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diff --git a/docs/acknowledgments.html b/docs/acknowledgments.html
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diff --git a/docs/browser_compat.html b/docs/browser_compat.html
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diff --git a/docs/codon_plot.html b/docs/codon_plot.html
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diff --git a/docs/codon_usage.html b/docs/codon_usage.html
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diff --git a/docs/color_align_cons.html b/docs/color_align_cons.html
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diff --git a/docs/color_align_prop.html b/docs/color_align_prop.html
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diff --git a/docs/combine_fasta.html b/docs/combine_fasta.html
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diff --git a/docs/cpg_islands.html b/docs/cpg_islands.html
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diff --git a/docs/dna_mw.html b/docs/dna_mw.html
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diff --git a/docs/embl_fasta.html b/docs/embl_fasta.html
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diff --git a/docs/embl_feat.html b/docs/embl_feat.html
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diff --git a/docs/embl_trans.html b/docs/embl_trans.html
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diff --git a/docs/filter_dna.html b/docs/filter_dna.html
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diff --git a/docs/fuzzy_search_dna.html b/docs/fuzzy_search_dna.html
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Genetic codes
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The Sequence Manipulation Suite
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IUPAC codes
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Download
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- |
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-
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-
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-
-
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- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
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-
-
-
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+
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+
+
+
+
+
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
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-
-
-
-
-
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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-
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-
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+ |
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- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
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-
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-
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-
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-
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-
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-
-
-
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- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
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index 5f95301..aebff7d 100644
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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-
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-
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-
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+ |
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- Stothard. Send questions and comments to stothard@ualberta.ca
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-
-
-
-
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diff --git a/docs/random_dna.html b/docs/random_dna.html
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- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
diff --git a/docs/random_protein.html b/docs/random_protein.html
index 24e1edb..e8f193f 100644
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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diff --git a/docs/random_protein_regions.html b/docs/random_protein_regions.html
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-
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diff --git a/docs/range_extract_dna.html b/docs/range_extract_dna.html
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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-
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diff --git a/docs/range_extract_protein.html b/docs/range_extract_protein.html
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type="text/javascript"
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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diff --git a/docs/reference.html b/docs/reference.html
index 2675fad..04fb79b 100644
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Reference
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
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+ |
diff --git a/docs/rest_digest.html b/docs/rest_digest.html
index e459679..320c764 100644
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- Stothard. Send questions and comments to stothard@ualberta.ca
-
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-
-
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diff --git a/docs/rest_map.html b/docs/rest_map.html
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-
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--- a/docs/rev_comp.html
+++ b/docs/rev_comp.html
@@ -7,6 +7,7 @@
+
@@ -15,341 +16,7 @@
- |
-
-
-
- Format Conversion
-
-
-
-
-
- Sequence Analysis
-
-
-
-
-
- Sequence Figures
-
-
-
-
-
- Random Sequences
-
-
-
-
-
- Miscellaneous
-
-
-
-
-
-
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
diff --git a/docs/rev_trans.html b/docs/rev_trans.html
index e77f6ef..07b6c22 100644
--- a/docs/rev_trans.html
+++ b/docs/rev_trans.html
@@ -7,6 +7,7 @@
+
@@ -15,341 +16,7 @@
- |
-
-
-
- Format Conversion
-
-
-
-
-
- Sequence Analysis
-
-
-
-
-
- Sequence Figures
-
-
-
-
-
- Random Sequences
-
-
-
-
-
- Miscellaneous
-
-
-
-
-
-
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
diff --git a/docs/sample_dna.html b/docs/sample_dna.html
index 329b3d3..8cfd31d 100644
--- a/docs/sample_dna.html
+++ b/docs/sample_dna.html
@@ -7,6 +7,7 @@
+
@@ -15,341 +16,7 @@
- |
-
-
-
- Format Conversion
-
-
-
-
-
- Sequence Analysis
-
-
-
-
-
- Sequence Figures
-
-
-
-
-
- Random Sequences
-
-
-
-
-
- Miscellaneous
-
-
-
-
-
-
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
diff --git a/docs/sample_protein.html b/docs/sample_protein.html
index 4c24f53..ed4dff3 100644
--- a/docs/sample_protein.html
+++ b/docs/sample_protein.html
@@ -7,6 +7,7 @@
+
@@ -15,341 +16,7 @@
- |
-
-
-
- Format Conversion
-
-
-
-
-
- Sequence Analysis
-
-
-
-
-
- Sequence Figures
-
-
-
-
-
- Random Sequences
-
-
-
-
-
- Miscellaneous
-
-
-
-
-
-
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
-
- |
+ |
diff --git a/docs/scripts/sidebar_loader.js b/docs/scripts/sidebar_loader.js
new file mode 100644
index 0000000..0c634b3
--- /dev/null
+++ b/docs/scripts/sidebar_loader.js
@@ -0,0 +1,40 @@
+// scripts/sidebar_loader.js
+
+// Function to load the sidebar/navigation dynamically
+function loadSidebar(navPath = 'nav.html', placeholderId = 'nav-placeholder') {
+ fetch(navPath)
+ .then(response => {
+ if (!response.ok) {
+ throw new Error(`HTTP error ${response.status}`);
+ }
+ return response.text();
+ })
+ .then(data => {
+ // Inject nav content
+ const navContainer = document.getElementById(placeholderId);
+ if (navContainer) {
+ navContainer.innerHTML = data;
+
+ // Highlight current page link
+ const currentPage = location.pathname.split('/').pop();
+ const links = navContainer.querySelectorAll('a');
+
+ links.forEach(link => {
+ const href = link.getAttribute('href');
+ if (href === currentPage) {
+ link.style.fontWeight = 'bold';
+ link.style.color = '#FF0000'; // Customize highlight color
+ }
+ });
+ } else {
+ console.error(`Element with id '${placeholderId}' not found.`);
+ }
+ })
+ .catch(error => {
+ console.error('Sidebar failed to load:', error);
+ });
+ }
+
+ // Immediately invoke when script loads
+ document.addEventListener('DOMContentLoaded', () => loadSidebar());
+
\ No newline at end of file
diff --git a/docs/search_patterns.html b/docs/search_patterns.html
index 23be0ff..c2b4857 100644
--- a/docs/search_patterns.html
+++ b/docs/search_patterns.html
@@ -5,6 +5,7 @@
Search patterns
+
@@ -13,341 +14,7 @@
- |
-
-
-
- Format Conversion
-
-
-
-
-
- Sequence Analysis
-
-
-
-
-
- Sequence Figures
-
-
-
-
-
- Random Sequences
-
-
-
-
-
- Miscellaneous
-
-
-
-
-
-
-
- The Sequence Manipulation Suite Copyright © 2000, 2004 Paul
- Stothard. Send questions and comments to stothard@ualberta.ca
-
-
-
-
- | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |