CI #4121
nextstrain-botci.yaml
on: schedule
Matrix: pytest-cram
mypy
52s
pyright
16s
build-docs
/
build
1m 25s
check-docs
46s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
19s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-12-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-1f9bad5014ed731922e11591656e3bc56c5f1489830ebd18b5bf7a483e54e7b2, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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192 KB |
sha256:3d69138f77803b1664af9b89e43006df418c07c346bc7ddef40be505d4cb7174
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output-avian-flu
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108 KB |
sha256:a868b90e15ae48fbb8e9ae906dfc990ce3647a325de50c8a6e25de3d956ee892
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output-dengue
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435 KB |
sha256:d3c891258c149c9ed7f4e8364818799d3973fd991c0010f6e0fcf47a90da8691
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output-lassa
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369 KB |
sha256:9afe02296c26c9aa57edc6e0c83330661a70d9140faf98f90db06086547f5c5a
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output-measles
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3.9 MB |
sha256:cb81d3375fc884804d61b30aa1891646c04c4213ffd94b94ff714d39a8b10d02
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output-mpox
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22.4 MB |
sha256:2d674b201b58f3389d19acea73520f159680c40e355057fda8c69e6d6c400f7f
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output-mumps
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378 KB |
sha256:6f8448dba4507e5542a9b210ef50fb1d13874a20cd4b19b7e1dcfa2804b740b4
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output-ncov
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714 KB |
sha256:1887b189d32ce7ac2d87f4a44eea20cb25626f21079bbd11ee9596b0ab5a4f41
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output-oropouche
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588 KB |
sha256:ce1b2c25597c916d88b169acd6d1b55adbf3d5d021d00cd76082d3241efc3efc
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output-rabies
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5.3 MB |
sha256:cb92e98d267f60de6ffd21caa3a67121fbd00c6511e59fdef9f70c511d80d225
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output-rsv
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661 KB |
sha256:03d55b0192505dadf8bb67c05b4f594d835eba8caed250ee3438b26c359859e2
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output-seasonal-cov
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2.58 MB |
sha256:b4c029eb3624b85a1f5e2455722885fc20e4c190246425d6897142cd68673e5c
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output-seasonal-flu
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60.2 KB |
sha256:18d8d03ef7da5af5c29081a8316005959b545e48720d1636e20a22cb3923138b
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output-vcf-input-tutorial
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5.03 MB |
sha256:32b58c65b8abb4bc94dc10d6d630f72954c90bd9891ece2c75b1f2416e8f69ff
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output-wnv
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241 KB |
sha256:07c7992e8eebba73a017cbd7c7ea5b8aad9b0cb7e3a3bdd3d0694837927f2bc1
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output-yellow-fever
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2.12 MB |
sha256:e6dbae86d691b30248337ad24eff913f8404eeb51dd0495c9a4885ef80261526
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output-zika
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838 KB |
sha256:cbbc7ed51110c0010dfdd083a829f94ba6e01fbc928e1503a66184c8c5edc6bc
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