From 6d1a140bb7dc84cbdcfb07fa66a8c30977e1457a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Wed, 29 Jun 2016 11:12:06 -0400
Subject: [PATCH 01/30] Added to .gitignore folders Calibration Files, Data,
 and Protocols

---
 .gitignore | 3 +++
 1 file changed, 3 insertions(+)
 create mode 100644 .gitignore

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..7ec3507
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,3 @@
+Calibration Files/**
+Data/**
+Protocols/**
\ No newline at end of file

From fb4c4ebd8767e694ab52c4085f94e8257fb4db57 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Wed, 29 Jun 2016 11:21:08 -0400
Subject: [PATCH 02/30] Added file .gitmodules to .gitignore.

---
 .gitignore | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.gitignore b/.gitignore
index 7ec3507..94f72a9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
 Calibration Files/**
 Data/**
-Protocols/**
\ No newline at end of file
+Protocols/**
+.gitmodules
\ No newline at end of file

From b7e799205c3e10edbfdd9bfe116524befa7e812f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Thu, 30 Jun 2016 15:22:59 -0400
Subject: [PATCH 03/30] Added uicontrol styles 'togglebutton' and 'pushbutton'
 to GUI

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 19 +++++++++++++++++--
 1 file changed, 17 insertions(+), 2 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index c36081b..ae9262e 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -113,8 +113,16 @@
                     case 'popupmenu'
                         BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 4;
                         BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                    case 'togglebutton' % INCOMPLETE
+                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 5;
+                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                    case 'pushbutton'
+                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 6;
+                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'pushbutton', 'String', ThisParamString,...
+                            'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12,...
+                            'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center','Callback',Meta.OdorSettings.Callback);
                     otherwise
-                        error('Invalid parameter style specified. Valid parameters are: ''edit'', ''text'', ''checkbox'', ''popupmenu''');
+                        error('Invalid parameter style specified. Valid parameters are: ''edit'', ''text'', ''checkbox'', ''popupmenu'', ''togglebutton'', ''pushbutton''');
                 end
                 InPanelPos = InPanelPos + 35;
                 ParamNum = ParamNum + 1;
@@ -124,7 +132,7 @@
             if p < nPanels
                 NextPanelParams = Panels.(PanelNames{p+1});
                 NextPanelSize = (length(NextPanelParams)*45) + 5;
-                if VPos + NextPanelSize > GUIHeight
+                if VPos + ThisPanelHeight + 10 + NextPanelSize > GUIHeight
                     Wrap = 1;
                 end
             end
@@ -179,6 +187,13 @@
                     elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
                         set(ThisParamHandle, 'Value', GUIParam);
                     end
+                case 6
+                    GUIParam = get(ThisParamHandle, 'Value');
+                    if GUIParam ~= ThisParamLastValue
+                        Params.GUI.(ThisParamName) = GUIParam;
+                    elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
+                        set(ThisParamHandle, 'Value', GUIParam);
+                    end
             end
             BpodSystem.GUIData.ParameterGUI.LastParamValues{p} = GUIParam;
         end

From bffd7438f3bb64d6f00470ab3fb44957bfa08a37 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Thu, 30 Jun 2016 20:14:32 -0400
Subject: [PATCH 04/30] Work in progress

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 170 ++++++++++--------
 1 file changed, 92 insertions(+), 78 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index ae9262e..6d03b50 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -18,7 +18,7 @@
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %}
 
-function varargout = ParameterGUI(varargin)
+function varargout = BpodParameterGUI(varargin)
 
 % EnhancedParameterGUI('init', ParamStruct) - initializes a GUI with edit boxes for every field in subfield ParamStruct.GUI
 % EnhancedParameterGUI('sync', ParamStruct) - updates the GUI with fields of
@@ -49,13 +49,22 @@
         if isfield(Params, 'GUIPanels')
             Panels = Params.GUIPanels;
             PanelNames = fieldnames(Panels);
-            nPanels = length(PanelNames);
         else
             Panels = struct;
             Panels.Parameters = ParamNames;
             PanelNames = {'Parameters'};
-            nPanels = 1;
         end
+        if isfield(Params, 'GUITabs')
+            Tabs = Params.GUITabs;
+            TabNames = fieldnames(Tabs);
+            nTabs = length(TabNames);
+        else
+            Tabs = struct;
+            Tabs.Panels = PanelNames;
+            TabNames = {'Parameters'};
+            nTabs = 1;
+        end
+        
         Params = Params.GUI;
         PanelNames = PanelNames(end:-1:1);
         GUIHeight = 650;
@@ -63,89 +72,94 @@
         HPos = 10;
         MaxVPos = 0;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
-        ParamNum = 1;
-        for p = 1:nPanels
-            ThisPanelParamNames = Panels.(PanelNames{p});
-            ThisPanelParamNames = ThisPanelParamNames(end:-1:1);
-            nParams = length(ThisPanelParamNames);
-            ThisPanelHeight = (45*nParams)+5;
-            uipanel('title', PanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
-            InPanelPos = 10;
-            for i = 1:nParams
-                ThisParamName = ThisPanelParamNames{i};
-                ThisParam = Params.(ThisParamName);
-                BpodSystem.GUIData.ParameterGUI.ParamNames{ParamNum} = ThisParamName;
-                if ischar(ThisParam)
-                    BpodSystem.GUIData.ParameterGUI.LastParamValues{ParamNum} = NaN;
-                else
-                    BpodSystem.GUIData.ParameterGUI.LastParamValues{ParamNum} = ThisParam;
-                end
-                if isfield(Meta, ThisParamName)
-                    if isstruct(Meta.(ThisParamName))
-                        if isfield(Meta.(ThisParamName), 'Style')
-                            ThisParamStyle = Meta.(ThisParamName).Style;
-                            if isfield(Meta.(ThisParamName), 'String')
-                                ThisParamString = Meta.(ThisParamName).String;
+        for t = 1:nTabs
+            ThisTabPanelNames = Tabs.(TabNames{t});
+            nPanels = length(ThisTabPanelNames);
+            uitab('title', TabNames{t});
+            ParamNum = 1;
+            for p = 1:nPanels
+                ThisPanelParamNames = Panels.(ThisTabPanelNames{p});
+                ThisPanelParamNames = ThisPanelParamNames(end:-1:1);
+                nParams = length(ThisPanelParamNames);
+                ThisPanelHeight = (45*nParams)+5;
+                uipanel('title', PanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
+                InPanelPos = 10;
+                for i = 1:nParams
+                    ThisParamName = ThisPanelParamNames{i};
+                    ThisParam = Params.(ThisParamName);
+                    BpodSystem.GUIData.ParameterGUI.ParamNames{ParamNum} = ThisParamName;
+                    if ischar(ThisParam)
+                        BpodSystem.GUIData.ParameterGUI.LastParamValues{ParamNum} = NaN;
+                    else
+                        BpodSystem.GUIData.ParameterGUI.LastParamValues{ParamNum} = ThisParam;
+                    end
+                    if isfield(Meta, ThisParamName)
+                        if isstruct(Meta.(ThisParamName))
+                            if isfield(Meta.(ThisParamName), 'Style')
+                                ThisParamStyle = Meta.(ThisParamName).Style;
+                                if isfield(Meta.(ThisParamName), 'String')
+                                    ThisParamString = Meta.(ThisParamName).String;
+                                else
+                                    ThisParamString = '';
+                                end
                             else
-                                ThisParamString = '';
+                                error(['Style not specified for parameter ' ThisParamName '.'])
                             end
                         else
-                            error(['Style not specified for parameter ' ThisParamName '.'])
+                            error(['GUIMeta entry for ' ThisParamName ' must be a struct.'])
                         end
                     else
-                        error(['GUIMeta entry for ' ThisParamName ' must be a struct.'])
+                        ThisParamStyle = 'edit';
+                        ThisParamValue = NaN;
                     end
-                else
-                    ThisParamStyle = 'edit';
-                    ThisParamValue = NaN;
-                end
-                BpodSystem.GUIHandles.ParameterGUI.Labels(ParamNum) = uicontrol('Style', 'text', 'String', ThisParamName, 'Position', [HPos+5 VPos+InPanelPos 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                switch lower(ThisParamStyle)
-                    case 'edit'
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 1;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                    case 'text'
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 2;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                    case 'checkbox'
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 3;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                    case 'popupmenu'
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 4;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                    case 'togglebutton' % INCOMPLETE
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 5;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
-                    case 'pushbutton'
-                        BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 6;
-                        BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'pushbutton', 'String', ThisParamString,...
-                            'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12,...
-                            'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center','Callback',Meta.OdorSettings.Callback);
-                    otherwise
-                        error('Invalid parameter style specified. Valid parameters are: ''edit'', ''text'', ''checkbox'', ''popupmenu'', ''togglebutton'', ''pushbutton''');
-                end
-                InPanelPos = InPanelPos + 35;
-                ParamNum = ParamNum + 1;
-            end
-            % Check next panel to see if it will fit, otherwise start new column
-            Wrap = 0;
-            if p < nPanels
-                NextPanelParams = Panels.(PanelNames{p+1});
-                NextPanelSize = (length(NextPanelParams)*45) + 5;
-                if VPos + ThisPanelHeight + 10 + NextPanelSize > GUIHeight
-                    Wrap = 1;
+                    BpodSystem.GUIHandles.ParameterGUI.Labels(ParamNum) = uicontrol('Style', 'text', 'String', ThisParamName, 'Position', [HPos+5 VPos+InPanelPos 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                    switch lower(ThisParamStyle)
+                        case 'edit'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 1;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'text'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 2;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'checkbox'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 3;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'popupmenu'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 4;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'togglebutton' % INCOMPLETE
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 5;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'pushbutton'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 6;
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'pushbutton', 'String', ThisParamString,...
+                                'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12,...
+                                'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center','Callback',Meta.OdorSettings.Callback);
+                        otherwise
+                            error('Invalid parameter style specified. Valid parameters are: ''edit'', ''text'', ''checkbox'', ''popupmenu'', ''togglebutton'', ''pushbutton''');
+                    end
+                    InPanelPos = InPanelPos + 35;
+                    ParamNum = ParamNum + 1;
                 end
-            end
-            VPos = VPos + ThisPanelHeight + 10;
-            if Wrap
-                HPos = HPos + 450;
-                if VPos > MaxVPos
-                    MaxVPos = VPos;
+                % Check next panel to see if it will fit, otherwise start new column
+                Wrap = 0;
+                if p < nPanels
+                    NextPanelParams = Panels.(PanelNames{p+1});
+                    NextPanelSize = (length(NextPanelParams)*45) + 5;
+                    if VPos + ThisPanelHeight + 10 + NextPanelSize > GUIHeight
+                        Wrap = 1;
+                    end
                 end
-                VPos = 10;
-            else
-                if VPos > MaxVPos
-                    MaxVPos = VPos;
+                VPos = VPos + ThisPanelHeight + 10;
+                if Wrap
+                    HPos = HPos + 450;
+                    if VPos > MaxVPos
+                        MaxVPos = VPos;
+                    end
+                    VPos = 10;
+                else
+                    if VPos > MaxVPos
+                        MaxVPos = VPos;
+                    end
                 end
             end
         end

From d138406e3f9ac1878d42e813fee93c9daad8c8f8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Tue, 5 Jul 2016 10:59:16 -0400
Subject: [PATCH 05/30] Tabs working. Now adding uitable.

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 40 +++++++++++--------
 1 file changed, 23 insertions(+), 17 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 6d03b50..762a937 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -68,21 +68,24 @@
         Params = Params.GUI;
         PanelNames = PanelNames(end:-1:1);
         GUIHeight = 650;
-        VPos = 10;
-        HPos = 10;
         MaxVPos = 0;
+        MaxHPos = 0;
+        ParamNum = 1;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
+        BpodSystem.GUIHandles.ParameterGUI.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
         for t = 1:nTabs
+            VPos = 10;
+            HPos = 10;
             ThisTabPanelNames = Tabs.(TabNames{t});
             nPanels = length(ThisTabPanelNames);
-            uitab('title', TabNames{t});
-            ParamNum = 1;
+            htab = uitab('title', TabNames{t});
+            BpodSystem.GUIHandles.ParameterGUI.Tab{t} = htab;
             for p = 1:nPanels
                 ThisPanelParamNames = Panels.(ThisTabPanelNames{p});
                 ThisPanelParamNames = ThisPanelParamNames(end:-1:1);
                 nParams = length(ThisPanelParamNames);
                 ThisPanelHeight = (45*nParams)+5;
-                uipanel('title', PanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
+                uipanel(htab,'title', ThisTabPanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
                 InPanelPos = 10;
                 for i = 1:nParams
                     ThisParamName = ThisPanelParamNames{i};
@@ -112,26 +115,26 @@
                         ThisParamStyle = 'edit';
                         ThisParamValue = NaN;
                     end
-                    BpodSystem.GUIHandles.ParameterGUI.Labels(ParamNum) = uicontrol('Style', 'text', 'String', ThisParamName, 'Position', [HPos+5 VPos+InPanelPos 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                    BpodSystem.GUIHandles.ParameterGUI.Labels(ParamNum) = uicontrol(htab,'Style', 'text', 'String', ThisParamName, 'Position', [HPos+5 VPos+InPanelPos 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                     switch lower(ThisParamStyle)
                         case 'edit'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 1;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'text'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 2;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'checkbox'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 3;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'popupmenu'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 4;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'togglebutton' % INCOMPLETE
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 5;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'pushbutton'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 6;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol('Style', 'pushbutton', 'String', ThisParamString,...
+                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'pushbutton', 'String', ThisParamString,...
                                 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12,...
                                 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center','Callback',Meta.OdorSettings.Callback);
                         otherwise
@@ -143,9 +146,9 @@
                 % Check next panel to see if it will fit, otherwise start new column
                 Wrap = 0;
                 if p < nPanels
-                    NextPanelParams = Panels.(PanelNames{p+1});
+                    NextPanelParams = Panels.(ThisTabPanelNames{p+1});
                     NextPanelSize = (length(NextPanelParams)*45) + 5;
-                    if VPos + ThisPanelHeight + 10 + NextPanelSize > GUIHeight
+                    if VPos + ThisPanelHeight + 45 + NextPanelSize > GUIHeight
                         Wrap = 1;
                     end
                 end
@@ -161,9 +164,12 @@
                         MaxVPos = VPos;
                     end
                 end
-            end
-        end
-        set(BpodSystem.ProtocolFigures.ParameterGUI, 'Position', [50 50 HPos+450 MaxVPos+10]);
+                if HPos > MaxHPos
+                    MaxHPos = HPos;
+                end
+                set(BpodSystem.ProtocolFigures.ParameterGUI, 'Position', [50 50 MaxHPos+450 MaxVPos+45]);
+            end            
+        end        
     case 'sync'
         ParamNames = BpodSystem.GUIData.ParameterGUI.ParamNames;
         nParams = BpodSystem.GUIData.ParameterGUI.nParams;

From 53f84260947f6f812cc73f5cffb6a99e1a5cbdeb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Tue, 5 Jul 2016 15:46:15 -0400
Subject: [PATCH 06/30] Accepts meta.style uitables. Stores handles in Matlab
 2016.

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 59 +++++++++++++++----
 1 file changed, 47 insertions(+), 12 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 762a937..d45606b 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -39,7 +39,7 @@
         BpodSystem.GUIData.ParameterGUI.ParamNames = cell(1,nParams);
         BpodSystem.GUIData.ParameterGUI.nParams = nParams;
         BpodSystem.GUIHandles.ParameterGUI.Labels = zeros(1,nParams);
-        BpodSystem.GUIHandles.ParameterGUI.Params = zeros(1,nParams);
+        BpodSystem.GUIHandles.ParameterGUI.Params = cell(1,nParams);
         BpodSystem.GUIData.ParameterGUI.LastParamValues = cell(1,nParams);
         if isfield(Params, 'GUIMeta')
             Meta = Params.GUIMeta;
@@ -72,20 +72,20 @@
         MaxHPos = 0;
         ParamNum = 1;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
-        BpodSystem.GUIHandles.ParameterGUI.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
+        BpodSystem.GUIHandles.ParameterGUI.Tabs.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
         for t = 1:nTabs
             VPos = 10;
             HPos = 10;
             ThisTabPanelNames = Tabs.(TabNames{t});
             nPanels = length(ThisTabPanelNames);
-            htab = uitab('title', TabNames{t});
-            BpodSystem.GUIHandles.ParameterGUI.Tab{t} = htab;
+            BpodSystem.GUIHandles.ParameterGUI.Tabs.(TabNames{t}) = uitab('title', TabNames{t});
+            htab = BpodSystem.GUIHandles.ParameterGUI.Tabs.(TabNames{t});
             for p = 1:nPanels
                 ThisPanelParamNames = Panels.(ThisTabPanelNames{p});
                 ThisPanelParamNames = ThisPanelParamNames(end:-1:1);
                 nParams = length(ThisPanelParamNames);
                 ThisPanelHeight = (45*nParams)+5;
-                uipanel(htab,'title', ThisTabPanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
+                BpodSystem.GUIHandles.ParameterGUI.Panels.(ThisTabPanelNames{p}) = uipanel(htab,'title', ThisTabPanelNames{p},'FontSize',12, 'FontWeight', 'Bold', 'BackgroundColor','white','Units','Pixels', 'Position',[HPos VPos 430 ThisPanelHeight]);
                 InPanelPos = 10;
                 for i = 1:nParams
                     ThisParamName = ThisPanelParamNames{i};
@@ -119,24 +119,45 @@
                     switch lower(ThisParamStyle)
                         case 'edit'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 1;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'text'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 2;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'checkbox'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 3;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'checkbox', 'Value', ThisParam, 'String', '   (check to activate)', 'Position', [HPos+220 VPos+InPanelPos+4 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'popupmenu'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 4;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'popupmenu', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'togglebutton' % INCOMPLETE
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 5;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'togglebutton', 'String', ThisParamString, 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'pushbutton'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 6;
-                            BpodSystem.GUIHandles.ParameterGUI.Params(ParamNum) = uicontrol(htab,'Style', 'pushbutton', 'String', ThisParamString,...
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'pushbutton', 'String', ThisParamString,...
                                 'Value', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12,...
                                 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center','Callback',Meta.OdorSettings.Callback);
+                        case 'table'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 7;
+                            columnNames = fieldnames(Params.(ThisParamName));
+                            if isfield(Meta.(ThisParamName),'ColumnLabel')
+                                columnLabel = Meta.(ThisParamName).ColumnLabel;
+                            else
+                                columnLabel = columnNames;
+                            end
+                            tableData = [];
+                            for iTableCol = 1:numel(columnNames)
+                                tableData = [tableData, Params.(ThisParamName).(columnNames{iTableCol})];
+                            end
+%                             tableData(:,2) = tableData(:,2)/sum(tableData(:,2));
+                            htable = uitable(htab,'data',tableData,'columnname',columnLabel,...
+                                'ColumnEditable',[true true], 'FontSize', 12);
+                            htable.Position([3 4]) = htable.Extent([3 4]);
+                            htable.Position([1 2]) = [HPos+220 VPos+InPanelPos+2];
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = htable;
+                            ThisPanelHeight = ThisPanelHeight + (htable.Position(4)-25);
+                            BpodSystem.GUIHandles.ParameterGUI.Panels.(ThisTabPanelNames{p}).Position(4) = ThisPanelHeight;
+                            BpodSystem.GUIData.ParameterGUI.LastParamValues{ParamNum} = htable.Data;
                         otherwise
                             error('Invalid parameter style specified. Valid parameters are: ''edit'', ''text'', ''checkbox'', ''popupmenu'', ''togglebutton'', ''pushbutton''');
                     end
@@ -176,7 +197,7 @@
         for p = 1:nParams
             ThisParamName = ParamNames{p};
             ThisParamStyle = BpodSystem.GUIData.ParameterGUI.Styles(p);
-            ThisParamHandle = BpodSystem.GUIHandles.ParameterGUI.Params(p);
+            ThisParamHandle = BpodSystem.GUIHandles.ParameterGUI.Params{p};
             ThisParamLastValue = BpodSystem.GUIData.ParameterGUI.LastParamValues{p};
             switch ThisParamStyle
                 case 1 % Edit
@@ -214,6 +235,20 @@
                     elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
                         set(ThisParamHandle, 'Value', GUIParam);
                     end
+                case 7
+                    GUIParam = ThisParamHandle.Data;
+                    columnNames = fieldnames(Params.GUI.(ThisParamName));
+                    argData = [];
+                    for iColumn = 1:numel(columnNames)
+                        argData = [argData, Params.GUI.(ThisParamName).(columnNames{iColumn})];
+                    end
+                    if any(GUIParam(:) ~= ThisParamLastValue(:)) % Change originated in the GUI propagates to TaskParameters
+                        for iColumn = 1:numel(columnNames)
+                            Params.GUI.(ThisParamName).(columnNames{iColumn}) = GUIParam(:,iColumn);
+                        end
+                    elseif any(argData(:) ~= ThisParamLastValue(:)) % Change originated in TaskParameters propagates to the GUI
+                        ThisParamHandle.Data = argData;
+                    end
             end
             BpodSystem.GUIData.ParameterGUI.LastParamValues{p} = GUIParam;
         end

From a1a82cafda875f21fd6ee17b2c4f612668106878 Mon Sep 17 00:00:00 2001
From: lclclclclclclc <lclclclclclclc@users.noreply.github.com>
Date: Fri, 15 Jul 2016 14:51:47 -0400
Subject: [PATCH 07/30] Added purpose of Kepecs Bpod fork

---
 README.md | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 2d1ca2a..c72b2c5 100644
--- a/README.md
+++ b/README.md
@@ -1 +1,6 @@
-# Bpod
\ No newline at end of file
+# Bpod
+
+Kepecs Lab workspace, forked from Sanworks.
+
+Used to modify Bpod code for use in Kepecs Lab.
+General improvements will be contributed to Sanworks' repo.

