From 6106f7794ce5bd5ff0bec8c6a941faf7d26f2609 Mon Sep 17 00:00:00 2001
From: nebula <miyamoto@brain.imi.i.u-tokyo.ac.jp>
Date: Tue, 26 Jul 2016 15:05:07 +0900
Subject: [PATCH] change rotate position (Trimming -> ConvertSCNtoTIF)

---
 ConvertSCNtoTIF.txt | 4 ++++
 Trimming.txt        | 3 ---
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/ConvertSCNtoTIF.txt b/ConvertSCNtoTIF.txt
index 46ad72d..353c043 100644
--- a/ConvertSCNtoTIF.txt
+++ b/ConvertSCNtoTIF.txt
@@ -10,6 +10,10 @@ for (i=0; i<filelist.length; i++) {
     split_filename = split(filelist[i], ".");
     if (split_filename[1] == "scn") {
         run("Bio-Formats Importer", "open=" + input_directory + filelist[i] + input_latter);
+
+	run("Rotate 90 Degrees Right");
+	run("Rotate 90 Degrees Right");
+
         run("Save", "save=" + input_directory + split_filename[0] + "_rough.tif");
         close();
     }
diff --git a/Trimming.txt b/Trimming.txt
index bf1b995..4f71a08 100644
--- a/Trimming.txt
+++ b/Trimming.txt
@@ -78,9 +78,6 @@ function trim_images(borders, filename){
         makeRectangle(left, top, width, height);
         run("Duplicate...", "duplicate");
 
-	run("Rotate 90 Degrees Right");
-	run("Rotate 90 Degrees Right");
-
         run("Save", "save=" + input_directory + filename + "-" + j + ".tif");
         close();
     }