Fix GitHub work flow #618

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Merged

zaucker merged 35 commits into oposs:main from zaucker:FixGitHubWorkFlow

Nov 27, 2025

.github/workflows/backend-and-models.yml

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -14,8 +14,9 @@ jobs:
  
          matrix:

            os:

              - ubuntu-22.04

              - ubuntu-24.04

            raku-version:

              - '2025.01'

              - '2025.11'

        runs-on: ${{ matrix.os }}

        services:

    @@ -26,21 +27,63 @@ jobs:
  
              POSTGRES_PASSWORD: postgres

              POSTGRES_DB: agrammon_test

            ports:

              - 5432:5432

              - 55432:5432

            options:

              --health-cmd pg_isready

              --health-interval 10s

              --health-timeout 5s

              --health-retries 5

        steps:

          - name: Install LaTeX

          # Checkout repository first as we need dev/pgpass for PostgreSQL access

          - name: Checkout repo

            uses: actions/checkout@v2

          - name: Load test database

            env:

              POSTGRES_USER: postgres

              POSTGRES_PASSWORD: postgres

              PGPASSFILE: ./dev/pgpass

              POSTGRES_DB: postgres

              AGRAMMON_DB: agrammon_test

              AGRAMMON_OWNER: agrammon

              AGRAMMON_GROUP: agrammon_user

              AGRAMMON_SCHEMA: ./t/test-data/agrammon.schema.sql

              AGRAMMON_TEST_DATA: ./t/test-data/agrammon.test.sql

            run: |

              chmod 0600 $PGPASSFILE

              psql -U $POSTGRES_USER  -h localhost --port 55432 -c "CREATE USER $AGRAMMON_OWNER PASSWORD 'agrammon'"    > /dev/null

              psql -U $POSTGRES_USER  -h localhost --port 55432 -c "CREATE GROUP $AGRAMMON_GROUP USER $AGRAMMON_OWNER"  > /dev/null

              psql -U $POSTGRES_USER  -h localhost --port 55432 -c "ALTER DATABASE $AGRAMMON_DB OWNER TO $AGRAMMON_OWNER" > /dev/null

              psql -U $AGRAMMON_OWNER -h localhost --port 55432 --file=$AGRAMMON_SCHEMA $AGRAMMON_DB                    > /dev/null

              psql -U $AGRAMMON_OWNER -h localhost --port 55432 --file=$AGRAMMON_TEST_DATA $AGRAMMON_DB                 > /dev/null

          - name: Setup apt cache

            uses: actions/cache@v4

            id: aptCache

            with:

              path: |

                /var/cache/apt/archives

                /var/lib/apt/lists

              key: ${{ matrix.os }}-apt-${{ hashFiles('.github/workflows/backend-and-models.yml') }}

          - name: Install system dependencies

            run: |

              sudo apt update

              sudo apt-get install texlive texlive-luatex texlive-latex-recommended texlive-latex-extra texlive-science

              sudo apt-get install -y libperl-dev texlive texlive-luatex texlive-latex-recommended texlive-science texlive-latex-extra

          - name: Checkout repo

            uses: actions/checkout@v2

          - name: Setup Perl modules cache

            uses: actions/cache@v4

            id: perlCache

            with:

              path: Inline/perl5

              key: ${{ matrix.os }}-perl-${{ hashFiles('**/cpanfile', '**/cpanfile.snapshot') }}-excel-writer-xlsx-v1

          - name: Install Perl modules

            if: steps.perlCache.outputs.cache-hit != 'true'

            run: |

              sudo apt-get install -y cpanminus

              cpanm --notest --local-lib=Inline/perl5 Excel::Writer::XLSX

          - name: Setup raku

            uses: Raku/setup-raku@v1

    @@ -52,7 +95,7 @@ jobs:
  
            id: rakuCache

            with:

              path: .raku

              key: ${{ runner.os }}-${{ matrix.raku-version }}-${{ hashFiles('./dev/META6.json') }}

              key: ${{ matrix.os }}-${{ matrix.raku-version }}-${{ hashFiles('./dev/META6.json') }}

          - name: Install Raku modules

            if: steps.rakuCache.outputs.cache-hit != 'true'

    @@ -65,6 +108,7 @@ jobs:
  
              find  t/test-data/Models/hr-inclNOx* -type f -print0 | sort -z | xargs -0 shasum > ./MODEL_MD5

              cat ./MODEL_MD5

              mkdir -p $HOME/.agrammon

              touch $HOME/.agrammon/.gitkeep

          - name: Setup model cache

            uses: actions/cache@v4

    @@ -73,21 +117,7 @@ jobs:
  
              path: $HOME/.agrammon

              key: AgrammonModels-${{ hashFiles('./MODEL_MD5') }}

          - name: Load test database

            env:

