async def test_language_filter_ranks_matching_higher(self, store: RemoteStore) -> None: """KUs with matching language should rank above those without.""" - no_lang = _insert_and_approve(store, domains=["web"]) - with_lang = _insert_and_approve( + no_lang = await _insert_and_approve(store, domains=["web"]) + with_lang = await _insert_and_approve( store, domains=["web"], context=Context(languages=["python"]), ) - results = store.query(["web"], languages=["python"]) + results = await store.query(["web"], languages=["python"]) assert len(results) == 2 assert results[0].id == with_lang.id assert results[1].id == no_lang.id - def test_multiple_languages_boost_any_match(self, store: RemoteStore) -> None: + async def test_multiple_languages_boost_any_match(self, store: RemoteStore) -> None: """Querying with multiple languages boosts units matching any of them.""" - py = _insert_and_approve( + py = await _insert_and_approve( store, domains=["web"], context=Context(languages=["python"]), ) - go = _insert_and_approve( + go = await _insert_and_approve( store, domains=["web"], context=Context(languages=["go"]), ) - rust = _insert_and_approve( + rust = await _insert_and_approve( store, domains=["web"], context=Context(languages=["rust"]), ) - results = store.query(["web"], languages=["python", "go"]) + results = await store.query(["web"], languages=["python", "go"]) assert len(results) == 3 # Both python and go units rank above rust (no match). matched_ids = {results[0].id, results[1].id} assert matched_ids == {py.id, go.id} assert results[2].id == rust.id - def test_multiple_frameworks_boost_any_match(self, store: RemoteStore) -> None: + async def test_multiple_frameworks_boost_any_match(self, store: RemoteStore) -> None: """Querying with multiple frameworks boosts units matching any of them.""" - fastapi = _insert_and_approve( + fastapi = await _insert_and_approve( store, domains=["web"], context=Context(frameworks=["fastapi"]), ) - django = _insert_and_approve( + django = await _insert_and_approve( store, domains=["web"], context=Context(frameworks=["django"]), ) - flask = _insert_and_approve( + flask = await _insert_and_approve( store, domains=["web"], context=Context(frameworks=["flask"]), ) - results = store.query(["web"], frameworks=["fastapi", "django"]) + results = await store.query(["web"], frameworks=["fastapi", "django"]) assert len(results) == 3 matched_ids = {results[0].id, results[1].id} assert matched_ids == {fastapi.id, django.id} assert results[2].id == flask.id - def test_rejects_non_positive_limit(self, store: RemoteStore) -> None: + async def test_rejects_non_positive_limit(self, store: RemoteStore) -> None: with pytest.raises(ValueError, match="limit must be positive"): - store.query(["databases"], limit=0) + await store.query(["databases"], limit=0) + + async def test_combines_semantic_and_domain_results(self, store: RemoteStore, monkeypatch: pytest.MonkeyPatch) -> None: + semantic_only = await _insert_and_approve(store, domains=["astronomy"]) + domain_match = await _insert_and_approve(store, domains=["databases"]) + + async def _fake_semantic_query( + _conn: sqlite3.Connection, + _domains: list[str], + *, + limit: int = 5, + ) -> list[KnowledgeUnit]: + _ = limit + return [semantic_only] + + monkeypatch.setattr("cq_server.semsearch.query", _fake_semantic_query) + + results = await store.query(["databases"]) + + ids = {unit.id for unit in results} + assert semantic_only.id in ids + assert domain_match.id in ids class TestStats: - def test_count_empty_store(self, store: RemoteStore) -> None: - assert store.count() == 0 + async def test_count_empty_store(self, store: RemoteStore) -> None: + assert await store.count() == 0 - def test_count_after_inserts(self, store: RemoteStore) -> None: - store.insert(_make_unit(domains=["a"])) - store.insert(_make_unit(domains=["b"])) - assert