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    122 repositories

    • dnadotplot

      Public
      Bioinformatics tool for DNA Dot Plot [bioinformatics training]
      Rust
      •0•0•0•0•Updated May 25, 2025May 25, 2025

    • senior_bioinf_aptitude_test_0525

      Public
      Shell
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • NBI-Slurm

      Public
      Experimental interface to slurm
      perl
      Perl
      •0•2•0•0•Updated May 22, 2025May 22, 2025

    • .github

      Public
      0•0•0•0•Updated May 21, 2025May 21, 2025

    • datasciencegroup

      Public
      Scripts and docs from the datascienceatqib group
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated May 20, 2025May 20, 2025

    • climb-reloaded

      Public
      HTML
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • QuaTradis

      Public
      A pipeline to analyse transposon directed insertion-site sequencing
      Gnuplot
      •
      GNU General Public License v3.0
      •1•3•4•0•Updated May 14, 2025May 14, 2025

    • seqfu2-dev

      Public
      Nim
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2025May 9, 2025

    • readfx

      Public
      SeqFu FASTX parser (klib)
      Nim
      •
      MIT License
      •3•0•0•0•Updated May 9, 2025May 9, 2025

    • nim-abif

      Public
      parser for ABIF chromatograms for Nim projects
      Nim
      •
      MIT License
      •0•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • coffee-break-gpt

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •861•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • qipalette

      Public
      R
      •
      Other
      •0•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • quadram-institute-bioscience.github.io

      Public
      Core Bioinformatics public page
      SCSS
      •
      MIT License
      •848•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • notes

      Public
      Bioinformatics notes
      bioinformaticstutorialgenomicsmetagenomics
      JavaScript
      •
      MIT License
      •1.6k•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • mini-prep

      Public
      Nextflow
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • dadaist2

      Public
      Dadaist2 🟨 Highway to R
      bioinformaticstaxonomymetabarcoding16sphyloseqdada2asvamplicon-pipeline
      HTML
      •
      MIT License
      •5•13•2•0•Updated Mar 7, 2025Mar 7, 2025

    • dadaist1-docs

      Public
      Legacy docs for Dadaist2 1.x
      bioinformaticsbioinformatics-pipelinemicrobiomemetabarcoding16sits1
      0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • plotcov

      Public
      Plotting depth coverage of bam file with header tax_ID|accession_no
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 23, 2025Feb 23, 2025

    • sample-sheet-validator

      Public
      Svelte
      •
      MIT License
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • n50

      Public
      Calculate N50 from FASTA and FASTX files
      C
      •
      MIT License
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • best-practices

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • ARG-Sniper

      Public
      Benchmarking of AMR detection tools using shot-gun metagenomic datasets
      Python
      •
      Apache License 2.0
      •2•0•1•0•Updated Jan 29, 2025Jan 29, 2025

    • seqfu_v1

      Public
      Seqfu v1.x - Sequece Fastx Utilities
      Nim
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • irida-uploader-web

      Public
      A web service for uploading data to IRIDA
      Python
      •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

    • qimba

      Public
      Quadram Institute MetaBarcoding Analysis
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 17, 2025Jan 17, 2025

    • nf-dehost

      Public
      Removing human sequences from short read samples using bowtie2
      Python
      •1•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • cloudgene3

      Public
      A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
      Java
      •
      MIT License
      •5•0•0•0•Updated Dec 14, 2024Dec 14, 2024

    • cg-irida

      Public
      Cloudgene yaml for https://github.com/quadram-institute-bioscience/nf-irida
      0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • nf-irida

      Public
      Simple NF workflow for preparing sample sheet of data from IRIDA
      Python
      •1•0•0•0•Updated Dec 12, 2024Dec 12, 2024