Seq2struct #54
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Seq2struct #54
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seq2struct/test.py
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| """Reads a FASTA file (gzipped or plain) and returns sequences and headers.""" | ||
| ref_sequences, ref_headers = {}, [] | ||
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| with open(file_name, 'rt') as file: |
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We should think about where to put these files. A new You should reorganize with that in mind. I am guessing You should also document all of this somewhere, maybe in the README. |
added 8 commits
March 12, 2025 14:05
…ion to reference position
…rather than Rfam tRNA cm model
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approach to map tRNA structure position to sequence position anchoring nanopore sequence space to structure of tRNA.
Mapping file is created using test.py. Needs to be edited to include the "uncharged" 3' adapter sequence and language to distinguish the two tRNAs in reference file.
test data is charged seq of WT ecoli infected or not with T4