store.count() == 2 + async def test_count_after_inserts(self, store: RemoteStore) -> None: + await store.insert(_make_unit(domains=["a"])) + await store.insert(_make_unit(domains=["b"])) + assert await store.count() == 2 - def test_domain_counts(self, store: RemoteStore) -> None: + async def test_domain_counts(self, store: RemoteStore) -> None: u1 = _make_unit(domains=["api", "payments"]) u2 = _make_unit(domains=["api", "auth"]) - store.insert(u1) - store.insert(u2) - store.set_review_status(u1.id, "approved", "tester") - store.set_review_status(u2.id, "approved", "tester") - counts = store.domain_counts() + await store.insert(u1) + await store.insert(u2) + await store.set_review_status(u1.id, "approved", "tester") + await store.set_review_status(u2.id, "approved", "tester") + counts = await store.domain_counts() assert counts["api"] == 2 assert counts["payments"] == 1 assert counts["auth"] == 1 class TestTierColumn: - def test_tier_column_exists_after_migration(self, store: RemoteStore) -> None: + async def test_tier_column_exists_after_migration(self, store: RemoteStore) -> None: """The tier column should exist on the knowledge_units table.""" cursor = store._conn.execute("PRAGMA table_info(knowledge_units)") columns = {row[1] for row in cursor.fetchall()} assert "tier" in columns - def test_tier_column_defaults_to_private_for_migration(self, store: RemoteStore) -> None: + async def test_tier_column_defaults_to_private_for_migration(self, store: RemoteStore) -> None: """Pre-existing rows without an explicit tier get 'private' from the column default.""" store._conn.execute( "INSERT INTO knowledge_units (id, data, created_at) VALUES (?, ?, ?)", @@ -244,56 +265,56 @@ def test_tier_column_defaults_to_private_for_migration(self, store: RemoteStore) ).fetchone() assert row[0] == "private" - def test_insert_populates_tier_from_unit(self, store: RemoteStore) -> None: + async def test_insert_populates_tier_from_unit(self, store: RemoteStore) -> None: """Insert should write the unit's tier value to the tier column.""" unit = _make_unit(tier=Tier.PRIVATE) - store.insert(unit) + await store.insert(unit) row = store._conn.execute("SELECT tier FROM knowledge_units WHERE id = ?", (unit.id,)).fetchone() assert row[0] == "private" - def test_update_syncs_tier_column(self, store: RemoteStore) -> None: + async def test_update_syncs_tier_column(self, store: RemoteStore) -> None: """Update should keep the tier column in sync with the JSON blob.""" unit = _make_unit(tier=Tier.PRIVATE) - store.insert(unit) + await store.insert(unit) updated = unit.model_copy(update={"tier": Tier.PUBLIC}) - store.update(updated) + await store.update(updated) row = store._conn.execute("SELECT tier FROM knowledge_units WHERE id = ?", (unit.id,)).fetchone() assert row[0] == "public" - def test_counts_by_tier_empty(self, store: RemoteStore) -> None: + async def test_counts_by_tier_empty(self, store: RemoteStore) -> None: """Empty store returns empty dict.""" - assert store.counts_by_tier() == {} + assert await store.counts_by_tier() == {} - def test_counts_by_tier_approved_only(self, store: RemoteStore) -> None: + async def test_counts_by_tier_approved_only(self, store: RemoteStore) -> None: """Only approved units are counted.""" u1 = _make_unit(domains=["a"], tier=Tier.PRIVATE) u2 = _make_unit(domains=["b"], tier=Tier.PRIVATE) u3 = _make_unit(domains=["c"], tier=Tier.PRIVATE) - store.insert(u1) - store.insert(u2) - store.insert(u3) - store.set_review_status(u1.id, "approved", "reviewer") - store.set_review_status(u2.id, "approved", "reviewer") - counts = store.counts_by_tier() + await store.insert(u1) + await store.insert(u2) + await store.insert(u3) + await store.set_review_status(u1.id, "approved", "reviewer") + await store.set_review_status(u2.id, "approved", "reviewer") + counts = await store.counts_by_tier() assert counts == {"private": 2} - def test_counts_by_tier_groups_correctly(self, store: RemoteStore) -> None: + async def test_counts_by_tier_groups_correctly(self, store: RemoteStore) -> None: """Counts are grouped by tier value.""" u1 = _make_unit(domains=["a"], tier=Tier.PRIVATE) u2 = _make_unit(domains=["b"], tier=Tier.PUBLIC) - store.insert(u1) - store.insert(u2) - store.set_review_status(u1.id, "approved", "reviewer") - store.set_review_status(u2.id, "approved", "reviewer") - counts = store.counts_by_tier() + await store.insert(u1) + await store.insert(u2) + await store.set_review_status(u1.id, "approved", "reviewer") + await store.set_review_status(u2.id, "approved", "reviewer") + counts = await store.counts_by_tier() assert counts == {"private": 1, "public": 1} class TestReviewStatus: - def test_inserted_unit_has_pending_status(self, store: RemoteStore) -> None: + async def test_inserted_unit_has_pending_status(self, store: RemoteStore) -> None: unit = _make_unit() - store.insert(unit) - status = store.get_review_status(unit.id) + await store.insert(unit) + status = await store.get_review_status(unit.id) assert status is not None assert status["status"] == "pending" assert status["reviewed_by"] is None @@ -301,93 +322,93 @@ def test_inserted_unit_has_pending_status(self, store: RemoteStore) -> None: class TestStatusFiltering: - def test_query_excludes_pending_units(self, store: RemoteStore) -> None: + async def test_query_excludes_pending_units(self, store: RemoteStore) -> None: unit = _make_unit(domains=["api"]) - store.insert(unit) - results = store.query(["api"]) + await store.insert(unit) + results = await store.query(["api"]) assert len(results) == 0 - def test_query_returns_approved_units(self, store: RemoteStore) -> None: + async def test_query_returns_approved_units(self, store: RemoteStore) -> None: unit = _make_unit(domains=["api"]) - store.insert(unit) - store.set_review_status(unit.id, "approved", "reviewer") - results = store.query(["api"]) + await store.insert(unit) + await store.set_review_status(unit.id, "approved", "reviewer") + results = await store.query(["api"]) assert len(results) == 1 - def test_query_excludes_rejected_units(self, store: RemoteStore) -> None: + async def test_query_excludes_rejected_units(self, store: RemoteStore) -> None: unit = _make_unit(domains=["api"]) - store.insert(unit) - store.set_review_status(unit.id, "rejected", "reviewer") - results = store.query(["api"]) + await store.insert(unit) + await store.set_review_status(unit.id, "rejected", "reviewer") + results = await store.query(["api"]) assert len(results) == 0 - def test_get_only_returns_approved_for_agents(self, store: RemoteStore) -> None: + async def test_get_only_returns_approved_for_agents(self, store: RemoteStore) -> None: unit = _make_unit() - store.insert(unit) - assert store.get(unit.id) is None + await store.insert(unit) + assert await store.get(unit.id) is None - def test_get_returns_approved_unit(self, store: RemoteStore) -> None: + async def test_get_returns_approved_unit(self, store: RemoteStore) -> None: unit = _make_unit() - store.insert(unit) - store.set_review_status(unit.id, "approved", "reviewer") - assert store.get(unit.id) is not None + await store.insert(unit) + await store.set_review_status(unit.id, "approved", "reviewer") + assert await store.get(unit.id) is not None class TestReviewQueue: - def test_pending_queue_returns_pending_units(self, store: RemoteStore) -> None: + async def test_pending_queue_returns_pending_units(self, store: RemoteStore) -> None: u1 = _make_unit(domains=["api"]) u2 = _make_unit(domains=["db"]) - store.insert(u1) - store.insert(u2) - queue = store.pending_queue(limit=20, offset=0) + await store.insert(u1) + await store.insert(u2) + queue = await store.pending_queue(limit=20, offset=0) assert len(queue) == 2 - def test_pending_queue_excludes_reviewed(self, store: RemoteStore) -> None: + async def test_pending_queue_excludes_reviewed(self, store: RemoteStore) -> None: unit = _make_unit(domains=["api"]) - store.insert(unit) - store.set_review_status(unit.id, "approved", "reviewer") - queue = store.pending_queue(limit=20, offset=0) + await store.insert(unit) + await store.set_review_status(unit.id, "approved", "reviewer") + queue = await store.pending_queue(limit=20, offset=0) assert len(queue) == 0 - def test_pending_count(self, store: RemoteStore) -> None: + async def test_pending_count(self, store: RemoteStore) -> None: u1 = _make_unit(domains=["a"]) u2 = _make_unit(domains=["b"]) - store.insert(u1) - store.insert(u2) - store.set_review_status(u1.id, "approved", "reviewer") - assert store.pending_count() == 1 + await store.insert(u1) + await store.insert(u2) + await store.set_review_status(u1.id, "approved", "reviewer") + assert await store.pending_count() == 1 - def test_counts_by_status(self, store: RemoteStore) -> None: + async def test_counts_by_status(self, store: RemoteStore) -> None: u1 = _make_unit(domains=["a"]) u2 = _make_unit(domains=["b"]) u3 = _make_unit(domains=["c"]) - store.insert(u1) - store.insert(u2) - store.insert(u3) - store.set_review_status(u1.id, "approved", "reviewer") - store.set_review_status(u2.id, "rejected", "reviewer") - counts = store.counts_by_status() + await store.insert(u1) + await store.insert(u2) + await store.insert(u3) + await store.set_review_status(u1.id, "approved", "reviewer") + await store.set_review_status(u2.id, "rejected", "reviewer") + counts = await store.counts_by_status() assert counts["approved"] == 1 assert counts["rejected"] == 1 assert counts["pending"] == 1 - def test_daily_counts(self, store: RemoteStore) -> None: - store.insert(_make_unit(domains=["a"])) - store.insert(_make_unit(domains=["b"])) - counts = store.daily_counts(days=30) + async def test_daily_counts(self, store: RemoteStore) -> None: + await store.insert(_make_unit(domains=["a"])) + await store.insert(_make_unit(domains=["b"])) + counts = await store.daily_counts(days=30) assert len(counts) >= 1 total = sum(row["proposed"] for row in counts) assert total == 2 - def test_daily_counts_gap_fills_to_today(self, store: RemoteStore) -> None: + async def test_daily_counts_gap_fills_to_today(self, store: RemoteStore) -> None: """daily_counts should return contiguous dates from the earliest entry to today.""" three_days_ago = datetime.now(UTC) - timedelta(days=3) unit = _make_unit(domains=["a"]) unit.evidence.first_observed = three_days_ago unit.evidence.last_confirmed = three_days_ago - store.insert(unit) + await store.insert(unit) - counts = store.daily_counts(days=30) + counts = await store.daily_counts(days=30) dates = [row["date"] for row in counts] today_str = datetime.now(UTC).strftime("%Y-%m-%d") @@ -403,7 +424,7 @@ def test_daily_counts_gap_fills_to_today(self, store: RemoteStore) -> None: for row in counts[1:]: assert row["proposed"] == 0 - def test_daily_counts_includes_approved(self, store: RemoteStore) -> None: + async def test_daily_counts_includes_approved(self, store: RemoteStore) -> None: """daily_counts should include approved counts grouped by reviewed_at date.""" three_days_ago = datetime.now(UTC) - timedelta(days=3) one_day_ago = datetime.now(UTC) - timedelta(days=1) @@ -411,14 +432,14 @@ def test_daily_counts_includes_approved(self, store: RemoteStore) -> None: u1 = _make_unit(domains=["a"]) u1.evidence.first_observed = three_days_ago u1.evidence.last_confirmed = three_days_ago - store.insert(u1) + await store.insert(u1) u2 = _make_unit(domains=["b"]) u2.evidence.first_observed = three_days_ago u2.evidence.last_confirmed = three_days_ago - store.insert(u2) + await store.insert(u2) - store.set_review_status(u1.id, "approved", "reviewer") + await