Problem in cytoscape v3.9.1

[rahimi123]

Hello NeDRex team,

I have been using the NeDRexApp in Cytoscape successfully before, but recently the MuST algorithm no longer runs properly on my setup.

My environment:

Cytoscape version: 3.9.1

NeDRexApp version: 2.0.0 (latest from Cytoscape App Store)

OS: Windows 10 (64-bit)

Problem description:

When I run MuST on selected seeds, I get:

The computation is taking very long! It continues running in the backend,
to get the results please try again using the same parameters and input
for the algorithm in 15 mins!

Additionally, I often get this error in the log:

Exception executing task:
class java.lang.String cannot be cast to class org.cytoscape.view.vizmap.VisualStyle

Notes:

I tried clearing Cytoscape styles (CytoscapeConfiguration/styles) and re-running, but the issue persists.

I tested the same seed nodes and parameters that previously worked fine.

The web interface (https://nedrex.net) still works, so the server seems fine, but the Cytoscape app fails.

This looks like a combination of VisualStyle incompatibility with Cytoscape 3.9.1 and timeout handling in the plugin.

Request:

Could you please confirm if NeDRexApp is compatible with Cytoscape 3.9.1 (or newer, 3.10.x)?
If not, do you plan to release an updated version soon?
Also, is there a workaround for the MuST timeout issue?

Thank you for your support!