Skip to content

sarge not finding htslib #1

@awohns

Description

@awohns

I've been trying to run vcf2sarge but sarge doesn't seem to be able to find htslib. I've installed htslib from here (and also tried downloading from github), installed it, added the path to the htslib directory to $LD_LIBRARY_PATH and $LIBRARY_PATH and run make clean and make HTSLIB=1. However, I continue to get the following error:

ERROR: HTSLib not installed on this system. Conversion of VCF to SARGE format requires that you have HTSLib installed and available in the LIBRARY_PATH and LD_LIBRARY_PATH environment variables. Then recompile SARGE with HTSLIB=1.

Thanks in advance

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions