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Release 9.9.2019
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‎imports/chebi_import.json

Lines changed: 50 additions & 38 deletions
Original file line numberDiff line numberDiff line change
@@ -1153,12 +1153,12 @@
11531153
}, {
11541154
"pred" : "http://purl.obolibrary.org/obo/chebi/formula",
11551155
"val" : "C10H14N2"
1156-
}, {
1157-
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
1158-
"val" : "chebi_ontology"
11591156
}, {
11601157
"pred" : "http://purl.obolibrary.org/obo/chebi/mass",
11611158
"val" : "162.23160"
1159+
}, {
1160+
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
1161+
"val" : "chebi_ontology"
11621162
}, {
11631163
"pred" : "http://purl.obolibrary.org/obo/chebi/charge",
11641164
"val" : "0"
@@ -3623,6 +3623,10 @@
36233623
"pred" : "hasExactSynonym",
36243624
"val" : "azanium",
36253625
"xrefs" : [ "IUPAC" ]
3626+
}, {
3627+
"pred" : "hasRelatedSynonym",
3628+
"val" : "ammonium ion",
3629+
"xrefs" : [ "PDBeChem" ]
36263630
}, {
36273631
"pred" : "hasRelatedSynonym",
36283632
"val" : "NH4(+)",
@@ -3631,10 +3635,6 @@
36313635
"pred" : "hasRelatedSynonym",
36323636
"val" : "NH4+",
36333637
"xrefs" : [ "KEGG_COMPOUND" ]
3634-
}, {
3635-
"pred" : "hasRelatedSynonym",
3636-
"val" : "AMMONIUM ION",
3637-
"xrefs" : [ "PDBeChem" ]
36383638
} ],
36393639
"basicPropertyValues" : [ {
36403640
"pred" : "http://purl.obolibrary.org/obo/chebi/mass",
@@ -9972,14 +9972,26 @@
99729972
"id" : "http://purl.obolibrary.org/obo/CHEBI_35274",
99739973
"meta" : {
99749974
"definition" : {
9975-
"val" : "Ammonium, NH4(+), and derivatives formed by substitution by univalent groups.",
9975+
"val" : "A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc).",
99769976
"xrefs" : [ ]
99779977
},
99789978
"subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ],
99799979
"synonyms" : [ {
9980+
"pred" : "hasRelatedSynonym",
9981+
"val" : "ammonium ion derivatives",
9982+
"xrefs" : [ "ChEBI" ]
9983+
}, {
99809984
"pred" : "hasRelatedSynonym",
99819985
"val" : "azanium ions",
99829986
"xrefs" : [ "ChEBI" ]
9987+
}, {
9988+
"pred" : "hasRelatedSynonym",
9989+
"val" : "azanium ion derivatives",
9990+
"xrefs" : [ "ChEBI" ]
9991+
}, {
9992+
"pred" : "hasRelatedSynonym",
9993+
"val" : "azanium ion derivative",
9994+
"xrefs" : [ "ChEBI" ]
99839995
}, {
99849996
"pred" : "hasRelatedSynonym",
99859997
"val" : "ammonium ions",
@@ -9991,7 +10003,7 @@
999110003
} ]
999210004
},
999310005
"type" : "CLASS",
9994-
"lbl" : "ammonium ion"
10006+
"lbl" : "ammonium ion derivative"
999510007
}, {
999610008
"id" : "http://purl.obolibrary.org/obo/CHEBI_37332",
999710009
"meta" : {
@@ -11367,6 +11379,10 @@
1136711379
"sub" : "http://purl.obolibrary.org/obo/CHEBI_52092",
1136811380
"pred" : "is_a",
1136911381
"obj" : "http://purl.obolibrary.org/obo/CHEBI_25696"
11382+
}, {
11383+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_35274",
11384+
"pred" : "http://purl.obolibrary.org/obo/chebi#has_parent_hydride",
11385+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_28938"
1137011386
}, {
1137111387
"sub" : "http://purl.obolibrary.org/obo/CHEBI_76969",
1137211388
"pred" : "is_a",
@@ -11391,14 +11407,14 @@
1139111407
"sub" : "http://purl.obolibrary.org/obo/CHEBI_58097",
1139211408
"pred" : "is_a",
1139311409
"obj" : "http://purl.obolibrary.org/obo/CHEBI_25697"
11394-
}, {
11395-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_24532",
11396-
"pred" : "is_a",
11397-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_5686"
1139811410
}, {
1139911411
"sub" : "http://purl.obolibrary.org/obo/CHEBI_29337",
1140011412
"pred" : "http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of",
1140111413
"obj" : "http://purl.obolibrary.org/obo/CHEBI_29340"
11414+
}, {
11415+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_24532",
11416+
"pred" : "is_a",
11417+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_5686"
1140211418
}, {
1140311419
"sub" : "http://purl.obolibrary.org/obo/CHEBI_48218",
1140411420
"pred" : "is_a",
@@ -11559,14 +11575,14 @@
1155911575
"sub" : "http://purl.obolibrary.org/obo/CHEBI_35649",
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"pred" : "is_a",
1156111577
"obj" : "http://purl.obolibrary.org/obo/CHEBI_25418"
11562-
}, {
11563-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_37332",
11564-
"pred" : "is_a",
11565-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_22315"
1156611578
}, {
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"sub" : "http://purl.obolibrary.org/obo/CHEBI_50047",
1156811580
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
1156911581
"obj" : "http://purl.obolibrary.org/obo/CHEBI_39142"
11582+
}, {
11583+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_37332",
11584+
"pred" : "is_a",
11585+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_22315"
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}, {
1157111587
"sub" : "http://purl.obolibrary.org/obo/CHEBI_16134",
1157211588
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
@@ -12019,14 +12035,14 @@
1201912035
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33893",
1202012036
"pred" : "is_a",
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"obj" : "http://purl.obolibrary.org/obo/CHEBI_33232"
12022-
}, {
12023-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_50047",
12024-
"pred" : "is_a",
12025-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_35352"
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}, {
1202712039
"sub" : "http://purl.obolibrary.org/obo/CHEBI_18723",
1202812040
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
1202912041
"obj" : "http://purl.obolibrary.org/obo/CHEBI_50905"
12042+
}, {
12043+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_50047",
12044+
"pred" : "is_a",
12045+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_35352"
1203012046
}, {
1203112047
"sub" : "http://purl.obolibrary.org/obo/CHEBI_38106",
1203212048
"pred" : "is_a",
@@ -12223,14 +12239,14 @@
1222312239
"sub" : "http://purl.obolibrary.org/obo/CHEBI_36962",
1222412240
"pred" : "is_a",
1222512241
"obj" : "http://purl.obolibrary.org/obo/CHEBI_33304"
12226-
}, {
12227-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33560",
12228-
"pred" : "is_a",
12229-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_33318"
1223012242
}, {
1223112243
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33859",
1223212244
"pred" : "is_a",
1223312245
"obj" : "http://purl.obolibrary.org/obo/CHEBI_33659"
12246+
}, {
12247+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33560",
12248+
"pred" : "is_a",
12249+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_33318"
1223412250
}, {
1223512251
"sub" : "http://purl.obolibrary.org/obo/CHEBI_18723",
1223612252
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
@@ -12419,10 +12435,6 @@
1241912435
"sub" : "http://purl.obolibrary.org/obo/CHEBI_35649",
1242012436
"pred" : "is_a",
1242112437
"obj" : "http://purl.obolibrary.org/obo/CHEBI_38515"
12422-
}, {
12423-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_28938",
12424-
"pred" : "is_a",
12425-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_35274"
1242612438
}, {
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"sub" : "http://purl.obolibrary.org/obo/CHEBI_38295",
1242812440
"pred" : "is_a",
@@ -13007,14 +13019,14 @@
1300713019
"sub" : "http://purl.obolibrary.org/obo/CHEBI_17688",
1300813020
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
1300913021
"obj" : "http://purl.obolibrary.org/obo/CHEBI_59163"
13010-
}, {
13011-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_60056",
13012-
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
13013-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_77746"
1301413022
}, {
1301513023
"sub" : "http://purl.obolibrary.org/obo/CHEBI_59806",
1301613024
"pred" : "http://purl.obolibrary.org/obo/chebi#is_enantiomer_of",
1301713025
"obj" : "http://purl.obolibrary.org/obo/CHEBI_79008"
13026+
}, {
13027+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_60056",
13028+
"pred" : "http://purl.obolibrary.org/obo/RO_0000087",
13029+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_77746"
1301813030
}, {
1301913031
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33285",
1302013032
"pred" : "is_a",
@@ -13071,14 +13083,14 @@
1307113083
"sub" : "http://purl.obolibrary.org/obo/CHEBI_46775",
1307213084
"pred" : "is_a",
1307313085
"obj" : "http://purl.obolibrary.org/obo/CHEBI_50996"
13074-
}, {
13075-
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33702",
13076-
"pred" : "is_a",
13077-
"obj" : "http://purl.obolibrary.org/obo/CHEBI_36916"
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}, {
1307913087
"sub" : "http://purl.obolibrary.org/obo/CHEBI_25805",
1308013088
"pred" : "is_a",
1308113089
"obj" : "http://purl.obolibrary.org/obo/CHEBI_25585"
13090+
}, {
13091+
"sub" : "http://purl.obolibrary.org/obo/CHEBI_33702",
13092+
"pred" : "is_a",
13093+
"obj" : "http://purl.obolibrary.org/obo/CHEBI_36916"
1308213094
}, {
1308313095
"sub" : "http://purl.obolibrary.org/obo/CHEBI_52090",
1308413096
"pred" : "is_a",
@@ -13173,7 +13185,7 @@
1317313185
"subsets" : [ ],
1317413186
"xrefs" : [ ],
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"basicPropertyValues" : [ ],
13176-
"version" : "http://purl.obolibrary.org/obo/nbo/releases/2019-08-05/imports/chebi_import.owl"
13188+
"version" : "http://purl.obolibrary.org/obo/nbo/releases/2019-09-09/imports/chebi_import.owl"
1317713189
},
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"equivalentNodesSets" : [ ],
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"logicalDefinitionAxioms" : [ ],