              POSTGRES_USER: postgres

              POSTGRES_PASSWORD: postgres

              POSTGRES_DB: agrammon_test

              PGPASSFILE: ./dev/pgpass

              AGRAMMON_DUMP: ./t/test-data/agrammon_test.dump.sql

            run: |

              chmod 0600 $PGPASSFILE

              psql -U postgres -h localhost -c "CREATE USER agrammon PASSWORD 'agrammonATwork'" > /dev/null

              psql -U postgres -h localhost -c "CREATE GROUP agrammon_user USER agrammon"       > /dev/null

              psql -U postgres -h localhost -c "GRANT ALL ON SCHEMA public TO agrammon_user"    > /dev/null

              psql -U postgres -h localhost -c "CREATE EXTENSION pgcrypto" agrammon_test        > /dev/null

              psql -U postgres -h localhost --file=$AGRAMMON_DUMP $POSTGRES_DB                  > /dev/null

          - name: Run backend tests

            run: |

              RAKULIB=inst#$GITHUB_WORKSPACE/.raku $GITHUB_WORKSPACE/.raku/bin/prove6 -l -v t

              PERL5LIB=Inline/perl5/lib/perl5 RAKULIB=inst#$GITHUB_WORKSPACE/.raku $GITHUB_WORKSPACE/.raku/bin/prove6 -l -v t

              # PERL5LIB=Inline/perl5/lib/perl5 RAKULIB=inst#$GITHUB_WORKSPACE/.raku $GITHUB_WORKSPACE/.raku/bin/prove6 -l -v t/datasource-db.rakutest

dev/pgpass

Original file line number	Diff line number	Diff line change
		@@ -1 +1,2 @@
		::*:agrammon:agrammon
		::*:postgres:postgres

t/datasource-db.rakutest

            
                      Original file line number
                      Diff line number
                      Diff line change
                  
    @@ -208,7 +208,7 @@ transactionally {
  
    sub prepare-test-db-single-data($user, $dataset, %variant) {

        my $db = $*AGRAMMON-DB-HANDLE;

        prepare-test-db-schema($db, $user);

    #     prepare-test-db-schema($db);

        my $userId = $db.query(q:to/STATEMENT/, $user).value;

        SELECT pers_email2id($1)

    @@ -239,7 +239,7 @@ sub prepare-test-db-single-data($user, $dataset, %variant) {
  
    sub prepare-test-db-flattened-data($user, $dataset, %variant) {

        my $db = $*AGRAMMON-DB-HANDLE;

        prepare-test-db-schema($db, $user);

    #     prepare-test-db-schema($db);

        my $userId = $db.query(q:to/STATEMENT/, $user).value;

        SELECT pers_email2id($1)

    @@ -284,7 +284,7 @@ sub prepare-test-db-flattened-data($user, $dataset, %variant) {
  
    sub prepare-test-db-branched-data($user, $dataset, %variant) {

        my $db = $*AGRAMMON-DB-HANDLE;

        prepare-test-db-schema($db, $user);

    #     prepare-test-db-schema($db);

        my $userId = $db.query(q:to/STATEMENT/, $user).value;

        SELECT pers_email2id($1)

    @@ -333,7 +333,7 @@ sub prepare-test-db-branched-data($user, $dataset, %variant) {
  
        $sth-data.execute($datasetId, 'Instance B', 'Test::Base[]::AnotherSubA::simple', 101);

    }

    sub prepare-test-db-schema($db, $user) {

    sub prepare-test-db-schema($db) {

        $db.query(q:to/STATEMENT/);

        CREATE TABLE IF NOT EXISTS pers (

            pers_id       SERIAL NOT NULL PRIMARY KEY,             -- Unique ID

    @@ -384,11 +384,6 @@ sub prepare-test-db-schema($db, $user) {
  
        CREATE OR REPLACE FUNCTION dataset_name2id(USERNAME text, NAME text) returns int4

           AS 'SELECT dataset_id FROM dataset WHERE dataset_name = $2 AND dataset_pers = pers_email2id($1)' STABLE LANGUAGE 'sql'

        STATEMENT

        $db.query(q:to/STATEMENT/, $user);

        INSERT INTO pers (pers_email, pers_first, pers_last, pers_password)

             VALUES ($1, 'X', 'X', 'X')

        STATEMENT

    }

    done-testing;

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