Primer design Java Runtime error

[kaneja123]

eesi@dhantha-CG1330:~/Desktop$ java -jar /home/eesi/RDPTools/PrimerDesign/dist/PrimerDesign.jar -subcommand select -input /home/eesi/Desktop/reduced.mfa -SlidingScale true -productLengthMin 150 -productLengthMax 500 -oligoMinSize 15 -oligoMaxSize 30 -maxMismatches 0 -tempMin 55 -tempMax 63 -hairMax 35 -homoMax 35 -isTreeWeightNeeded f -os mac -output outputfile -assayMax 30 -degenMax 1 -NoTEndFilter t -NoPoly3GCFilter t -PolyRunFilter 4 -GCFilterMin 0.45 -GCFilterMax 0.7 -sodiumConc 50.0 -magnesConc 1.5

A fatal error has been detected by the Java Runtime Environment:

SIGSEGV (0xb) at pc=0x00007fabba8b852f, pid=11535, tid=0x00007fabbb433700

JRE version: Java(TM) SE Runtime Environment (8.0_171-b11) (build 1.8.0_171-b11)

Java VM: Java HotSpot(TM) 64-Bit Server VM (25.171-b11 mixed mode linux-amd64 compressed oops)

Problematic frame:

C [libc.so.6+0x8252f]

Can you help us with this?

[rdpstaffmsu]

Which OS were you running this command string? Benli

…

On Wed, Jul 11, 2018 at 3:38 PM, kaneja123 ***@***.***> wrote: ***@***.***:~/Desktop$ java -jar /home/eesi/RDPTools/ PrimerDesign/dist/PrimerDesign.jar -subcommand select -input /home/eesi/Desktop/reduced.mfa -SlidingScale true -productLengthMin 150 -productLengthMax 500 -oligoMinSize 15 -oligoMaxSize 30 -maxMismatches 0 -tempMin 55 -tempMax 63 -hairMax 35 -homoMax 35 -isTreeWeightNeeded f -os mac -output outputfile -assayMax 30 -degenMax 1 -NoTEndFilter t -NoPoly3GCFilter t -PolyRunFilter 4 -GCFilterMin 0.45 -GCFilterMax 0.7 -sodiumConc 50.0 -magnesConc 1.5 A fatal error has been detected by the Java Runtime Environment: SIGSEGV (0xb) at pc=0x00007fabba8b852f, pid=11535, tid=0x00007fabbb433700 JRE version: Java(TM) SE Runtime Environment (8.0_171-b11) (build 1.8.0_171-b11) Java VM: Java HotSpot(TM) 64-Bit Server VM (25.171-b11 mixed mode linux-amd64 compressed oops) Problematic frame: C [libc.so.6+0x8252f] Can you help us with this? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_rdpstaff_EcoFunPrimer_issues_2&d=DwMCaQ&c=nE__W8dFE-shTxStwXtp0A&r=nW_NZUC032fdNUiUpmuS5Q&m=2vT254bQSQmJnRBTXcuqGjt3PpWmv0_exb4Ybtn9HRQ&s=NitxeTfHg4W6kHImOTi9M82LKDuqiWMyB-HutJpl5AE&e=>, or mute the thread <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_AKlEVlQ5v8coiAtfYOthq6c54rKlO-5F1Dks5uFlQ4gaJpZM4VLuZE&d=DwMCaQ&c=nE__W8dFE-shTxStwXtp0A&r=nW_NZUC032fdNUiUpmuS5Q&m=2vT254bQSQmJnRBTXcuqGjt3PpWmv0_exb4Ybtn9HRQ&s=i7-Eh-E56ksai7PrGt0GPGfb3AunQMVzUBPB1s3kgpU&e=> .

-- RDP Staff Ribosomal Database Project Center for Microbial Ecology Michigan State University 567 Wilson Rd. Room 2225 A East Lansing, MI 48824 (517) 353-3842