diff --git a/.github/workflows/pull-request-merge.yml b/.github/workflows/pull-request-merge.yml index 58924c5e5..5f3f038ea 100644 --- a/.github/workflows/pull-request-merge.yml +++ b/.github/workflows/pull-request-merge.yml @@ -14,4 +14,4 @@ jobs: uses: opencb/cellbase/.github/workflows/reusable-delete-docker.yml@develop with: task: ${{ github.head_ref }} - secrets: inherit \ No newline at end of file + secrets: inherit diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index f38d8c729..d7f437923 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -36,4 +36,4 @@ jobs: release: uses: opencb/java-common-libs/.github/workflows/release-github-workflow.yml@develop - needs: [deploy-maven, deploy-docker, deploy-python] + needs: [deploy-maven, deploy-zetta-docker, deploy-python] diff --git a/cellbase-app/pom.xml b/cellbase-app/pom.xml index 9d8ce41f4..75d822002 100644 --- a/cellbase-app/pom.xml +++ b/cellbase-app/pom.xml @@ -12,6 +12,7 @@ cellbase-app jar + OpenCB CellBase Application ${project.basedir}/../build diff --git a/cellbase-client/pom.xml b/cellbase-client/pom.xml index 907285d84..57b715ae5 100644 --- a/cellbase-client/pom.xml +++ b/cellbase-client/pom.xml @@ -12,6 +12,7 @@ cellbase-client jar + OpenCB CellBase Client diff --git a/cellbase-core/pom.xml b/cellbase-core/pom.xml index b9d296556..7b19e6080 100644 --- a/cellbase-core/pom.xml +++ b/cellbase-core/pom.xml @@ -12,6 +12,7 @@ cellbase-core jar + OpenCB CellBase Core diff --git a/cellbase-lib/pom.xml b/cellbase-lib/pom.xml index eded12351..dc84518f9 100644 --- a/cellbase-lib/pom.xml +++ b/cellbase-lib/pom.xml @@ -12,6 +12,7 @@ cellbase-lib jar + OpenCB CellBase Library diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java index 9f4aebb61..4e7bbecad 100644 --- a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java +++ b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java @@ -19,7 +19,6 @@ import org.opencb.biodata.formats.io.FileFormatException; import org.opencb.biodata.formats.variant.cosmic.CosmicParser; import org.opencb.cellbase.core.exception.CellBaseException; - import org.opencb.cellbase.lib.EtlCommons; import org.rocksdb.RocksDB; import org.rocksdb.RocksDBException; diff --git a/cellbase-server/pom.xml b/cellbase-server/pom.xml index 52ace081c..31470e587 100644 --- a/cellbase-server/pom.xml +++ b/cellbase-server/pom.xml @@ -12,6 +12,7 @@ cellbase-server war + OpenCB CellBase Server diff --git a/pom.xml b/pom.xml index 6464ff001..d35fea896 100644 --- a/pom.xml +++ b/pom.xml @@ -40,7 +40,8 @@ 1.6.5 3.1.0 4.1.2 - 4.11.4 + 4.11.5 + 4.12 1.13 2.3.3 @@ -108,7 +109,7 @@ ossrh - https://oss.sonatype.org/content/repositories/snapshots + https://central.sonatype.com/repository/maven-snapshots/ true daily @@ -650,30 +651,57 @@ deploy-maven + ossrh - https://oss.sonatype.org/service/local/staging/deploy/maven2/ + OSSRH Staging API Releases + https://ossrh-staging-api.central.sonatype.com/service/local/staging/deploy/maven2/ + + ossrh - https://oss.sonatype.org/content/repositories/snapshots + Central Portal Snapshots + https://central.sonatype.com/repository/maven-snapshots/ + + + org.sonatype.central + central-publishing-maven-plugin + 0.8.0 + + true + + + ossrh + + true + + published + + true + + + org.apache.maven.plugins maven-source-plugin - 3.2.0 + 3.2.1 attach-sources + jar-no-fork + + org.apache.maven.plugins maven-javadoc-plugin @@ -682,14 +710,20 @@ attach-javadocs + jar + none + + false + + org.apache.maven.plugins maven-gpg-plugin @@ -697,12 +731,13 @@ sign-artifacts - deploy + + verify sign - + --pinentry-mode loopback @@ -711,17 +746,6 @@ - - org.sonatype.plugins - nexus-staging-maven-plugin - 1.6.8 - true - - ossrh - https://oss.sonatype.org/ - true - -