From 0186480bec4545f937bea6a48d48074baaa2ca34 Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Thu, 4 Aug 2016 12:16:52 -0400
Subject: [PATCH 08/30] Bpod Settings, Calibration Files, and Protocols are
 saved in the user-specific home directory (e.g. /Users/JoeUser/BpodUser/).
 This BpodUser directory is created automatically if not found.
 BpodInputConfig copied to this new directory automatically. Calibration files
 and protocols and data (if desired) must be copied manually. I've tested this
 on PC but not OSX or Unix !!! Related to #2 and #4

---
 Functions/Internal Functions/BpodObject.m     | 44 +++++++++++++++----
 .../SaveBpodSystemSettings.m                  |  2 +-
 2 files changed, 36 insertions(+), 10 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index 997bde8..d567839 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -32,6 +32,7 @@
         ProtocolSettings
         Data
         BpodPath
+        BpodUserPath % FS MOD
         SettingsPath
         DataPath
         ProtocolPath
@@ -117,15 +118,29 @@
             
             obj.HostOS = system_dependent('getos');
             obj.BpodPath = BpodPath;
-            dir_calfiles = dir( fullfile(obj.BpodPath,'Calibration Files') );
+%% FS MOD
+            if ispc 
+                import java.lang.*;
+                S.BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+                if ~isdir(S.BpodUserPath)
+                    mkdir(S.BpodUserPath);
+                    disp('*** Bpod User Directories Not Found, Creating them ***');
+                end
+            elseif ~isdir(fullfile('~', 'BpodUser')) % tilde works on UNIX and MAC platforms to specify user home directory
+                mkdir(fullfile('~', 'BpodUser'));
+                disp('*** Bpod User Directories Not Found, Creating them ***');                
+            end
+            obj.BpodUserPath = S.BpodUserPath;
+            %%
+            dir_calfiles = dir(fullfile(obj.BpodUserPath,'Calibration Files') ); % FS MOD
             if length(dir_calfiles) == 0, %then Cal Folder didn't exist.
-                mkdir(fullfile(obj.BpodPath,'Calibration Files'));
+                mkdir(fullfile(obj.BpodUserPath,'Calibration Files')); % FS MOD
                 obj.CalibrationTables.LiquidCal = [];
                 obj.CalibrationTables.SoundCal = [];
             else
                 % Liquid
                 try
-                    LiquidCalibrationFilePath = fullfile(obj.BpodPath, 'Calibration Files', 'LiquidCalibration.mat');
+                    LiquidCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat'); % FS MOD
                     load(LiquidCalibrationFilePath);
                     obj.CalibrationTables.LiquidCal = LiquidCal;
                 catch
@@ -133,7 +148,7 @@
                 end
                 % Sound
                 try
-                    SoundCalibrationFilePath = fullfile(obj.BpodPath, 'Calibration Files', 'SoundCalibration.mat');
+                    SoundCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'SoundCalibration.mat'); % FS MOD
                     load(SoundCalibrationFilePath);
                     obj.CalibrationTables.SoundCal = SoundCal;
                 catch
@@ -141,8 +156,14 @@
                 end
             end
             % Load input channel settings
-            obj.InputConfigPath = fullfile(obj.BpodPath, 'Settings Files', 'BpodInputConfig.mat');
-            load(obj.InputConfigPath);
+            obj.InputConfigPath = fullfile(obj.BpodUserPath, 'Settings Files', 'BpodInputConfig.mat'); % FS MOD
+            try
+                load(obj.InputConfigPath);
+            catch
+                mkdir(fullfile(obj.BpodUserPath,'Settings Files')); % FS MOD                
+                copyfile(fullfile(obj.BpodPath, 'Settings Files', 'BpodInputConfig.mat'), fullfile(obj.BpodUserPath, 'Settings Files'));
+                load(obj.InputConfigPath);                
+            end
             obj.InputsEnabled = BpodInputConfig;
 
             % Determine if PsychToolbox is installed. If so, serial communication
@@ -155,9 +176,9 @@
                 obj.UsesPsychToolbox = 0;
             end
             %Check for Data folder
-            dir_data = dir(fullfile(obj.BpodPath,'Data'));
+            dir_data = dir(fullfile(obj.BpodUserPath,'Data')); % FS MOD
             if length(dir_data) == 0, %then Data didn't exist.
-                mkdir(fullfile(obj.BpodPath, 'Data'));
+                mkdir(fullfile(obj.BpodUserPath, 'Data'));
             end
         end
         function obj = InitializeHardware(obj, portString)
@@ -425,7 +446,12 @@
             set(obj.GUIHandles.MainFig,'handlevisibility','off');
 
             % Load protocols into selector
-            ProtocolPath = fullfile(obj.BpodPath,'Protocols');
+ %% FS MOD             
+            ProtocolPath = fullfile(obj.BpodUserPath,'Protocols');
+            if ~isdir(ProtocolPath)
+                mkdir(ProtocolPath)
+            end
+%%            
             Candidates = dir(ProtocolPath);
             ProtocolNames = cell(1);
             nCandidates = length(Candidates)-2;
diff --git a/Functions/Internal Functions/SaveBpodSystemSettings.m b/Functions/Internal Functions/SaveBpodSystemSettings.m
index 40130f8..55f93a1 100644
--- a/Functions/Internal Functions/SaveBpodSystemSettings.m	
+++ b/Functions/Internal Functions/SaveBpodSystemSettings.m	
@@ -1,4 +1,4 @@
 function SaveBpodSystemSettings
 global BpodSystem
 BpodSystemSettings = BpodSystem.SystemSettings;
-save(fullfile(BpodSystem.BpodPath, 'Settings Files', 'BpodSystemSettings.mat'), 'BpodSystemSettings');
\ No newline at end of file
+save(fullfile(BpodSystem.BpodUserPath, 'Settings Files', 'BpodSystemSettings.mat'), 'BpodSystemSettings'); % FS MOD
\ No newline at end of file

From c4160598a858cfec5dd350a126552450fb8ff045 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Fri, 5 Aug 2016 17:29:29 -0400
Subject: [PATCH 09/30] checks for calibration and settings folders in
 BpodUserPath first and copies whole folder, if they don't exist. removes
 unecessary logical cses.

---
 Functions/Internal Functions/BpodObject.m | 50 +++++++++++------------
 1 file changed, 23 insertions(+), 27 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index d567839..037dcaa 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -132,38 +132,34 @@
             end
             obj.BpodUserPath = S.BpodUserPath;
             %%
-            dir_calfiles = dir(fullfile(obj.BpodUserPath,'Calibration Files') ); % FS MOD
-            if length(dir_calfiles) == 0, %then Cal Folder didn't exist.
-                mkdir(fullfile(obj.BpodUserPath,'Calibration Files')); % FS MOD
+            %setting up costum folders
+            if ~isdir(fullfile(obj.BpodUserPath,'Calibration Files')) %then Cal Folder didn't exist.
+                copyfile(fullfile(obj.BpodPath, 'Calibration Files'),fullfile(obj.BpodUserPath,'Calibration Files')); % FS MOD
+            end
+            if ~isdir(fullfile(obj.BpodUserPath,'Settings Files'))
+                copyfile(fullfile(obj.BpodPath, 'Settings Files'), fullfile(obj.BpodUserPath, 'Settings Files'));
+            end
+            
+            % Liquid
+            try
+                LiquidCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat'); % FS MOD
+                load(LiquidCalibrationFilePath);
+                obj.CalibrationTables.LiquidCal = LiquidCal;
+            catch
                 obj.CalibrationTables.LiquidCal = [];
-                obj.CalibrationTables.SoundCal = [];
-            else
-                % Liquid
-                try
-                    LiquidCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat'); % FS MOD
-                    load(LiquidCalibrationFilePath);
-                    obj.CalibrationTables.LiquidCal = LiquidCal;
-                catch
-                  obj.CalibrationTables.LiquidCal = [];  
-                end
-                % Sound
-                try
-                    SoundCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'SoundCalibration.mat'); % FS MOD
-                    load(SoundCalibrationFilePath);
-                    obj.CalibrationTables.SoundCal = SoundCal;
-                catch
-                  obj.CalibrationTables.SoundCal = [];  
-                end
             end
-            % Load input channel settings
-            obj.InputConfigPath = fullfile(obj.BpodUserPath, 'Settings Files', 'BpodInputConfig.mat'); % FS MOD
+            % Sound
             try
-                load(obj.InputConfigPath);
+                SoundCalibrationFilePath = fullfile(obj.BpodUserPath, 'Calibration Files', 'SoundCalibration.mat'); % FS MOD
+                load(SoundCalibrationFilePath);
+                obj.CalibrationTables.SoundCal = SoundCal;
             catch
-                mkdir(fullfile(obj.BpodUserPath,'Settings Files')); % FS MOD                
-                copyfile(fullfile(obj.BpodPath, 'Settings Files', 'BpodInputConfig.mat'), fullfile(obj.BpodUserPath, 'Settings Files'));
-                load(obj.InputConfigPath);                
+                obj.CalibrationTables.SoundCal = [];
             end
+            
+            % Load input channel settings
+            obj.InputConfigPath = fullfile(obj.BpodUserPath, 'Settings Files', 'BpodInputConfig.mat'); % FS MOD
+            load(obj.InputConfigPath);
             obj.InputsEnabled = BpodInputConfig;
 
             % Determine if PsychToolbox is installed. If so, serial communication

From 62246eed0845ff81ccd0c243be10565db1adf4fd Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Mon, 8 Aug 2016 19:11:11 -0400
Subject: [PATCH 10/30] In progress, still need to finish updating instances of
 BpodPath

---
 Functions/Launch manager/LaunchManager.m | 32 ++++++++++++------------
 1 file changed, 16 insertions(+), 16 deletions(-)

diff --git a/Functions/Launch manager/LaunchManager.m b/Functions/Launch manager/LaunchManager.m
index 1239bd8..6c9df4c 100644
--- a/Functions/Launch manager/LaunchManager.m	
+++ b/Functions/Launch manager/LaunchManager.m	
@@ -91,9 +91,9 @@ function LaunchManager_OpeningFcn(hObject, eventdata, handles, varargin)
 % Check to see if a folder for this protocol's name exists, and if not, make one
 % along with default files for the default test subject named "Test Session"
 
-DataPath = fullfile(BpodSystem.BpodPath,'Data',DummySubjectString);
+DataPath = fullfile(BpodSystem.BpodUserPath,'Data',DummySubjectString);
 ProtocolName = BpodSystem.CurrentProtocolName;
-ProtocolPath = fullfile(BpodSystem.BpodPath,'Protocols',ProtocolName);
+ProtocolPath = fullfile(BpodSystem.BpodUserPath,'Protocols',ProtocolName);
 SettingsPath = fullfile(DataPath,ProtocolName,'Session Settings');
 DefaultSettingsPath = fullfile(ProtocolPath,'SessionSettings.mat');
 
@@ -113,7 +113,7 @@ function LaunchManager_OpeningFcn(hObject, eventdata, handles, varargin)
 % Make a list of the names of all subjects who already have a folder for this
 % protocol.
 
