release-other-identifiers/pom.xml at develop · reactome/release-other-identifiers · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.reactome.release</groupId>
    <artifactId>other-identifiers</artifactId>
    <version>0.0.1</version>
    <packaging>jar</packaging>

    <name>other-identifiers</name>
    <description>
        Retrieval and insertion of external identifiers for Reactome reference gene products (proteins)
    </description>
    <url>https://reactome.org</url>
    <licenses>
        <license>
            <name>GNU AFFERO GENERAL PUBLIC LICENSE</name>
            <url>https://www.gnu.org/licenses/agpl-3.0.txt</url>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Justin Cook</name>
            <email>justin.cook@oicr.on.ca</email>
            <organization>Reactome</organization>
            <organizationUrl>https://reactome.org</organizationUrl>
        </developer>
    </developers>

    <scm>
        <connection>scm:git:git://github.com/reactome/release-other-identifiers.git</connection>
        <developerConnection>scm:git:ssh://github.com/reactome/release-other-identifiers.git</developerConnection>
        <url>https://github.com/reactome/release-other-identifiers</url>
        <tag>develop</tag>
    </scm>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    </properties>

    <dependencies>
        <!-- Main dependencies -->
        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-core</artifactId>
            <version>2.11.0</version>
        </dependency>
        <dependency>
            <groupId>org.reactome.release</groupId>
            <artifactId>release-common-lib</artifactId>
            <version>1.2.0</version>
        </dependency>

        <!-- Test dependencies -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <version>5.5.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest</artifactId>
            <version>2.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>2.21.0</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <!-- sets the Java compiler version targeted by Maven -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.8.1</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>

            <!--
            allows 'mvn clean compile assembly:single' command to create a jar with dependencies

            execution section also allows 'mvn clean package' command to create two jars - with/without dependencies
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>3.2.0</version>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>org.reactome.release.dataexport.Main</mainClass>
                        </manifest>
                    </archive>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
                        <phase>package</phase> <!-- bind to the packaging phase -->
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <!--
            allows 'mvn release' command to create a new release of the project
            https://maven.apache.org/maven-release/maven-release-plugin/
            -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-release-plugin</artifactId>
                <version>2.5.3</version>
                <configuration>
                    <autoVersionSubmodules>true</autoVersionSubmodules>
                    <useReleaseProfile>false</useReleaseProfile>
                    <releaseProfiles>release</releaseProfiles>
                    <goals>deploy</goals>
                    <tagNameFormat>v@{project.version}</tagNameFormat>
                </configuration>
            </plugin>

            <!--
                checks the POM file has the order specified by the POM Code Convention
                http://maven.apache.org/developers/conventions/code.html#POM_Code_Convention
            -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>tidy-maven-plugin</artifactId>
                <version>1.1.0</version>
                <executions>
                    <execution>
                        <id>validate</id>
                        <phase>validate</phase>
                        <goals>
                            <goal>check</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
</project>