store.set_review_status(u1.id, "approved", "reviewer") # Backdate reviewed_at to 1 day ago. with store._lock, store._conn: store._conn.execute( @@ -426,7 +447,7 @@ def test_daily_counts_includes_approved(self, store: RemoteStore) -> None: (one_day_ago.isoformat(), u1.id), ) - counts = store.daily_counts(days=30) + counts = await store.daily_counts(days=30) by_date = {row["date"]: row for row in counts} three_days_ago_str = three_days_ago.strftime("%Y-%m-%d") @@ -439,16 +460,16 @@ def test_daily_counts_includes_approved(self, store: RemoteStore) -> None: # No approvals on the proposal date. assert by_date[three_days_ago_str]["approved"] == 0 - def test_daily_counts_includes_rejected(self, store: RemoteStore) -> None: + async def test_daily_counts_includes_rejected(self, store: RemoteStore) -> None: """daily_counts should include rejected counts grouped by reviewed_at date.""" two_days_ago = datetime.now(UTC) - timedelta(days=2) unit = _make_unit(domains=["a"]) unit.evidence.first_observed = two_days_ago unit.evidence.last_confirmed = two_days_ago - store.insert(unit) + await store.insert(unit) - store.set_review_status(unit.id, "rejected", "reviewer") + await store.set_review_status(unit.id, "rejected", "reviewer") # Backdate reviewed_at to today. today = datetime.now(UTC) with store._lock, store._conn: @@ -457,7 +478,7 @@ def test_daily_counts_includes_rejected(self, store: RemoteStore) -> None: (today.isoformat(), unit.id), ) - counts = store.daily_counts(days=30) + counts = await store.daily_counts(days=30) by_date = {row["date"]: row for row in counts} today_str = today.strftime("%Y-%m-%d") @@ -468,45 +489,45 @@ def test_daily_counts_includes_rejected(self, store: RemoteStore) -> None: assert by_date[today_str]["rejected"] == 1 assert by_date[today_str]["proposed"] == 0 - def test_daily_counts_rejects_non_positive_days(self, store: RemoteStore) -> None: + async def test_daily_counts_rejects_non_positive_days(self, store: RemoteStore) -> None: with pytest.raises(ValueError, match="days must be positive"): - store.daily_counts(days=0) + await store.daily_counts(days=0) - def test_pending_queue_pagination(self, store: RemoteStore) -> None: + async def test_pending_queue_pagination(self, store: RemoteStore) -> None: for _ in range(3): - store.insert(_make_unit(domains=["a"])) - page1 = store.pending_queue(limit=2, offset=0) - page2 = store.pending_queue(limit=2, offset=2) + await store.insert(_make_unit(domains=["a"])) + page1 = await store.pending_queue(limit=2, offset=0) + page2 = await store.pending_queue(limit=2, offset=2) assert len(page1) == 2 assert len(page2) == 1 ids = {r["knowledge_unit"].id for r in page1} | {r["knowledge_unit"].id for r in page2} assert len(ids) == 3 - def test_counts_by_status_empty(self, store: RemoteStore) -> None: - counts = store.counts_by_status() + async def test_counts_by_status_empty(self, store: RemoteStore) -> None: + counts = await store.counts_by_status() assert counts == {} class TestEndToEnd: - def test_propose_confirm_flag_lifecycle(self, store: RemoteStore) -> None: - _insert_and_approve( + async def test_propose_confirm_flag_lifecycle(self, store: RemoteStore) -> None: + await _insert_and_approve( store, domains=["api", "payments"], context=Context(languages=["python"], frameworks=["fastapi"]), tier=Tier.PRIVATE, ) - results = store.query(["api", "payments"], languages=["python"]) + results = await store.query(["api", "payments"], languages=["python"]) assert len(results) == 1 assert results[0].evidence.confidence == 0.5 confirmed = apply_confirmation(results[0]) - store.update(confirmed) - results = store.query(["api", "payments"]) + 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178735 }, + { url = "https://files.pythonhosted.org/packages/6f/28/258ebab549c2bf3e64d2b0217b973467394a9cea8c42f70418ca2c5d0d2e/websockets-16.0-py3-none-any.whl", hash = "sha256:1637db62fad1dc833276dded54215f2c7fa46912301a24bd94d45d46a011ceec", size = 171598 }, ] From 9bceb0a2bc56dca5ab210f9d94c7c6aeb6d8ef5b Mon Sep 17 00:00:00 2001 From: Javier Torres Date: Fri, 24 Apr 2026 09:35:27 +0200 Subject: [PATCH 2/3] Remove default embeddings endpoint --- server/backend/src/cq_server/semsearch.