-DataPath = fullfile(BpodSystem.BpodPath,'Data');
+DataPath = fullfile(BpodSystem.BpodUserPath,'Data');
 CandidateSubjects = dir(DataPath);
 SubjectNames = cell(1);
 nSubjects = 1;
@@ -133,7 +133,7 @@ function LaunchManager_OpeningFcn(hObject, eventdata, handles, varargin)
 end
 set(handles.listbox1,'String',SubjectNames);
 
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',DummySubjectString, ProtocolName,'Session Settings');
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',DummySubjectString, ProtocolName,'Session Settings');
 Candidates = dir(SettingsPath);
 nSettingsFiles = 0;
 SettingsFileNames = cell(1);
@@ -211,7 +211,7 @@ function listbox1_Callback(hObject, eventdata, handles)
     else
         SelectedName = NameList;
     end
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SelectedName,ProtocolName,'Session Settings');
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SelectedName,ProtocolName,'Session Settings');
 Candidates = dir(SettingsPath);
 nSettingsFiles = 0;
 SettingsFileNames = cell(1);
@@ -268,7 +268,7 @@ function pushbutton1_Callback(hObject, eventdata, handles)
     if ~isempty(SettingsFileName) && ~isempty(NameList)
         ProtocolName = BpodSystem.CurrentProtocolName;
         FormattedDate = [datestr(now, 3) datestr(now, 7) '_' datestr(now, 10)];
-        DataFolder = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName, 'Session Data');
+        DataFolder = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName, 'Session Data');
         Candidates = dir(DataFolder);
         nSessionsToday = 0;
         for x = 1:length(Candidates)
@@ -278,11 +278,11 @@ function pushbutton1_Callback(hObject, eventdata, handles)
                 end
             end
         end
-        DataPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName,'Session Data',[SubjectName '_' ProtocolName '_' FormattedDate '_Session' num2str(nSessionsToday+1) '.mat']);
-        SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName, 'Session Settings',[SettingsFileName '.mat']);
+        DataPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName,'Session Data',[SubjectName '_' ProtocolName '_' FormattedDate '_Session' num2str(nSessionsToday+1) '.mat']);
+        SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName, 'Session Settings',[SettingsFileName '.mat']);
         BpodSystem.DataPath = DataPath;
         BpodSystem.SettingsPath = SettingsPath;
-        ProtocolPath = fullfile(BpodSystem.BpodPath,'Protocols',ProtocolName,[ProtocolName '.m']);
+        ProtocolPath = fullfile(BpodSystem.BpodUserPath,'Protocols',ProtocolName,[ProtocolName '.m']);
         close(LaunchManager)
         BpodSystem.Live = 1;
         BpodSystem.GUIData.ProtocolName = ProtocolName;
@@ -331,9 +331,9 @@ function pushbutton2_Callback(hObject, eventdata, handles)  % ------------------
 NewName = Spaces2Underscores(NewName);
 % Check to see if subject already exists
 ProtocolName = BpodSystem.CurrentProtocolName;
-Testpath = fullfile(BpodSystem.BpodPath,'Data',NewName);
+Testpath = fullfile(BpodSystem.BpodUserPath,'Data',NewName);
 Testpath2 = fullfile(Testpath,ProtocolName);
-ProtocolPath = fullfile(BpodSystem.BpodPath,'Protocols',ProtocolName);
+ProtocolPath = fullfile(BpodSystem.BpodUserPath,'Protocols',ProtocolName);
 NewAnimal = 0;
 if exist(Testpath) ~= 7
     mkdir(Testpath);
@@ -397,7 +397,7 @@ function pushbutton3_Callback(hObject, eventdata, handles)
     catch
     end
     if ((OkToDelete == 1) && (~isempty(SelectedName)))
-        DeletePath = fullfile(BpodSystem.BpodPath,'Data',SelectedName);
+        DeletePath = fullfile(BpodSystem.BpodUserPath,'Data',SelectedName);
          rmdir(DeletePath,'s')
         BpodErrorSound;
          msgbox(['       Entry  for ' SelectedName ' deleted!'], 'Modal');
@@ -459,7 +459,7 @@ function pushbutton4_Callback(hObject, eventdata, handles)
 SubjectName = SubjectNameList{SubjectNameValue};
 % Check to see if subject already exists
 ProtocolName = BpodSystem.CurrentProtocolName;
-Testpath = 			fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName,'Session Settings',[NewSettingsName '.mat' ]);
+Testpath = 			fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName,'Session Settings',[NewSettingsName '.mat' ]);
 if exist(Testpath) == 0
     SettingsPath = Testpath;
     ProtocolSettings = struct;
@@ -502,13 +502,13 @@ function pushbutton5_Callback(hObject, eventdata, handles)
 Selected = get(handles.listbox2, 'Value');
 SettingsFileName = NameList{Selected};
 ProtocolName = BpodSystem.CurrentProtocolName;
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsFileName '.mat']);
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsFileName '.mat']);
 delete(SettingsPath);
 BpodErrorSound;
 msgbox(['Settings file ' SettingsFileName ' deleted!'], 'Modal');
 set(handles.listbox2, 'Value', 1);
 % Update UI with new settings
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName, ProtocolName,'Session Settings');
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName, ProtocolName,'Session Settings');
 Candidates = dir(SettingsPath);
 nSettingsFiles = 0;
 SettingsFileNames = cell(1);
@@ -549,7 +549,7 @@ function pushbutton6_Callback(hObject, eventdata, handles)
 Selected = get(handles.listbox2, 'Value');
 SettingsFileName = NameList{Selected};
 ProtocolName = BpodSystem.CurrentProtocolName;
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsFileName '.mat']);
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsFileName '.mat']);
 BpodSystem.SettingsPath = SettingsPath;
 evalin('base', ['load(''' SettingsPath ''')'])
 clc

From eda212840d0b89d37015534c08e841fc7f74f2d3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Mon, 8 Aug 2016 22:27:14 -0400
Subject: [PATCH 11/30] Removes reference to undefined variable S. Moves
 redundant bits of code out of if clause.

---
 Functions/Internal Functions/BpodObject.m | 15 ++++++---------
 1 file changed, 6 insertions(+), 9 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index 037dcaa..5093815 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -121,17 +121,14 @@
 %% FS MOD
             if ispc 
                 import java.lang.*;
-                S.BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
-                if ~isdir(S.BpodUserPath)
-                    mkdir(S.BpodUserPath);
-                    disp('*** Bpod User Directories Not Found, Creating them ***');
+                obj.BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+            else
+                obj.BpodUserPath = fullfile('~', 'BpodUser');
                 end
-            elseif ~isdir(fullfile('~', 'BpodUser')) % tilde works on UNIX and MAC platforms to specify user home directory
-                mkdir(fullfile('~', 'BpodUser'));
-                disp('*** Bpod User Directories Not Found, Creating them ***');                
+            if ~isdir(obj.BpodUserPath)
+                mkdir(obj.BpodUserPath);
+                warning(['Bpod user directory not found. Directory created at ' obj.BpodUserPath]);
             end
-            obj.BpodUserPath = S.BpodUserPath;
-            %%
             %setting up costum folders
             if ~isdir(fullfile(obj.BpodUserPath,'Calibration Files')) %then Cal Folder didn't exist.
                 copyfile(fullfile(obj.BpodPath, 'Calibration Files'),fullfile(obj.BpodUserPath,'Calibration Files')); % FS MOD

From a988ae505fd83d7a2b8e0e7a88bb8670fb6a7f53 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Thiago=20Gouve=CC=82a?= <tsgouvea@gmail.com>
Date: Tue, 9 Aug 2016 17:18:33 -0400
Subject: [PATCH 12/30] Fixes bug with unspecified tabs

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index d45606b..6abf061 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -55,16 +55,14 @@
             PanelNames = {'Parameters'};
         end
         if isfield(Params, 'GUITabs')
-            Tabs = Params.GUITabs;
-            TabNames = fieldnames(Tabs);
-            nTabs = length(TabNames);
+            Tabs = Params.GUITabs;            
         else
             Tabs = struct;
-            Tabs.Panels = PanelNames;
-            TabNames = {'Parameters'};
-            nTabs = 1;
+            Tabs.Parameters = PanelNames;
         end
-        
+        TabNames = fieldnames(Tabs);
+        nTabs = length(TabNames);
+            
         Params = Params.GUI;
         PanelNames = PanelNames(end:-1:1);
         GUIHeight = 650;

From ce7b9acbe35ec12ea24bd2b747f9f05d0387f1c2 Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Tue, 6 Sep 2016 16:14:42 -0400
Subject: [PATCH 13/30] Updated LaunchManager, RunProtocol,
 BpodLiquidCalibration, and Pipeline to utilize BpodSystem.BpodUserPath where
 appropriate. Still need to test these changes on a rig.

---
 Functions/Launch manager/LaunchManager.m               |  6 +++---
 Functions/Launch manager/RunProtocol.m                 |  4 ++--
 Functions/LiquidCalibrator/BpodLiquidCalibration.m     | 10 +++++-----
 Functions/Plugins/Pipeline/Pipeline.m                  |  4 ++--
 .../Plugins/RechiaOlfactometer/OlfactometerConfig.m    |  3 +++
 5 files changed, 15 insertions(+), 12 deletions(-)

diff --git a/Functions/Launch manager/LaunchManager.m b/Functions/Launch manager/LaunchManager.m
index 6c9df4c..74a6aba 100644
--- a/Functions/Launch manager/LaunchManager.m	
+++ b/Functions/Launch manager/LaunchManager.m	
@@ -567,7 +567,7 @@ function pushbutton7_Callback(hObject, eventdata, handles)
 % eventdata  reserved - to be defined in a future version of MATLAB
 % handles    structure with handles and user data (see GUIDATA)
 global BpodSystem;
-SearchStartPath = fullfile(BpodSystem.BpodPath, 'Data');
+SearchStartPath = fullfile(BpodSystem.BpodUserPath, 'Data');
 [Filename Pathname Junk] = uigetfile('*.mat', 'Select settings to import', SearchStartPath);
 SettingsName = Filename(1:(length(Filename)-4));
 TargetSettingsPath = [Pathname Filename];
@@ -582,7 +582,7 @@ function pushbutton7_Callback(hObject, eventdata, handles)
 Selected = get(handles.listbox1, 'Value');
 SubjectName = NameList{Selected};
 ProtocolName = BpodSystem.CurrentProtocolName;
-DestinationSettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsName '.mat']);
+DestinationSettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName,ProtocolName,'Session Settings',[ SettingsName '.mat']);
 
 if (exist(DestinationSettingsPath) == 2)
     msgbox(['"' SettingsName '"' ' already exists in the target folder. Import aborted.'])
@@ -593,7 +593,7 @@ function pushbutton7_Callback(hObject, eventdata, handles)
 copyfile(TargetSettingsPath, DestinationSettingsPath);
 
 % Update UI with new settings
-SettingsPath = fullfile(BpodSystem.BpodPath,'Data',SubjectName, ProtocolName,'Session Settings');
+SettingsPath = fullfile(BpodSystem.BpodUserPath,'Data',SubjectName, ProtocolName,'Session Settings');
 Candidates = dir(SettingsPath);
 nSettingsFiles = 0;
 SettingsFileNames = cell(1);
diff --git a/Functions/Launch manager/RunProtocol.m b/Functions/Launch manager/RunProtocol.m
index 6f5a2ef..380e24a 100644
--- a/Functions/Launch manager/RunProtocol.m	
+++ b/Functions/Launch manager/RunProtocol.m	
@@ -27,7 +27,7 @@ function RunProtocol(Opstring)
             SelectedProtocol = get(BpodSystem.GUIHandles.ProtocolSelector, 'Value');
             SelectedProtocolName = ProtocolNames{SelectedProtocol};
             BpodSystem.CurrentProtocolName = SelectedProtocolName;
-            addpath(fullfile(BpodSystem.BpodPath, 'Protocols', SelectedProtocolName));
+            addpath(fullfile(BpodSystem.BpodUserPath, 'Protocols', SelectedProtocolName));
             LaunchManager;
         else
             if BpodSystem.Pause == 0
@@ -45,7 +45,7 @@ function RunProtocol(Opstring)
             disp(' ')
             disp([BpodSystem.CurrentProtocolName ' ended.'])
         end
-        rmpath(fullfile(BpodSystem.BpodPath, 'Protocols', BpodSystem.CurrentProtocolName));
+        rmpath(fullfile(BpodSystem.BpodUserPath, 'Protocols', BpodSystem.CurrentProtocolName));
         BpodSystem.BeingUsed = 0;
         BpodSystem.CurrentProtocolName = '';
         BpodSystem.SettingsPath = '';
diff --git a/Functions/LiquidCalibrator/BpodLiquidCalibration.m b/Functions/LiquidCalibrator/BpodLiquidCalibration.m
index a0294d1..f21f933 100644
--- a/Functions/LiquidCalibrator/BpodLiquidCalibration.m
+++ b/Functions/LiquidCalibrator/BpodLiquidCalibration.m
@@ -40,7 +40,7 @@
         
