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TASK-7883 - Modify OpenCGA - CellBase dependency #735

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Merged
juanfeSanahuja merged 1 commit into from
Sep 3, 2025
Merged

TASK-7883 - Modify OpenCGA - CellBase dependency #735

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33 changes: 1 addition & 32 deletions .github/workflows/pull-request-approved.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,37 +6,6 @@ on:
types: [ submitted ]

jobs:
calculate-xetabase-branch:
if: github.event.review.state == 'approved'
name: Calculate Xetabase branch
runs-on: ubuntu-22.04
outputs:
xetabase_branch: ${{ steps.get_xetabase_branch.outputs.xetabase_branch }}
steps:
- name: Clone java-common-libs
uses: actions/checkout@v4
with:
fetch-depth: '10'
## This is important to avoid the error in the next step: "fatal: repository 'https://github.com/zetta-genomics/opencga-enterprise.git/' not found"
persist-credentials: false
- id: get_xetabase_branch
name: "Get current branch for Xetabase from target branch"
run: |
chmod +x ./.github/workflows/scripts/get-xetabase-branch.sh
echo "github.event.pull_request.base.ref: ${{ github.event.pull_request.base.ref }}"
echo "github.event.pull_request.head.ref: ${{ github.event.pull_request.head.ref }}"
xetabase_branch=$(./.github/workflows/scripts/get-xetabase-branch.sh ${{ github.event.pull_request.base.ref }})
echo "__Xetabase ref:__ \"${xetabase_branch}\"" | tee -a ${GITHUB_STEP_SUMMARY}
echo "xetabase_branch=${xetabase_branch}" >> $GITHUB_OUTPUT
env:
ZETTA_REPO_ACCESS_TOKEN: ${{ secrets.ZETTA_REPO_ACCESS_TOKEN }}

test:
if: github.event.review.state == 'approved'
name: "Run all tests before merging"
needs: calculate-xetabase-branch
uses: opencb/java-common-libs/.github/workflows/test-xetabase-workflow.yml@develop
with:
branch: ${{ needs.calculate-xetabase-branch.outputs.xetabase_branch }}
task: ${{ github.event.pull_request.head.ref }}
uses: ./.github/workflows/test-analysis.yml
secrets: inherit
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