I am trying to use DUBStepR with Seurat v5, but errors ocur
Code:
res <- DUBStepR(input.data = Seu.data@assays$RNA@data,
min.cells = 0.05 * ncol(Seu.data),
species = "human",
optimise.features = TRUE,
k = 10,
num.pcs = 20,
error = 0)
Error:
Running DUBStepR...
Error in paste("Dimensions of input data:", dim(data)[[1]], "x", dim(data)[[2]]) :
no slot of name "data" for this object of class "Assay5"
I am trying to use DUBStepR with Seurat v5, but errors ocur
Code:
res <- DUBStepR(input.data = Seu.data@assays$RNA@data,
min.cells = 0.05 * ncol(Seu.data),
species = "human",
optimise.features = TRUE,
k = 10,
num.pcs = 20,
error = 0)
Error:
Running DUBStepR...
Error in paste("Dimensions of input data:", dim(data)[[1]], "x", dim(data)[[2]]) :
no slot of name "data" for this object of class "Assay5"