         % Setup calibration
         BpodSystem.PluginObjects.LiquidCal.PendingMeasurements = cell(1,8);
-        CalibrationFilePath = fullfile(BpodSystem.BpodPath, 'Calibration Files', 'LiquidCalibration.mat');
+        CalibrationFilePath = fullfile(BpodSystem.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat');
         if exist(CalibrationFilePath) == 2
             load(CalibrationFilePath);
         else
@@ -329,11 +329,11 @@ function RemoveMeasurement(varargin)
         BpodSystem.PluginObjects.LiquidCal.CalData(CurrentValve).Coeffs = [];
     end
     % Save file
-    TestSavePath = fullfile(BpodSystem.BpodPath, 'Calibration Files');
+    TestSavePath = fullfile(BpodSystem.BpodUserPath, 'Calibration Files');
     if exist(TestSavePath) ~= 7
         mkdir(TestSavePath);
     end
-    SavePath = fullfile(BpodSystem.BpodPath, 'Calibration Files', 'LiquidCalibration.mat');
+    SavePath = fullfile(BpodSystem.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat');
     LiquidCal = BpodSystem.PluginObjects.LiquidCal.CalData;
     LiquidCal(1).LastDateModified = now;
     save(SavePath, 'LiquidCal');
@@ -696,11 +696,11 @@ function AddCalMeasurements(varargin)
     % LiquidCalibrationManager to reflect the new pending measurements vector
     
     % Save file
-    TestSavePath = fullfile(BpodSystem.BpodPath, 'Calibration Files');
+    TestSavePath = fullfile(BpodSystem.BpodUserPath, 'Calibration Files');
     if exist(TestSavePath) ~= 7
         mkdir(TestSavePath);
     end
-    SavePath = fullfile(BpodSystem.BpodPath, 'Calibration Files', 'LiquidCalibration.mat');
+    SavePath = fullfile(BpodSystem.BpodUserPath, 'Calibration Files', 'LiquidCalibration.mat');
     LiquidCal = BpodSystem.PluginObjects.LiquidCal.CalData;
     LiquidCal(1).LastDateModified = now;
     save(SavePath, 'LiquidCal');
diff --git a/Functions/Plugins/Pipeline/Pipeline.m b/Functions/Plugins/Pipeline/Pipeline.m
index dc89cda..74886cd 100644
--- a/Functions/Plugins/Pipeline/Pipeline.m
+++ b/Functions/Plugins/Pipeline/Pipeline.m
@@ -61,7 +61,7 @@
         catch
         end
         FormattedDate = [datestr(now, 3) datestr(now, 7) '_' datestr(now, 10)];
-        DataFolder = fullfile(BpodSystem.BpodPath,'Data',currentAnimalName,BpodSystem.CurrentProtocolName, 'Session Data');
+        DataFolder = fullfile(BpodSystem.BpodUserPath,'Data',currentAnimalName,BpodSystem.CurrentProtocolName, 'Session Data');
         Candidates = dir(DataFolder);
         nSessionsToday = 0;
         for x = 1:length(Candidates)
@@ -71,7 +71,7 @@
                 end
             end
         end
-        DataPath = fullfile(BpodSystem.BpodPath,'Data',currentAnimalName,BpodSystem.CurrentProtocolName,'Session Data',[BpodSystem.GUIData.SubjectName '_' BpodSystem.CurrentProtocolName '_' FormattedDate '_Session' num2str(nSessionsToday+1) '.mat']);
+        DataPath = fullfile(BpodSystem.BpodUserPath,'Data',currentAnimalName,BpodSystem.CurrentProtocolName,'Session Data',[BpodSystem.GUIData.SubjectName '_' BpodSystem.CurrentProtocolName '_' FormattedDate '_Session' num2str(nSessionsToday+1) '.mat']);
         BpodSystem.DataPath = DataPath;
         BpodSystem.Data = struct;
         BpodSystem.Data.TrialTypes = [];
diff --git a/Functions/Plugins/RechiaOlfactometer/OlfactometerConfig.m b/Functions/Plugins/RechiaOlfactometer/OlfactometerConfig.m
index 079621f..737a98d 100644
--- a/Functions/Plugins/RechiaOlfactometer/OlfactometerConfig.m
+++ b/Functions/Plugins/RechiaOlfactometer/OlfactometerConfig.m
@@ -51,10 +51,13 @@ function OlfactometerConfig_OpeningFcn(hObject, eventdata, handles, varargin)
 % eventdata  reserved - to be defined in a future version of MATLAB
 % handles    structure with handles and user data (see GUIDATA)
 % varargin   command line arguments to OlfactometerConfig (see VARARGIN)
+global BpodSystem
 ha = axes('units','normalized', 'position',[0 0 1 1]);
 uistack(ha,'bottom');
 BG = imread('OlfControlPanel.bmp');
 image(BG); axis off;
+% FS NOTE: This function not updated to utilize BpodUserPath
+% 
 loadBpodPath;
 if exist(fullfile(BpodPath,'Bpod System Files','OlfConfig.mat'))
     load OlfConfig

From 9b45e63608478d3deffdc847ed7b637e0fa4c365 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Tue, 6 Sep 2016 19:38:02 -0400
Subject: [PATCH 14/30] adds mat file containing string to BpodUserPath in Bpod
 home directory. uses string for BpodUserPath. default is home directory.

---
 Functions/Internal Functions/BpodObject.m | 16 +++++++++++-----
 1 file changed, 11 insertions(+), 5 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index 5093815..426fd6e 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -118,13 +118,19 @@
             
             obj.HostOS = system_dependent('getos');
             obj.BpodPath = BpodPath;
-%% FS MOD
-            if ispc 
-                import java.lang.*;
-                obj.BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+            %% FS MOD
+            if exist(fullfile(obj.BpodPath,'BpodUserPath.mat'),'file')==2
+                load(fullfile(obj.BpodPath,'BpodUserPath.mat'));
             else
-                obj.BpodUserPath = fullfile('~', 'BpodUser');
+                if ispc
+                    import java.lang.*;
+                    BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+                else
+                    BpodUserPath = fullfile('~', 'BpodUser');
                 end
+                save(fullfile(obj.BpodPath,'BpodUserPath.mat'),'BpodUserPath')
+            end
+            obj.BpodUserPath = BpodUserPath;
             if ~isdir(obj.BpodUserPath)
                 mkdir(obj.BpodUserPath);
                 warning(['Bpod user directory not found. Directory created at ' obj.BpodUserPath]);

From 0b27cf37c7a37b4019a2650be6406cef9b3b3e11 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Wed, 7 Sep 2016 11:40:43 -0400
Subject: [PATCH 15/30] changed mat file to txt file

---
 Functions/Internal Functions/BpodObject.m | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index 426fd6e..d982134 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -119,8 +119,10 @@
             obj.HostOS = system_dependent('getos');
             obj.BpodPath = BpodPath;
             %% FS MOD
-            if exist(fullfile(obj.BpodPath,'BpodUserPath.mat'),'file')==2
-                load(fullfile(obj.BpodPath,'BpodUserPath.mat'));
+            if exist(fullfile(obj.BpodPath,'BpodUserPath.txt'),'file') == 2
+                UserFile = fopen(fullfile(obj.BpodPath,'BpodUserPath.txt'),'r');
+                BpodUserPath = fscanf(UserFile,'%s');
+                fclose(UserFile);
             else
                 if ispc
                     import java.lang.*;
@@ -128,7 +130,9 @@
                 else
                     BpodUserPath = fullfile('~', 'BpodUser');
                 end
-                save(fullfile(obj.BpodPath,'BpodUserPath.mat'),'BpodUserPath')
+                UserFile = fopen(fullfile(obj.BpodPath,'BpodUserPath.txt'),'w');
+                fprintf(UserFile,'%s',BpodUserPath);
+                fclose(UserFile);
             end
             obj.BpodUserPath = BpodUserPath;
             if ~isdir(obj.BpodUserPath)

From a847ac661e1f3b85765d1905d422b42181ed6fd1 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Thu, 15 Sep 2016 20:36:37 -0400
Subject: [PATCH 16/30] Added menu bar to Parameter GUI allowing to save
 current TaskParameters to current settings file (save) or to new settings
 file (save as).

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 6abf061..0c026e1 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -71,6 +71,9 @@
         ParamNum = 1;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
         BpodSystem.GUIHandles.ParameterGUI.Tabs.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
+        Menu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label','File');
+        MenuSave = uimenu(Menu,'Label','Save','Callback',{@MenuSave_Callback});
+        MenuSaveAs = uimenu(Menu,'Label','Save as...','Callback',{@MenuSaveAs_Callback});
         for t = 1:nTabs
             VPos = 10;
             HPos = 10;
@@ -254,3 +257,19 @@
     error('ParameterGUI must be called with a valid op code: ''init'' or ''sync''');
 end
 varargout{1} = Params;
+
+function MenuSave_Callback(hObject, eventdata, handles)
+global BpodSystem
+global TaskParameters
+TaskParameters = BpodParameterGUI('sync', TaskParameters);
+ProtocolSettings = TaskParameters;
+save(BpodSystem.SettingsPath,'ProtocolSettings')
+
+function MenuSaveAs_Callback(hObject, eventdata, handles)
+global BpodSystem
+global TaskParameters
+TaskParameters = BpodParameterGUI('sync', TaskParameters);
+ProtocolSettings = TaskParameters;
+[file,path] = uiputfile('*.mat','Select a Bpod ProtocolSettings file.',BpodSystem.SettingsPath);
+save(fullfile(path,file),'ProtocolSettings')
+

From 284ca61b622764af6009d7cb3e9600ce6635b4bc Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Thu, 15 Sep 2016 20:48:40 -0400
Subject: [PATCH 17/30] prevents protocol from crashing when you hit "cancel"
 while saving.

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 0c026e1..b27b939 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -271,5 +271,7 @@ function MenuSaveAs_Callback(hObject, eventdata, handles)
 TaskParameters = BpodParameterGUI('sync', TaskParameters);
 ProtocolSettings = TaskParameters;
 [file,path] = uiputfile('*.mat','Select a Bpod ProtocolSettings file.',BpodSystem.SettingsPath);
-save(fullfile(path,file),'ProtocolSettings')
+if file>0
+    save(fullfile(path,file),'ProtocolSettings')
+end
 

From 55a970962247b920ec31c6f2d11103e4ab433753 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Fri, 16 Sep 2016 13:35:17 -0400
Subject: [PATCH 18/30] Solves sync-issue by adding a 'get' option to
 BpodParameterGUI. Shows current settings, subject, protocol.

