diff --git a/main.nf b/main.nf index 9b038db..968e92e 100644 --- a/main.nf +++ b/main.nf @@ -775,7 +775,7 @@ process percolator { tuple mzml_id, file(id_file) from id_files_idx_feat output: - tuple mzml_id, file("${id_file.baseName}_perc.idXML"), val("MS:1001491") into (id_files_perc, id_files_perc_consID) + tuple mzml_id, file("${id_file.baseName}_perc.idXML"), val("MS:1001491") into (id_files_perc, id_files_perc_consID, id_files_perc_multiqc) file "*.log" when: @@ -854,7 +854,7 @@ process idpep { tuple mzml_id, file(id_file) from id_files_idx_ForIDPEP_FDR.mix(id_files_idx_ForIDPEP_noFDR) output: - tuple mzml_id, file("${id_file.baseName}_idpep.idXML"), val("q-value_score") into (id_files_idpep, id_files_idpep_consID) + tuple mzml_id, file("${id_file.baseName}_idpep.idXML"), val("q-value_score") into (id_files_idpep, id_files_idpep_consID, id_files_idpep_multiqc) file "*.log" when: @@ -1226,12 +1226,12 @@ process pmultiqc { input: file design from ch_expdesign_multiqc file 'mzMLs/*' from ch_plfq.multiqc_mzmls.collect() - file 'proteomicslfq/*' from ch_out_mzTab_multiqc.merge(ch_out_consensusXML_multiqc).merge(ch_out_msstats_multiqc) - file 'raw_ids/*' from ch_plfq.multiqc_ids.collect() + file 'proteomicslfq/*' from ch_out_mzTab_multiqc.merge(ch_out_consensusXML_multiqc).merge(ch_out_msstats_multiqc) + file 'raw_ids/*' from id_files_idpep_multiqc.mix(id_files_perc_multiqc)[1].view() output: file '*.html' into ch_multiqc_report - file '*.db' + file '*.db' script: """