Hi,
I am currently tweaking protgps Predict so it works on our computers and hpc, and the version of PyTorch Lightning used (1.6.4) is causing issues with pip on our servers when installing dependencies. I tried replacing it with a more recent version (1.9.5) and the test runs return the same prediction values, so it seems to work fine. Just in case though, do you anticipate any issues by upgrading the Lightning version like this?
Thanks!