---
 .../Plugins/ParameterGUI/BpodParameterGUI.m   | 57 +++++++++++++++----
 1 file changed, 46 insertions(+), 11 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index b27b939..2ede30c 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -71,9 +71,15 @@
         ParamNum = 1;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
         BpodSystem.GUIHandles.ParameterGUI.Tabs.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
-        Menu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label','File');
-        MenuSave = uimenu(Menu,'Label','Save','Callback',{@MenuSave_Callback});
-        MenuSaveAs = uimenu(Menu,'Label','Save as...','Callback',{@MenuSaveAs_Callback});
+        SettingsMenu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label','Settings:');
+        [~, SettingsFile] = fileparts(BpodSystem.SettingsPath);
+        SettingsNameMenu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',strcat(SettingsFile,'.'));
+        uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',['Protocol: ', BpodSystem.CurrentProtocolName,'.']);
+        [subpath1, ~] = fileparts(BpodSystem.DataPath); [subpath2, ~] = fileparts(subpath1); [subpath3, ~] = fileparts(subpath2);
+        [~,  subject] = fileparts(subpath3);
+        uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',['Subject: ', subject,'.']);
+        SettingsMenuSave = uimenu(SettingsMenu,'Label','Save','Callback',{@SettingsMenuSave_Callback});
+        SettingsMenuSaveAs = uimenu(SettingsMenu,'Label','Save as...','Callback',{@SettingsMenuSaveAs_Callback,SettingsNameMenu});
         for t = 1:nTabs
             VPos = 10;
             HPos = 10;
@@ -229,14 +235,14 @@
                     elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
                         set(ThisParamHandle, 'Value', GUIParam);
                     end
-                case 6
+                case 6 %Pushbutton
                     GUIParam = get(ThisParamHandle, 'Value');
                     if GUIParam ~= ThisParamLastValue
                         Params.GUI.(ThisParamName) = GUIParam;
                     elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
                         set(ThisParamHandle, 'Value', GUIParam);
                     end
-                case 7
+                case 7 %Table
                     GUIParam = ThisParamHandle.Data;
                     columnNames = fieldnames(Params.GUI.(ThisParamName));
                     argData = [];
@@ -253,25 +259,54 @@
             end
             BpodSystem.GUIData.ParameterGUI.LastParamValues{p} = GUIParam;
         end
+    case 'get'
+        ParamNames = BpodSystem.GUIData.ParameterGUI.ParamNames;
+        nParams = BpodSystem.GUIData.ParameterGUI.nParams;
+        for p = 1:nParams
+            ThisParamName = ParamNames{p};
+            ThisParamStyle = BpodSystem.GUIData.ParameterGUI.Styles(p);
+            ThisParamHandle = BpodSystem.GUIHandles.ParameterGUI.Params{p};
+            switch ThisParamStyle
+                case 1 % Edit
+                    GUIParam = str2double(get(ThisParamHandle, 'String'));
+                    Params.GUI.(ThisParamName) = GUIParam;
+                case 2 % Text
+                    GUIParam = get(ThisParamHandle, 'String');
+                    Params.GUI.(ThisParamName) = GUIParam;
+                case 3 % Checkbox
+                    GUIParam = get(ThisParamHandle, 'Value');
+                    Params.GUI.(ThisParamName) = GUIParam;
+                case 4 % Popupmenu
+                    GUIParam = get(ThisParamHandle, 'Value');
+                    Params.GUI.(ThisParamName) = GUIParam;
+                case 6 % Pushbutton
+                    GUIParam = get(ThisParamHandle, 'Value');
+                    Params.GUI.(ThisParamName) = GUIParam;
+                case 7 % Table
+                    GUIParam = ThisParamHandle.Data;
+                    Params.GUI.(ThisParamName) = GUIParam;
+            end
+        end
     otherwise
     error('ParameterGUI must be called with a valid op code: ''init'' or ''sync''');
 end
 varargout{1} = Params;
 
-function MenuSave_Callback(hObject, eventdata, handles)
+function SettingsMenuSave_Callback(~, ~, ~)
 global BpodSystem
 global TaskParameters
-TaskParameters = BpodParameterGUI('sync', TaskParameters);
-ProtocolSettings = TaskParameters;
+ProtocolSettings = BpodParameterGUI('sync',TaskParameters);
 save(BpodSystem.SettingsPath,'ProtocolSettings')
 
-function MenuSaveAs_Callback(hObject, eventdata, handles)
+function SettingsMenuSaveAs_Callback(~, ~, SettingsMenuHandle)
 global BpodSystem
 global TaskParameters
-TaskParameters = BpodParameterGUI('sync', TaskParameters);
-ProtocolSettings = TaskParameters;
+ProtocolSettings = BpodParameterGUI('get',TaskParameters);
 [file,path] = uiputfile('*.mat','Select a Bpod ProtocolSettings file.',BpodSystem.SettingsPath);
 if file>0
     save(fullfile(path,file),'ProtocolSettings')
+    BpodSystem.SettingsPath = fullfile(path,file);
+    [~,SettingsName] = fileparts(file);
+    set(SettingsMenuHandle,'Label',strcat(SettingsName,'.'));
 end
 

From 5c29a52af149c75e4caf984dccf471d98b24971d Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Mon, 19 Sep 2016 14:05:12 -0400
Subject: [PATCH 19/30] more consistent appearance of menus

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 2ede30c..fd1fcd6 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -71,15 +71,14 @@
         ParamNum = 1;
         BpodSystem.ProtocolFigures.ParameterGUI = figure('Position', [50 50 450 GUIHeight],'name','Parameter GUI','numbertitle','off', 'MenuBar', 'none', 'Resize', 'on');
         BpodSystem.GUIHandles.ParameterGUI.Tabs.TabGroup = uitabgroup(BpodSystem.ProtocolFigures.ParameterGUI);
-        SettingsMenu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label','Settings:');
         [~, SettingsFile] = fileparts(BpodSystem.SettingsPath);
-        SettingsNameMenu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',strcat(SettingsFile,'.'));
+        SettingsMenu = uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',['Settings: ',SettingsFile,'.']);
         uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',['Protocol: ', BpodSystem.CurrentProtocolName,'.']);
         [subpath1, ~] = fileparts(BpodSystem.DataPath); [subpath2, ~] = fileparts(subpath1); [subpath3, ~] = fileparts(subpath2);
         [~,  subject] = fileparts(subpath3);
         uimenu(BpodSystem.ProtocolFigures.ParameterGUI,'Label',['Subject: ', subject,'.']);
-        SettingsMenuSave = uimenu(SettingsMenu,'Label','Save','Callback',{@SettingsMenuSave_Callback});
-        SettingsMenuSaveAs = uimenu(SettingsMenu,'Label','Save as...','Callback',{@SettingsMenuSaveAs_Callback,SettingsNameMenu});
+        uimenu(SettingsMenu,'Label','Save','Callback',{@SettingsMenuSave_Callback});
+        uimenu(SettingsMenu,'Label','Save as...','Callback',{@SettingsMenuSaveAs_Callback,SettingsMenu});
         for t = 1:nTabs
             VPos = 10;
             HPos = 10;
@@ -307,6 +306,6 @@ function SettingsMenuSaveAs_Callback(~, ~, SettingsMenuHandle)
     save(fullfile(path,file),'ProtocolSettings')
     BpodSystem.SettingsPath = fullfile(path,file);
     [~,SettingsName] = fileparts(file);
-    set(SettingsMenuHandle,'Label',strcat(SettingsName,'.'));
+    set(SettingsMenuHandle,'Label',['Settings: ',SettingsName,'.']);
 end
 

From fb79a586cdf3b6854713ddc5553ee31ac14b0c07 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Wed, 21 Sep 2016 17:44:33 -0400
Subject: [PATCH 20/30] corrected save menu callback function.

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index fd1fcd6..09f3672 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -294,7 +294,7 @@
 function SettingsMenuSave_Callback(~, ~, ~)
 global BpodSystem
 global TaskParameters
-ProtocolSettings = BpodParameterGUI('sync',TaskParameters);
+ProtocolSettings = BpodParameterGUI('get',TaskParameters);
 save(BpodSystem.SettingsPath,'ProtocolSettings')
 
 function SettingsMenuSaveAs_Callback(~, ~, SettingsMenuHandle)

From 7a9319122d8536e8be49d345a4a33d7c6fa8b680 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Thu, 22 Sep 2016 12:03:05 -0400
Subject: [PATCH 21/30] corrects error in 'get'.

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index 09f3672..b08c8eb 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -271,6 +271,7 @@
                     Params.GUI.(ThisParamName) = GUIParam;
                 case 2 % Text
                     GUIParam = get(ThisParamHandle, 'String');
+                    GUIParam = str2double(GUIParam);  
                     Params.GUI.(ThisParamName) = GUIParam;
                 case 3 % Checkbox
                     GUIParam = get(ThisParamHandle, 'Value');
@@ -283,7 +284,10 @@
                     Params.GUI.(ThisParamName) = GUIParam;
                 case 7 % Table
                     GUIParam = ThisParamHandle.Data;
-                    Params.GUI.(ThisParamName) = GUIParam;
+                    columnNames = fieldnames(Params.GUI.(ThisParamName));
+                    for iColumn = 1:numel(columnNames)
+                         Params.GUI.(ThisParamName).(columnNames{iColumn}) = GUIParam(:,iColumn);
+                    end
             end
         end
     otherwise

From 4671f5c4ba4b2ba3c309a2efd9fff7614282e4d0 Mon Sep 17 00:00:00 2001
From: elsie <egibsonCSHL@caprock.cshl.edu>
Date: Fri, 23 Sep 2016 11:48:22 -0400
Subject: [PATCH 22/30] Replaced with latest port breakout board design from
 Sanworks (LED adjust, not IR adjust)

---
 .../MouseBox_PortBreakout_r1 GERBER.zip       |  Bin 21731 -> 0 bytes
 .../MouseBox_PortBreakout_r1.brd              |  603 ----
 .../MouseBox_PortBreakout_r1.sch              | 2443 -----------------
 .../MouseBox_PortBreakout_r1.zip              |  Bin 0 -> 24143 bytes
 4 files changed, 3046 deletions(-)
 delete mode 100644 CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1 GERBER.zip
 delete mode 100644 CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.brd
 delete mode 100644 CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.sch
 create mode 100644 CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.zip

diff --git a/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1 GERBER.zip b/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1 GERBER.zip
deleted file mode 100644
index fe0efbdf98b00eb36fe9e8437e10d4f3de8e67c1..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

