accuracy.md

Basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

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Accuracy

basenji_test.py

Compute accuracy statistics for a trained model on a held out test set.

Arguments	Type	Description
params_file	Text table	Model configuration parameters.
model file	TensorFlow Saver file	Trained Basenji model.
test_hdf5_file	HDF5	Output HDF5 file with test_in/test_out keys.

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basenji_test_genes.py

Compute accuracy statistics for a trained model at gene TSSs.

Arguments	Type	Description
params_file	Text table	Model configuration parameters.
model file	TensorFlow Saver file	Trained Basenji model.
genes_hdf5_file	HDF5	HDF5 file with gene sequences and descriptions.