‎imports/chebi_import.obo

Lines changed: 12 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
format-version: 1.2
2-
data-version: nbo/releases/2019-08-05/imports/chebi_import.owl
2+
data-version: nbo/releases/2019-09-09/imports/chebi_import.owl
33
ontology: nbo/imports/chebi_import
44

55
[Term]
@@ -1563,7 +1563,7 @@ subset: 3_STAR
15631563
synonym: "[NH4](+)" RELATED [MolBase]
15641564
synonym: "ammonium" EXACT IUPAC_NAME [IUPAC]
15651565
synonym: "ammonium" EXACT [ChEBI]
1566-
synonym: "AMMONIUM ION" RELATED [PDBeChem]
1566+
synonym: "ammonium ion" RELATED [PDBeChem]
15671567
synonym: "Ammonium(1+)" RELATED [ChemIDplus]
15681568
synonym: "azanium" EXACT IUPAC_NAME [IUPAC]
15691569
synonym: "NH4(+)" RELATED [UniProt]
@@ -1596,7 +1596,6 @@ xref: PMID:22631217 "Europe PMC"
15961596
xref: Reaxys:16093784 "Reaxys"
15971597
xref: Wikipedia:Ammonium
15981598
is_a: CHEBI:35106 ! nitrogen hydride
1599-
is_a: CHEBI:35274 ! ammonium ion
16001599
is_a: CHEBI:50313 ! onium cation
16011600
is_a: CHEBI:60242 ! monovalent inorganic cation
16021601
relationship: has_role CHEBI:23357 ! cofactor
@@ -2468,14 +2467,18 @@ is_a: CHEBI:24432 ! biological role
24682467