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index c89198a..0000000
--- a/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.brd
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-You are welcome to use this library for commercial purposes. For attribution, we ask that when you begin to sell your device using our footprint, you email us with a link to the product being sold. We want bragging rights that we helped (in a very small part) to create your 8th world wonder. We would like the opportunity to feature your device on our homepage.</description>
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-<wire x1="2.54" y1="0" x2="2.794" y2="0" width="0.2032" layer="21"/>
-<wire x1="-2.54" y1="0" x2="-2.794" y2="0" width="0.2032" layer="21"/>
-<pad name="P$1" x="-3.81" y="0" drill="0.9" diameter="1.8796"/>
-<pad name="P$2" x="3.81" y="0" drill="0.9" diameter="1.8796"/>
-<text x="-2.54" y="1.27" size="0.4064" layer="25" font="vector">&gt;Name</text>
-<text x="-2.032" y="-0.381" size="1.016" layer="21" font="vector" ratio="15">&gt;Value</text>
-</package>
-</packages>
-</library>
-</libraries>
-<attributes>
-</attributes>
-<variantdefs>
-</variantdefs>
-<classes>
-<class number="0" name="default" width="0" drill="0">
-</class>
-</classes>
-<designrules name="SeeedStudio_2layer_DRU_no_angle_20140221 *">
-<description language="de">&lt;b&gt;EAGLE Design Rules&lt;/b&gt;
-&lt;p&gt;
-Die Standard-Design-Rules sind so gewählt, dass sie für 
-die meisten Anwendungen passen. Sollte ihre Platine 
-besondere Anforderungen haben, treffen Sie die erforderlichen
-Einstellungen hier und speichern die Design Rules unter 
-einem neuen Namen ab.</description>
-<description language="en">&lt;b&gt;EAGLE Design Rules&lt;/b&gt;
-&lt;p&gt;
-The default Design Rules have been set to cover
-a wide range of applications. Your particular design
-may have different requirements, so please make the
-necessary adjustments and save your customized
-design rules under a new name.</description>
-<description language="zh">&lt;b&gt;Seeed Studio EAGLE Design Rules&lt;/b&gt;
-</description>
-<param name="layerSetup" value="(1*16)"/>
-<param name="mtCopper" value="0.035mm 0.0175mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.035mm 0.0175mm 0.035mm"/>
-<param name="mtIsolate" value="1.5mm 1.1mm 0.2mm 0.15mm 0.2mm 0.15mm 0.2mm 0.15mm 0.2mm 0.15mm 0.2mm 0.15mm 0.2mm 0.15mm 0.2mm"/>
-<param name="mdWireWire" value="16mil"/>
-<param name="mdWirePad" value="16mil"/>
-<param name="mdWireVia" value="16mil"/>
-<param name="mdPadPad" value="6mil"/>
-<param name="mdPadVia" value="6mil"/>
-<param name="mdViaVia" value="6mil"/>
-<param name="mdSmdPad" value="0mil"/>
-<param name="mdSmdVia" value="0mil"/>
-<param name="mdSmdSmd" value="0mil"/>
-<param name="mdViaViaSameLayer" value="8mil"/>
-<param name="mnLayersViaInSmd" value="2"/>
-<param name="mdCopperDimension" value="10mil"/>
-<param name="mdDrill" value="10mil"/>
-<param name="mdSmdStop" value="0mil"/>
-<param name="msWidth" value="6mil"/>
-<param name="msDrill" value="12mil"/>
-<param name="msMicroVia" value="12mil"/>
-<param name="msBlindViaRatio" value="0.5"/>
-<param name="rvPadTop" value="0.25"/>
-<param name="rvPadInner" value="0.25"/>
-<param name="rvPadBottom" value="0.25"/>
-<param name="rvViaOuter" value="0.25"/>
-<param name="rvViaInner" value="0.25"/>
-<param name="rvMicroViaOuter" value="0.25"/>
-<param name="rvMicroViaInner" value="0.25"/>
-<param name="rlMinPadTop" value="10mil"/>
-<param name="rlMaxPadTop" value="20mil"/>
-<param name="rlMinPadInner" value="10mil"/>
-<param name="rlMaxPadInner" value="20mil"/>
-<param name="rlMinPadBottom" value="10mil"/>
-<param name="rlMaxPadBottom" value="20mil"/>
-<param name="rlMinViaOuter" value="6mil"/>
-<param name="rlMaxViaOuter" value="20mil"/>
-<param name="rlMinViaInner" value="6mil"/>
-<param name="rlMaxViaInner" value="20mil"/>
-<param name="rlMinMicroViaOuter" value="4mil"/>
-<param name="rlMaxMicroViaOuter" value="20mil"/>
-<param name="rlMinMicroViaInner" value="4mil"/>
-<param name="rlMaxMicroViaInner" value="20mil"/>
-<param name="psTop" value="-1"/>
-<param name="psBottom" value="-1"/>
-<param name="psFirst" value="0"/>
-<param name="psElongationLong" value="100"/>
-<param name="psElongationOffset" value="100"/>
-<param name="mvStopFrame" value="1"/>
-<param name="mvCreamFrame" value="0"/>
-<param name="mlMinStopFrame" value="2mil"/>
-<param name="mlMaxStopFrame" value="2mil"/>
-<param name="mlMinCreamFrame" value="0mil"/>
-<param name="mlMaxCreamFrame" value="0mil"/>
-<param name="mlViaStopLimit" value="100mil"/>
-<param name="srRoundness" value="0"/>
-<param name="srMinRoundness" value="0mil"/>
-<param name="srMaxRoundness" value="0mil"/>
-<param name="slThermalIsolate" value="10mil"/>
-<param name="slThermalsForVias" value="0"/>
-<param name="dpMaxLengthDifference" value="10mm"/>
-<param name="dpGapFactor" value="2.5"/>
-<param name="checkGrid" value="0"/>
-<param name="checkAngle" value="0"/>
-<param name="checkFont" value="1"/>
-<param name="checkRestrict" value="0"/>
-<param name="useDiameter" value="13"/>
-<param name="maxErrors" value="50"/>
-</designrules>
-<autorouter>
-<pass name="Default">
-<param name="RoutingGrid" value="50mil"/>
-<param name="tpViaShape" value="round"/>
-<param name="PrefDir.1" value="|"/>
-<param name="PrefDir.2" value="0"/>
-<param name="PrefDir.3" value="0"/>
-<param name="PrefDir.4" value="0"/>
-<param name="PrefDir.5" value="0"/>
-<param name="PrefDir.6" value="0"/>
-<param name="PrefDir.7" value="0"/>
-<param name="PrefDir.8" value="0"/>
-<param name="PrefDir.9" value="0"/>
-<param name="PrefDir.10" value="0"/>
-<param name="PrefDir.11" value="0"/>
-<param name="PrefDir.12" value="0"/>
-<param name="PrefDir.13" value="0"/>
-<param name="PrefDir.14" value="0"/>
-<param name="PrefDir.15" value="0"/>
-<param name="PrefDir.16" value="-"/>
-<param name="cfVia" value="8"/>
-<param name="cfNonPref" value="5"/>
-<param name="cfChangeDir" value="2"/>
-<param name="cfOrthStep" value="2"/>
-<param name="cfDiagStep" value="3"/>
-<param name="cfExtdStep" value="0"/>
-<param name="cfBonusStep" value="1"/>
-<param name="cfMalusStep" value="1"/>
-<param name="cfPadImpact" value="4"/>
-<param name="cfSmdImpact" value="4"/>
-<param name="cfBusImpact" value="0"/>
-<param name="cfHugging" value="3"/>
-<param name="cfAvoid" value="4"/>
-<param name="cfPolygon" value="10"/>
-<param name="cfBase.1" value="0"/>
-<param name="cfBase.2" value="1"/>
-<param name="cfBase.3" value="1"/>
-<param name="cfBase.4" value="1"/>
-<param name="cfBase.5" value="1"/>
-<param name="cfBase.6" value="1"/>
-<param name="cfBase.7" value="1"/>
-<param name="cfBase.8" value="1"/>
-<param name="cfBase.9" value="1"/>
-<param name="cfBase.10" value="1"/>
-<param name="cfBase.11" value="1"/>
-<param name="cfBase.12" value="1"/>
-<param name="cfBase.13" value="1"/>
-<param name="cfBase.14" value="1"/>
-<param name="cfBase.15" value="1"/>
-<param name="cfBase.16" value="0"/>
-<param name="mnVias" value="20"/>
-<param name="mnSegments" value="9999"/>
-<param name="mnExtdSteps" value="9999"/>
-<param name="mnRipupLevel" value="10"/>
-<param name="mnRipupSteps" value="100"/>
-<param name="mnRipupTotal" value="100"/>
-</pass>
-<pass name="Follow-me" refer="Default" active="yes">
-</pass>
-<pass name="Busses" refer="Default" active="yes">
-<param name="cfNonPref" value="4"/>
-<param name="cfBusImpact" value="4"/>
-<param name="cfHugging" value="0"/>
-<param name="mnVias" value="0"/>
-</pass>
-<pass name="Route" refer="Default" active="yes">
-</pass>
-<pass name="Optimize1" refer="Default" active="yes">
-<param name="cfVia" value="99"/>
-<param name="cfExtdStep" value="10"/>
-<param name="cfHugging" value="1"/>
-<param name="mnExtdSteps" value="1"/>
-<param name="mnRipupLevel" value="0"/>
-</pass>
-<pass name="Optimize2" refer="Optimize1" active="yes">
-<param name="cfNonPref" value="0"/>
-<param name="cfChangeDir" value="6"/>
-<param name="cfExtdStep" value="0"/>
-<param name="cfBonusStep" value="2"/>
-<param name="cfMalusStep" value="2"/>
-<param name="cfPadImpact" value="2"/>
-<param name="cfSmdImpact" value="2"/>
-<param name="cfHugging" value="0"/>
-</pass>
-<pass name="Optimize3" refer="Optimize2" active="yes">
-<param name="cfChangeDir" value="8"/>
-<param name="cfPadImpact" value="0"/>
-<param name="cfSmdImpact" value="0"/>
-</pass>
-<pass name="Optimize4" refer="Optimize3" active="yes">
-<param name="cfChangeDir" value="25"/>
-</pass>
-</autorouter>
-<elements>
-<element name="U$1" library="SparkFun" package="RJ45-8" value="RJ45-8PTH" x="34.036" y="53.594" rot="R180"/>
-<element name="JP1" library="SparkFun" package="SCREWTERMINAL-3.5MM-6" value="" x="21.59" y="26.924"/>
-<element name="VALVE" library="SparkFun" package="SCREWTERMINAL-3.5MM-2_LOCK" value="" x="23.622" y="46.99" smashed="yes" rot="R180">
-<attribute name="NAME" x="19.304" y="41.656" size="1.27" layer="25" font="vector"/>
-<attribute name="VALUE" x="24.892" y="45.72" size="0.4064" layer="27" rot="R180"/>
-</element>
-<element name="R4" library="bourns" package="3362R" value="" x="31.242" y="38.1" smashed="yes" rot="R90">
-<attribute name="VALUE" x="36.449" y="34.8234" size="1.27" layer="27" ratio="10" rot="R90"/>
-</element>
-<element name="R1" library="SparkFun-Resistors" package="AXIAL-0.3" value="100" x="27.94" y="32.512" rot="R180"/>
-<element name="R2" library="SparkFun-Resistors" package="AXIAL-0.3" value="150" x="36.576" y="37.084" rot="R270"/>
-<element name="R3" library="SparkFun-Resistors" package="AXIAL-0.3" value="15K" x="40.64" y="37.084" rot="R90"/>
-</elements>
-<signals>
-<signal name="N$1">
-<contactref element="U$1" pad="1"/>
-<contactref element="JP1" pad="6"/>
-<contactref element="R3" pad="P$2"/>
-<wire x1="40.64" y1="40.894" x2="40.64" y2="42.037" width="0.508" layer="16"/>
-<wire x1="40.64" y1="42.037" x2="38.481" y2="47.244" width="0.508" layer="16"/>
-<wire x1="39.09" y1="26.924" x2="38.582" y2="26.696" width="0.508" layer="1"/>
-<wire x1="38.582" y1="26.696" x2="38.608" y2="31.496" width="0.508" layer="1"/>
-<wire x1="38.608" y1="31.496" x2="38.608" y2="38.862" width="0.508" layer="1"/>
-<wire x1="38.608" y1="38.862" x2="40.64" y2="40.894" width="0.508" layer="1"/>
-</signal>
-<signal name="N$2">
-<contactref element="U$1" pad="4"/>
-<contactref element="R4" pad="2"/>
-<contactref element="R3" pad="P$1"/>
-<wire x1="33.782" y1="38.1" x2="34.29" y2="39.624" width="0.508" layer="16"/>
-<wire x1="34.29" y1="39.624" x2="34.671" y2="40.513" width="0.508" layer="16"/>
-<wire x1="34.671" y1="40.513" x2="34.671" y2="44.704" width="0.508" layer="16"/>
-<wire x1="40.64" y1="33.274" x2="40.64" y2="34.036" width="0.508" layer="16"/>
-<wire x1="40.64" y1="34.036" x2="36.576" y2="38.1" width="0.508" layer="16"/>
-<wire x1="36.576" y1="38.1" x2="35.052" y2="39.37" width="0.508" layer="16"/>
-<wire x1="35.052" y1="39.37" x2="34.29" y2="39.624" width="0.508" layer="16"/>
-</signal>
-<signal name="N$3">
-<contactref element="JP1" pad="2"/>
-<contactref element="R1" pad="P$2"/>
-<wire x1="25.09" y1="26.924" x2="24.13" y2="27.884" width="0.508" layer="16"/>
-<wire x1="24.13" y1="27.884" x2="24.13" y2="32.512" width="0.508" layer="16"/>
-</signal>
-<signal name="N$5">
