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Documenting an error that I ran into for the first time in the seasonal flu builds that has been reported to IQ-TREE in multiple issues:
- BUG: IQTree 2.1.12 fails to run on input with ERROR: Tree taxa and alignment sequence do not match (see above) Cibiv/IQ-TREE#175
- Taxon name error iqtree/iqtree2#11
- ERROR: Tree taxa and alignment sequence do not match Cibiv/IQ-TREE#196
- Another issue with ModelFinder: "ERROR: Alignment sequence XXX does not appear in the tree" iqtree/iqtree2#47
This seems to be a sporadic error and should be fixed in v2.2.0.3
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