24692468
[Term]
24702469
id: CHEBI:35274
2471-
name: ammonium ion
2470+
name: ammonium ion derivative
24722471
namespace: chebi_ontology
2473-
def: "Ammonium, NH4(+), and derivatives formed by substitution by univalent groups." []
2472+
def: "A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc)." []
24742473
subset: 3_STAR
2474+
synonym: "ammonium ion derivatives" RELATED [ChEBI]
24752475
synonym: "ammonium ions" RELATED [ChEBI]
2476+
synonym: "azanium ion derivative" RELATED [ChEBI]
2477+
synonym: "azanium ion derivatives" RELATED [ChEBI]
24762478
synonym: "azanium ions" RELATED [ChEBI]
24772479
is_a: CHEBI:33702 ! polyatomic cation
24782480
is_a: CHEBI:51143 ! nitrogen molecular entity
2481+
relationship: has_parent_hydride CHEBI:28938 ! ammonium
24792482

24802483
[Term]
24812484
id: CHEBI:35337
@@ -3888,7 +3891,7 @@ synonym: "17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-17-ium-3,6alpha-diol"
38883891
synonym: "morphine" RELATED [UniProt]
38893892
synonym: "morphine cation" RELATED [ChEBI]
38903893
is_a: CHEBI:25697 ! organic cation
3891-
is_a: CHEBI:35274 ! ammonium ion
3894+
is_a: CHEBI:35274 ! ammonium ion derivative
38923895
relationship: is_conjugate_acid_of CHEBI:17303 ! morphine
38933896
property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string
38943897
property_value: http://purl.obolibrary.org/obo/chebi/formula "C17H20NO3" xsd:string
@@ -3930,7 +3933,7 @@ synonym: "(S)-nicotine" RELATED [UniProt]
39303933
synonym: "(S)-nicotinium cation" RELATED [ChEBI]
39313934
xref: Gmelin:329042 "Gmelin"
39323935
xref: MetaCyc:NICOTINE
3933-
is_a: CHEBI:35274 ! ammonium ion
3936+
is_a: CHEBI:35274 ! ammonium ion derivative
39343937
relationship: has_role CHEBI:76924 ! plant metabolite
39353938
relationship: is_conjugate_acid_of CHEBI:17688 ! (S)-nicotine
39363939
relationship: is_enantiomer_of CHEBI:79008 ! (R)-nicotinium(1+)
@@ -3971,7 +3974,7 @@ synonym: "cocaine" RELATED [UniProt]
39713974
synonym: "cocaine cation" RELATED [ChEBI]
39723975
xref: Gmelin:2542129 "Gmelin"
39733976
xref: Gmelin:341636 "Gmelin"
3974-
is_a: CHEBI:35274 ! ammonium ion
3977+
is_a: CHEBI:35274 ! ammonium ion derivative
39753978
is_a: CHEBI:37332 ! tropane alkaloid
39763979
relationship: has_role CHEBI:77746 ! human metabolite
39773980
relationship: is_conjugate_acid_of CHEBI:27958 ! cocaine
@@ -4402,7 +4405,7 @@ synonym: "(2R)-1-methyl-2-(pyridin-3-yl)pyrrolidinium" EXACT IUPAC_NAME [IUPAC]
44024405
synonym: "(R)-nicotine" RELATED [UniProt]
44034406
xref: MetaCyc:R-NICOTINE "SUBMITTER"
44044407
is_a: CHEBI:25697 ! organic cation
4405-
is_a: CHEBI:35274 ! ammonium ion
4408+
is_a: CHEBI:35274 ! ammonium ion derivative
44064409
relationship: is_conjugate_acid_of CHEBI:39162 ! (R)-nicotine
44074410
relationship: is_enantiomer_of CHEBI:59806 ! (S)-nicotinium(1+)
44084411
property_value: http://purl.obolibrary.org/obo/chebi/charge "+1" xsd:string

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