Using analysis tools in Jupyter Notebook

[BenATemple]

Hello,
I'm trying to use the analysis tools to load my OpenEphys data in Jupyter notebook, but am not having any success. Has anyone done this and could guide me through?
Ben

[jsiegle]

Hi Ben – which format did you use to save your data? I can put together a small notebook that shows how to load it.

[BenATemple]

Thanks, Josh! Much appreciated. I saved to binary

[jsiegle]

I made an example notebook here: https://github.com/open-ephys/analysis-tools/blob/master/Python3/Binary_data_loading_example.ipynb

Let me know if this has what you were looking for! The Binary.py actually only load the continuous data, so I also showed how to load spike times with standard numpy functions.

Just so you're aware, we are working on consolidating Open Ephys-related Python code in a separate repository: https://github.com/open-ephys/open-ephys-python-tools

It's not quite ready for widespread release, but you may already find it to be more useful than what's in the analysis-tools repo.

[BenATemple]

Josh, sorry for the slow reply -- I tried this and it worked well. Many thanks!

I tried the other Python code you link to before I posted my original message, but ran into problems here and there. I'll try again at some point soon.