example_settings.json

{
    "dataset": {"name": "MAYOpc",
                "filepath": "~/Data/AMP-AD/MAYO/mayo-pc.tsv",
                "meta_columns": ["ID", "PMI", "AOD", "Diagnosis", "Braak", 
                                 "Region", "Thal", "ApoE", "Gender", "Source", 
                                 "TDP-43", "LBD"],
                "target": "Braak",
                "ID_column": "ID",
                "confounder": "AOD",
                "transforms": [{"operation": "drop_cols",
                                "columns_list": ["PMI", "Diagnosis", 
                                                 "Thal", "ApoE", "Gender",
                                                 "Source", "TDP-43", "LBD"]},
                               {"operation": "dropna"},
                               {"operation": "filter",
                                "column": "Region",
                                "values": ["Temporal Cortex"],
                                "name": "Region_filter"},
                               {"operation": "filter",
                                "column": "Braak",
                                "values": [0, 1, 2, 5, 6],
                                "name": "AC"},
                               {"operation": "digitize",
                                "column": "Braak",
                                "thresholds": [0, 3, 5]}]},
    "processor": {"scheme": "LPOCV",
                  "pairs": {"seed": 47,
                            "steps": [{"operation": "shuffle"},
                                      {"operation": "contains_sample"},
                                      {"operation": "diff_target"},
                                      {"operation": "min_confounder"},
                                      {"operation": "unique_pair"},
                                      {"operation": "pick_one"}]},
                  "estimator": {"name": "sklearn.linear_model.LogisticRegression",
                                "params": {"random_state": 47}}
                  }
}