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/server/backend/src/cq_server/semsearch.py b/server/backend/src/cq_server/semsearch.py index 2a9b8d0..03ca2b0 100644 --- a/server/backend/src/cq_server/semsearch.py +++ b/server/backend/src/cq_server/semsearch.py @@ -11,7 +11,7 @@ _DIM = int(os.environ.get("SEMSEARCH_EMBEDDING_DIM", 768)) -_TOKEN_EMBEDDING_URL = os.environ.get("TOKEN_EMBEDDING_URL", "http://localhost:8080") +_TOKEN_EMBEDDING_URL = os.environ.get("TOKEN_EMBEDDING_URL") if _TOKEN_EMBEDDING_URL: try: import sqlite_vec From ff6f2013f4946ff1682c5f8575052237d4d792e9 Mon Sep 17 00:00:00 2001 From: Javier Torres Date: Fri, 24 Apr 2026 10:25:32 +0200 Subject: [PATCH 3/3] Fix lint --- server/backend/src/cq_server/auth.py | 16 ++++++------ server/backend/src/cq_server/semsearch.py | 31 ++++++++++++++++++----- server/backend/src/cq_server/store.py | 7 +++-- 3 files changed, 35 insertions(+), 19 deletions(-) diff --git a/server/backend/src/cq_server/auth.py b/server/backend/src/cq_server/auth.py index 8fb1c6c..bd8c343 100644 --- a/server/backend/src/cq_server/auth.py +++ b/server/backend/src/cq_server/auth.py @@ -209,20 +209,20 @@ async def me(username: str = Depends(get_current_user), store: RemoteStore = Dep return MeResponse(username=user["username"], created_at=user["created_at"]) -def _require_user_id(store: RemoteStore, username: str) -> int: +async def _require_user_id(store: RemoteStore, username: str) -> int: """Return the integer user id for the authenticated caller. Raises: HTTPException: 404 if the user record has been removed while the JWT remains valid. """ - user = store.get_user(username) + user = await store.get_user(username) if user is None: raise HTTPException(status_code=404, detail="User not found") return int(user["id"]) @router.post("/api-keys", status_code=201) -def create_api_key_route( +async def create_api_key_route( request: CreateApiKeyRequest, username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), @@ -242,7 +242,7 @@ def create_api_key_route( duration = parse_ttl(request.ttl) except ValueError as exc: raise HTTPException(status_code=422, detail=str(exc)) from exc - user_id = _require_user_id(store, username) + user_id = await _require_user_id(store, username) if store.count_active_api_keys_for_user(user_id) >= MAX_ACTIVE_API_KEYS_PER_USER: raise HTTPException( status_code=409, @@ -265,17 +265,17 @@ def create_api_key_route( @router.get("/api-keys") -def list_api_keys_route( +async def list_api_keys_route( username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), ) -> list[ApiKeyPublic]: """Return the authenticated user's API keys. Never returns plaintext.""" - user_id = _require_user_id(store, username) + user_id = await _require_user_id(store, username) return [_to_public(row) for row in store.list_api_keys_for_user(user_id)] @router.delete("/api-keys/{key_id}", status_code=204) -def revoke_api_key_route( +async def revoke_api_key_route( key_id: str, username: str = Depends(get_current_user), store: RemoteStore = Depends(get_store), @@ -286,7 +286,7 @@ def revoke_api_key_route( 204. A 404 is returned only when the key does not exist or is owned by a different user (uniform response, no enumeration oracle). """ - user_id = _require_user_id(store, username) + user_id = await _require_user_id(store, username) if store.get_api_key_for_user(user_id=user_id, key_id=key_id) is None: raise HTTPException(status_code=404, detail="API key not found") store.revoke_api_key(user_id=user_id, key_id=key_id) diff --git a/server/backend/src/cq_server/semsearch.py b/server/backend/src/cq_server/semsearch.py index 03ca2b0..4bb7247 100644 --- a/server/backend/src/cq_server/semsearch.py +++ b/server/backend/src/cq_server/semsearch.py @@ -1,8 +1,16 @@ +"""Semantic-search helpers backed by sqlite-vec and remote token embeddings. + +This module provides optional semantic indexing and retrieval for knowledge units. +Semantic search is enabled only when `TOKEN_EMBEDDING_URL` is configured and the +embedding dependencies are installed. +""" + import logging import os import sqlite3 -import numpy as np +import numpy as np +import numpy.typing as npt from cq.models import KnowledgeUnit logger = logging.getLogger(__name__) @@ -16,6 +24,7 @@ try: import sqlite_vec from httpx import AsyncClient + _ENABLED = True logger.info(f"Token embedding enabled using encoderfile endpoint at {_TOKEN_EMBEDDING_URL}") @@ -50,18 +59,23 @@ _VEC_INSERT_SQL = "INSERT INTO knowledge_units_vec (id, embedding) VALUES (?, ?)" -async def _get_embeddings(wordlist: list[str]) -> list[np.array]: +async def _get_embeddings(wordlist: list[str]) -> list[npt.ArrayLike]: """Get embeddings for a list of words using the embedding API.""" if not _ENABLED: - raise RuntimeError("Semantic search is not enabled. Set TOKEN_EMBEDDING_URL and install required packages to enable.") - async with AsyncClient(base_url=_TOKEN_EMBEDDING_URL) as client: + raise RuntimeError( + "Semantic search is not enabled. Set TOKEN_EMBEDDING_URL and install required packages to enable." + ) + async with AsyncClient(base_url=_TOKEN_EMBEDDING_URL) as client: # ty: ignore[invalid-argument-type] request_data = {"inputs": wordlist} response = await client.post("/predict", json=request_data) response.raise_for_status() results = response.json().get("results") if not results: raise RuntimeError(f"Embedding API returned no embeddings for input: {request_data}") - return [np.average(np.array([embedding.get("embedding") for embedding in embeddings["embeddings"]]), axis=0) for embeddings in results] + return [ + np.average(np.array([embedding.get("embedding") for embedding in embeddings["embeddings"]]), axis=0) + for embeddings in results + ] def is_enabled() -> bool: @@ -69,13 +83,16 @@ def is_enabled() -> bool: return _ENABLED -def _serialize_embedding(vec: np.ndarray) -> bytes: +def _serialize_embedding(vec: npt.ArrayLike) -> bytes: + """Convert an embedding vector to sqlite-vec compatible bytes.""" arr = np.asarray(vec, dtype=np.float32) if hasattr(sqlite_vec, "serialize_float32"): - return sqlite_vec.serialize_float32(arr) + return sqlite_vec.serialize_float32(arr) # ty: ignore[invalid-argument-type] return arr.tobytes() + def load(conn: sqlite3.Connection) -> None: + """Load the sqlite-vec extension into an SQLite connection.""" if not _ENABLED: return conn.enable_load_extension(True) diff --git a/server/backend/src/cq_server/store.py b/server/backend/src/cq_server/store.py index 243cfc0..8853fa2 100644 --- a/server/backend/src/cq_server/store.py +++ b/server/backend/src/cq_server/store.py @@ -16,11 +16,10 @@ from cq.models import KnowledgeUnit +from . import semsearch from .scoring import calculate_relevance from .tables import ensure_api_keys_table, ensure_review_columns, ensure_users_table -from . import semsearch - _logger = logging.getLogger(__name__) DEFAULT_DB_PATH = Path("/data/cq.db") @@ -59,7 +58,7 @@ class RemoteStore: def __init__(self, db_path: Path | None = None) -> None: """Initialise the store, creating the database and schema if needed. - + Args: db_path: Path to the SQLite database file. Defaults to /data/cq.db. """ @@ -86,7 +85,7 @@ def _ensure_schema(self) -> None: ensure_review_columns(self._conn) ensure_users_table(self._conn) semsearch.ensure_schema(self._conn) - + ensure_api_keys_table(self._conn) def _check_open(self) -> None: