Python bindings segfault on OS X El Capitan

[SmithSamuelM]

I installed hyperdex with python using home-brew on OS X 10.11.1.

In python 2.7 installed with home-brew running

from hyperdex.admin import Admin

SegFaults

[SmithSamuelM]

Same thing happens for

from hyperdex.client import Client

Process: Python [9778]
Path: /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.10 (2.7.10)
Code Type: X86-64 (Native)
Parent Process: bash [58033]
Responsible: Terminal [3313]
User ID: 2020

Date/Time: 2015-12-04 12:05:26.929 -0700
OS Version: Mac OS X 10.11.1 (15B42)
Report Version: 11
Anonymous UUID: 42A8B9B0-E6D6-E87A-F91E-AED498E7CC9D

Sleep/Wake UUID: C247D090-2553-4645-94B8-DB94E8AB7E57

Time Awake Since Boot: 590000 seconds
Time Since Wake: 320000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008

VM Regions Near 0x8:
-->
__TEXT 0000000104ce0000-0000000104ce2000 [ 8K] r-x/rwx SM=COW /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 org.python.python 0x00000001053ec889 PyImport_AddModule + 24
1 client.so 0x000000010527c748 initclient + 348
2 org.python.python 0x0000000104d80327 PyImport_LoadDynamicModule + 140
3 org.python.python 0x0000000104d80003 import_submodule + 270
4 org.python.python 0x0000000104d7fbc6 load_next + 284
5 org.python.python 0x0000000104d7db93 PyImport_ImportModuleLevel + 507
6 org.python.python 0x0000000104d63641 builtin___import_ + 135
7 org.python.python 0x0000000104ceead7 PyObject_Call + 99
8 org.python.python 0x0000000104d6de2e PyEval_CallObjectWithKeywords + 93
9 org.python.python 0x0000000104d6a274 PyEval_EvalFrameEx + 8334
10 org.python.python 0x0000000104d67fb4 PyEval_EvalCodeEx + 1387
11 org.python.python 0x0000000104d67a43 PyEval_EvalCode + 54
12 org.python.python 0x0000000104d87816 run_mod + 53
13 org.python.python 0x0000000104d87632 PyRun_InteractiveOneFlags + 377
14 org.python.python 0x0000000104d8711e PyRun_InteractiveLoopFlags + 192
15 org.python.python 0x0000000104d86fc8 PyRun_AnyFileExFlags + 60
16 org.python.python 0x0000000104d98e09 Py_Main + 3057
17 libdyld.dylib 0x00007fff91d8d5ad start + 1

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000000 rcx: 0x0000000000000001 rdx: 0x0000000000000003
rdi: 0x00000001052cccb4 rsi: 0x0000000000000010 rbp: 0x00007fff5af1f1f0 rsp: 0x00007fff5af1f1d0
r8: 0x000000010550f030 r9: 0x0000000000000000 r10: 0x0000000000001002 r11: 0x00000000000ea279
r12: 0x0000000000000000 r13: 0x0000000000000001 r14: 0x00000001052cccb4 r15: 0x8d00cd6658daf867
rip: 0x00000001053ec889 rfl: 0x0000000000010206 cr2: 0x0000000000000008

Logical CPU: 4
Error Code: 0x00000004
Trap Number: 14

Binary Images:
0x104ce0000 - 0x104ce1fff +org.python.python (2.7.10 - 2.7.10) <45F60428-1330-3E97-942D-4B32CE803C41> /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
0x104ce4000 - 0x104dd5fff +org.python.python (2.7.10, [c] 2001-2015 Python Software Foundation. - 2.7.10) <5D0AE21E-77B6-345E-B3A2-4DD5429C2327> /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/Python
0x1051b7000 - 0x1051b9fff +_locale.so (0) <8C25BC60-39E5-3254-8186-909944B8174C> /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/_locale.so
0x1051fc000 - 0x1051feff7 +readline.so (0) /usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload/readline.so
0x105204000 - 0x105224ff7 +libreadline.6.dylib (0) /usr/local/opt/readline/lib/libreadline.6.dylib
0x10527b000 - 0x1052ccff7 +client.so (0) /usr/local/lib/python2.7/site-packages/hyperdex/client.so
0x1052e8000 - 0x105335ff7 +libhyperdex-client.0.dylib (0) <8C1DB4C2-261D-3492-941A-4F409D77A14E> /usr/local/Cellar/hyperdex/1.4.4/lib/libhyperdex-client.0.dylib
0x105355000 - 0x105446ff7 org.python.python (2.7.10 - 2.7.10) <5A7838D3-24D4-395B-BE96-ADD007C86E55> /System/Library/Frameworks/Python.framework/Versions/2.7/Python
0x1054ad000 - 0x1054c5ff7 +libreplicant.1.dylib (0) <156C2E58-7942-33E1-97FF-2C3E233A9DA6> /usr/local/opt/replicant/lib/libreplicant.1.dylib
0x1054d1000 - 0x1054e3ff7 +libbusybee.2.dylib (0) /usr/local/opt/busybee/lib/libbusybee.2.dylib
0x1054ec000 - 0x1054f2fff +libe.1.dylib (0) <8A40193B-AFCF-3D06-B9BD-05845C5A8669> /usr/local/opt/libe/lib/libe.1.dylib
0x1054f9000 - 0x1054fefff +libjson-c.2.dylib (0) /usr/local/opt/json-c/lib/libjson-c.2.dylib
0x105503000 - 0x10550afff +libpopt.0.dylib (0) /usr/local/opt/popt/lib/libpopt.0.dylib
0x7fff66fec000 - 0x7fff67022f5f dyld (360.17) <03673B53-B8B7-34D1-ADCE-F449E78E39CC> /usr/lib/dyld
0x7fff8782b000 - 0x7fff8787eff7 libc++.1.dylib (120.1) <54190E1B-EE49-3D6D-AC29-2813D7380BA5> /usr/lib/libc++.1.dylib
0x7fff8797e000 - 0x7fff8797eff7 liblaunch.dylib (755.1.19) <7EC0F297-43CC-3D11-B46B-7E72E372648A> /usr/lib/system/liblaunch.dylib
0x7fff882a2000 - 0x7fff882a6fff libcache.dylib (75) <4948E2C8-867F-3E9D-AAE7-2F30F0B345C6> /usr/lib/system/libcache.dylib
0x7fff882c1000 - 0x7fff882c2ffb libSystem.B.dylib (1225.1.1) <59F79CA0-5D86-359D-A235-4F257409109E> /usr/lib/libSystem.B.dylib
0x7fff882c3000 - 0x7fff886266d7 libobjc.A.dylib (680) <7C5FAD04-2C01-3ED6-AA40-78925C12A456> /usr/lib/libobjc.A.dylib
0x7fff8879b000 - 0x7fff8879dff7 libsystem_configuration.dylib (801.10.2) <93D5FB9A-CC7C-3672-80D8-7A1C4805204B> /usr/lib/system/libsystem_configuration.dylib
0x7fff891ea000 - 0x7fff891ebfff libDiagnosticMessagesClient.dylib (100) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff89757000 - 0x7fff89bccff7 com.apple.CoreFoundation (6.9 - 1255.1) <86B26482-C917-34F2-80D8-02911B6001E0> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff89ce1000 - 0x7fff89d0afff libxpc.dylib (755.1.19) <3E09C275-A33B-357A-B0AB-A2DDF88EC9D5> /usr/lib/system/libxpc.dylib
0x7fff8ae93000 - 0x7fff8aec4ff7 libncurses.5.4.dylib (46) <766F2188-F523-3FAA-AC1F-49447F09E133> /usr/lib/libncurses.5.4.dylib
0x7fff8c36f000 - 0x7fff8c378ff7 libsystem_pthread.dylib (137.1.1) <1373D0F1-C6CA-364E-A6BA-8BDBD0D34670> /usr/lib/system/libsystem_pthread.dylib
0x7fff8cd2a000 - 0x7fff8cf37fff libicucore.A.dylib (551.30) /usr/lib/libicucore.A.dylib
0x7fff8f34d000 - 0x7fff8f34efff libsystem_blocks.dylib (65) <1B4F1F10-823E-3781-8162-6884D14DF0D6> /usr/lib/system/libsystem_blocks.dylib
0x7fff8f4ae000 - 0x7fff8f4b0fff libsystem_coreservices.dylib (19) <692631A0-1923-32CA-9BD5-044B1382FFDE> /usr/lib/system/libsystem_coreservices.dylib
0x7fff9072e000 - 0x7fff90736fff libcopyfile.dylib (127) /usr/lib/system/libcopyfile.dylib
0x7fff90764000 - 0x7fff90780ff7 libsystem_malloc.dylib (67) <1B57A614-3D60-3F87-876F-7DB4AF38120F> /usr/lib/system/libsystem_malloc.dylib
0x7fff90b29000 - 0x7fff90b52fff libc++abi.dylib (125) /usr/lib/libc++abi.dylib
0x7fff90c94000 - 0x7fff90cdaff7 libauto.dylib (186) <460B0167-C89B-37EC-823C-52F684B31C26> /usr/lib/libauto.dylib
0x7fff90fd5000 - 0x7fff91062fe7 libsystem_c.dylib (1081.1.3) /usr/lib/system/libsystem_c.dylib
0x7fff91111000 - 0x7fff9113aff7 libsystem_info.dylib (476) <65D0643A-C8AE-3E8D-9F6E-E4AD823F16B2> /usr/lib/system/libsystem_info.dylib
0x7fff91d8a000 - 0x7fff91d8dffb libdyld.dylib (360.17) <99396189-E53A-3A78-BC49-449236DA7CFF> /usr/lib/system/libdyld.dylib
0x7fff91dfb000 - 0x7fff91e59fff libsystem_network.dylib (582.1.4) /usr/lib/system/libsystem_network.dylib
0x7fff91e7c000 - 0x7fff91ef3fc7 libcorecrypto.dylib (334) <4E1B969F-8449-3B21-9880-51AD58E25AA6> /usr/lib/system/libcorecrypto.dylib
0x7fff92692000 - 0x7fff926bffff libdispatch.dylib (500.10.1) <438F4595-0731-34A2-ACAD-60121A76D1FF> /usr/lib/system/libdispatch.dylib
0x7fff92780000 - 0x7fff9278bff7 libcommonCrypto.dylib (60074) /usr/lib/system/libcommonCrypto.dylib
0x7fff9280b000 - 0x7fff9280eff7 libsystem_sandbox.dylib (459.10.4) /usr/lib/system/libsystem_sandbox.dylib
0x7fff93c83000 - 0x7fff93c9afff libsystem_asl.dylib (322) <97D794DA-8CE5-3676-AC5E-364F6D172BDA> /usr/lib/system/libsystem_asl.dylib
0x7fff947aa000 - 0x7fff9489cff7 libiconv.2.dylib (44) <82529E3B-0485-344C-8075-83C7725D6A6F> /usr/lib/libiconv.2.dylib
0x7fff94d12000 - 0x7fff94d1affb libsystem_dnssd.dylib (624.10.1) <21D63EAB-27BE-3F41-B1D4-604BE7F4C9BA> /usr/lib/system/libsystem_dnssd.dylib
0x7fff951c3000 - 0x7fff951c8ff3 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff95425000 - 0x7fff95427ff7 libquarantine.dylib (80) <1693C5FE-EA0A-3122-85EB-7950ECC7435A> /usr/lib/system/libquarantine.dylib
0x7fff9546e000 - 0x7fff95476fff libsystem_networkextension.dylib (384.1.2) <4736FCC5-9DBA-31F4-AAC8-CD0A177CF502> /usr/lib/system/libsystem_networkextension.dylib
0x7fff95477000 - 0x7fff9547ffef libsystem_platform.dylib (73.1.1) <3F4D2390-E3DE-3C24-A515-95DFAC8671C4> /usr/lib/system/libsystem_platform.dylib
0x7fff95485000 - 0x7fff95496ff7 libsystem_trace.dylib (200) <1D289F35-BFA2-3B9E-BDF9-20F34F9A01D4> /usr/lib/system/libsystem_trace.dylib
0x7fff9555f000 - 0x7fff95568ffb libsystem_notify.dylib (149) <56ABC155-CB99-30A8-A8B1-C204B5615092> /usr/lib/system/libsystem_notify.dylib
0x7fff957ae000 - 0x7fff957b5ff7 libcompiler_rt.dylib (62) <253B36E5-572D-377D-AE99-A02CE32590E5> /usr/lib/system/libcompiler_rt.dylib
0x7fff95d67000 - 0x7fff95d78fff libz.1.dylib (60) <43317BEA-ACA2-34C2-AF37-902AA926C83A> /usr/lib/libz.1.dylib
0x7fff960ec000 - 0x7fff960ecff7 libunc.dylib (29) /usr/lib/system/libunc.dylib
0x7fff966c4000 - 0x7fff966d8fff libsystem_coretls.dylib (82) <21EDACF1-D9B3-3086-9821-60EB75E7F965> /usr/lib/system/libsystem_coretls.dylib
0x7fff96862000 - 0x7fff96863fff libsystem_secinit.dylib (20) <932ED582-E80F-39DA-B0FA-F1BC5F1AD2F8> /usr/lib/system/libsystem_secinit.dylib
0x7fff96908000 - 0x7fff96908ff7 libkeymgr.dylib (28) <47080280-8B57-3D75-8A20-9E100864DE27> /usr/lib/system/libkeymgr.dylib
0x7fff97911000 - 0x7fff97916ff7 libmacho.dylib (875.1) /usr/lib/system/libmacho.dylib
0x7fff981a5000 - 0x7fff981c3fff libsystem_kernel.dylib (3247.10.11) /usr/lib/system/libsystem_kernel.dylib
0x7fff994b4000 - 0x7fff994b5ffb libremovefile.dylib (41) /usr/lib/system/libremovefile.dylib
0x7fff9959d000 - 0x7fff995ccfc3 libsystem_m.dylib (3105) <07D50372-30ED-3B03-9FA0-0662BF8F0098> /usr/lib/system/libsystem_m.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1111725
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=109.7M resident=0K(0%) swapped_out_or_unallocated=109.7M(100%)
Writable regions: Total=42.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=42.4M(100%)

                            VIRTUAL   REGION 

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 2048K 2
Kernel Alloc Once 4K 2
MALLOC 31.9M 12
MALLOC guard page 16K 4
STACK GUARD 56.0M 2
Stack 8192K 2
VM_ALLOCATE 260K 3
__DATA 3572K 63
__LINKEDIT 91.6M 16
__TEXT 18.1M 60
__UNICODE 552K 2
shared memory 8K 3
=========== ======= =======
TOTAL 211.9M 159

Model: MacBookPro11,3, BootROM MBP112.0138.B16, 4 processors, Intel Core i7, 2.8 GHz, 16 GB,

[SmithSamuelM]

Any one else trying to get this to work on OS X El Capitain

[rescrv]

Have you tried doing a clean build, wiping all of HyperDex and reinstalling? It seems to be segfaulting when importing in Python, which I've seen happen with conflicting shared libraries.