-<contactref element="U$1" pad="6"/>
-<contactref element="VALVE" pad="2"/>
-<wire x1="32.131" y1="44.704" x2="32.131" y2="44.069" width="0.508" layer="1"/>
-<wire x1="32.131" y1="44.069" x2="30.48" y2="42.418" width="0.508" layer="1"/>
-<wire x1="30.48" y1="42.418" x2="24.5162" y2="42.418" width="0.508" layer="1"/>
-<wire x1="24.5162" y1="42.418" x2="19.9442" y2="46.99" width="0.508" layer="1"/>
-</signal>
-<signal name="N$6">
-<contactref element="U$1" pad="7"/>
-<contactref element="VALVE" pad="1"/>
-<wire x1="30.861" y1="47.244" x2="23.7998" y2="47.244" width="0.508" layer="1"/>
-<wire x1="23.7998" y1="47.244" x2="23.7998" y2="46.99" width="0.508" layer="1"/>
-</signal>
-<signal name="N$7">
-<contactref element="JP1" pad="4"/>
-<contactref element="R2" pad="P$2"/>
-<wire x1="32.09" y1="26.924" x2="35.306" y2="30.14" width="0.508" layer="16"/>
-<wire x1="35.306" y1="30.14" x2="36.576" y2="33.274" width="0.508" layer="16"/>
-</signal>
-<signal name="N$8">
-<contactref element="U$1" pad="3"/>
-<contactref element="R2" pad="P$1"/>
-<wire x1="35.941" y1="47.244" x2="35.941" y2="48.641" width="0.508" layer="1"/>
-<wire x1="35.941" y1="48.641" x2="36.83" y2="49.53" width="0.508" layer="1"/>
-<wire x1="36.83" y1="49.53" x2="39.624" y2="49.53" width="0.508" layer="1"/>
-<wire x1="39.624" y1="49.53" x2="40.64" y2="48.514" width="0.508" layer="1"/>
-<wire x1="40.64" y1="48.514" x2="40.64" y2="44.958" width="0.508" layer="1"/>
-<wire x1="40.64" y1="44.958" x2="36.576" y2="40.894" width="0.508" layer="1"/>
-</signal>
-<signal name="N$9">
-<contactref element="R4" pad="1"/>
-<contactref element="R1" pad="P$1"/>
-<wire x1="31.75" y1="32.512" x2="31.242" y2="35.56" width="0.508" layer="16"/>
-</signal>
-<signal name="GND">
-<polygon width="0.508" layer="16">
-<vertex x="18.796" y="22.352"/>
-<vertex x="41.656" y="22.352"/>
-<vertex x="41.656" y="56.642"/>
-<vertex x="18.796" y="56.642"/>
-</polygon>
-<contactref element="U$1" pad="5"/>
-<contactref element="JP1" pad="1"/>
-<contactref element="JP1" pad="3"/>
-<contactref element="JP1" pad="5"/>
-</signal>
-</signals>
-</board>
-</drawing>
-</eagle>
diff --git a/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.sch b/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.sch
deleted file mode 100644
index bc6d2c4..0000000
--- a/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.sch
+++ /dev/null
@@ -1,2443 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!DOCTYPE eagle SYSTEM "eagle.dtd">
-<eagle version="6.3">
-<drawing>
-<settings>
-<setting alwaysvectorfont="yes"/>
-<setting verticaltext="up"/>
-</settings>
-<grid distance="0.1" unitdist="inch" unit="inch" style="lines" multiple="1" display="no" altdistance="0.01" altunitdist="inch" altunit="inch"/>
-<layers>
-<layer number="1" name="Top" color="4" fill="1" visible="no" active="no"/>
-<layer number="2" name="Route2" color="1" fill="3" visible="no" active="no"/>
-<layer number="3" name="Route3" color="4" fill="3" visible="no" active="no"/>
-<layer number="4" name="Route4" color="1" fill="4" visible="no" active="no"/>
-<layer number="5" name="Route5" color="4" fill="4" visible="no" active="no"/>
-<layer number="6" name="Route6" color="1" fill="8" visible="no" active="no"/>
-<layer number="7" name="Route7" color="4" fill="8" visible="no" active="no"/>
-<layer number="8" name="Route8" color="1" fill="2" visible="no" active="no"/>
-<layer number="9" name="Route9" color="4" fill="2" visible="no" active="no"/>
-<layer number="10" name="Route10" color="1" fill="7" visible="no" active="no"/>
-<layer number="11" name="Route11" color="4" fill="7" visible="no" active="no"/>
-<layer number="12" name="Route12" color="1" fill="5" visible="no" active="no"/>
-<layer number="13" name="Route13" color="4" fill="5" visible="no" active="no"/>
-<layer number="14" name="Route14" color="1" fill="6" visible="no" active="no"/>
-<layer number="15" name="Route15" color="4" fill="6" visible="no" active="no"/>
-<layer number="16" name="Bottom" color="1" fill="1" visible="no" active="no"/>
-<layer number="17" name="Pads" color="2" fill="1" visible="no" active="no"/>
-<layer number="18" name="Vias" color="2" fill="1" visible="no" active="no"/>
-<layer number="19" name="Unrouted" color="6" fill="1" visible="no" active="no"/>
-<layer number="20" name="Dimension" color="7" fill="1" visible="no" active="no"/>
-<layer number="21" name="tPlace" color="16" fill="1" visible="no" active="no"/>
-<layer number="22" name="bPlace" color="14" fill="1" visible="no" active="no"/>
-<layer number="23" name="tOrigins" color="15" fill="1" visible="no" active="no"/>
-<layer number="24" name="bOrigins" color="15" fill="1" visible="no" active="no"/>
-<layer number="25" name="tNames" color="7" fill="1" visible="no" active="no"/>
-<layer number="26" name="bNames" color="7" fill="1" visible="no" active="no"/>
-<layer number="27" name="tValues" color="7" fill="1" visible="no" active="no"/>
-<layer number="28" name="bValues" color="7" fill="1" visible="no" active="no"/>
-<layer number="29" name="tStop" color="7" fill="3" visible="no" active="no"/>
-<layer number="30" name="bStop" color="7" fill="6" visible="no" active="no"/>
-<layer number="31" name="tCream" color="11" fill="4" visible="no" active="no"/>
-<layer number="32" name="bCream" color="7" fill="5" visible="no" active="no"/>
-<layer number="33" name="tFinish" color="6" fill="3" visible="no" active="no"/>
-<layer number="34" name="bFinish" color="6" fill="6" visible="no" active="no"/>
-<layer number="35" name="tGlue" color="7" fill="4" visible="no" active="no"/>
-<layer number="36" name="bGlue" color="7" fill="5" visible="no" active="no"/>
-<layer number="37" name="tTest" color="7" fill="1" visible="no" active="no"/>
-<layer number="38" name="bTest" color="7" fill="1" visible="no" active="no"/>
-<layer number="39" name="tKeepout" color="4" fill="11" visible="no" active="no"/>
-<layer number="40" name="bKeepout" color="1" fill="11" visible="no" active="no"/>
-<layer number="41" name="tRestrict" color="4" fill="10" visible="no" active="no"/>
-<layer number="42" name="bRestrict" color="1" fill="10" visible="no" active="no"/>
-<layer number="43" name="vRestrict" color="2" fill="10" visible="no" active="no"/>
-<layer number="44" name="Drills" color="7" fill="1" visible="no" active="no"/>
-<layer number="45" name="Holes" color="7" fill="1" visible="no" active="no"/>
-<layer number="46" name="Milling" color="3" fill="1" visible="no" active="no"/>
-<layer number="47" name="Measures" color="7" fill="1" visible="no" active="no"/>
-<layer number="48" name="Document" color="7" fill="1" visible="no" active="no"/>
-<layer number="49" name="Reference" color="13" fill="1" visible="no" active="no"/>
-<layer number="50" name="dxf" color="7" fill="1" visible="no" active="no"/>
-<layer number="51" name="tDocu" color="14" fill="1" visible="no" active="no"/>
-<layer number="52" name="bDocu" color="7" fill="1" visible="no" active="no"/>
-<layer number="53" name="tGND_GNDA" color="7" fill="9" visible="no" active="no"/>
-<layer number="54" name="bGND_GNDA" color="1" fill="9" visible="no" active="no"/>
-<layer number="56" name="wert" color="7" fill="1" visible="no" active="no"/>
-<layer number="57" name="tCAD" color="7" fill="1" visible="no" active="no"/>
-<layer number="91" name="Nets" color="2" fill="1" visible="yes" active="yes"/>
-<layer number="92" name="Busses" color="1" fill="1" visible="yes" active="yes"/>
-<layer number="93" name="Pins" color="2" fill="1" visible="no" active="yes"/>
-<layer number="94" name="Symbols" color="4" fill="1" visible="yes" active="yes"/>
-<layer number="95" name="Names" color="7" fill="1" visible="yes" active="yes"/>
-<layer number="96" name="Values" color="7" fill="1" visible="yes" active="yes"/>
-<layer number="97" name="Info" color="7" fill="1" visible="yes" active="yes"/>
-<layer number="98" name="Guide" color="6" fill="1" visible="yes" active="yes"/>
-<layer number="99" name="SpiceOrder" color="7" fill="1" visible="no" active="no"/>
-<layer number="100" name="Muster" color="7" fill="1" visible="no" active="no"/>
-<layer number="101" name="Patch_Top" color="12" fill="4" visible="no" active="yes"/>
-<layer number="102" name="Vscore" color="7" fill="1" visible="no" active="yes"/>
-<layer number="103" name="tMap" color="7" fill="1" visible="no" active="yes"/>
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-You may notice that each hole has been shifted either up or down by 0.005 of an inch from it's more standard position (which is a perfectly straight line).  
-This slight alteration caused the pins (the squares in the middle) to touch the edges of the holes.  Because they are alternating, it causes a "brace" 
-to hold the component in place.  0.005 has proven to be the perfect amount of "off-center" position when using our standard breakaway headers.
-Although looks a little odd when you look at the bare footprint, once you have a header in there, the alteration is very hard to notice.  Also,
-if you push a header all the way into place, it is covered up entirely on the bottom side.  This idea of altering the position of holes to aid alignment 
-will be further integrated into the Sparkfun Library for other footprints.  It can help hold any component with 3 or more connection pins.</description>
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-You may notice that each hole has been shifted either up or down by 0.005 of an inch from it's more standard position (which is a perfectly straight line).  
-This slight alteration caused the pins (the squares in the middle) to touch the edges of the holes.  Because they are alternating, it causes a "brace" 
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-Although looks a little odd when you look at the bare footprint, once you have a header in there, the alteration is very hard to notice.  Also,
-if you push a header all the way into place, it is covered up entirely on the bottom side.  This idea of altering the position of holes to aid alignment 
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-You may notice that each hole has been shifted either up or down by 0.005 of an inch from it's more standard position (which is a perfectly straight line).  
-This slight alteration caused the pins (the squares in the middle) to touch the edges of the holes.  Because they are alternating, it causes a "brace" 
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-Although looks a little odd when you look at the bare footprint, once you have a header in there, the alteration is very hard to notice.  Also,
-if you push a header all the way into place, it is covered up entirely on the bottom side.  This idea of altering the position of holes to aid alignment 
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-<smd name="2-2" x="2.54" y="-1.65" dx="2" dy="1" layer="1" rot="R90"/>
-<smd name="3-2" x="5.08" y="1.65" dx="2" dy="1" layer="1" rot="R90"/>
-<smd name="4-2" x="7.62" y="-1.65" dx="2" dy="1" layer="1" rot="R90"/>
-<smd name="5-2" x="10.16" y="1.65" dx="2" dy="1" layer="1" rot="R90"/>
-<smd name="6-2" x="12.7" y="-1.65" dx="2" dy="1" layer="1" rot="R90"/>
-<text x="0" y="2.921" size="1.27" layer="25" ratio="10">&gt;NAME</text>
-<text x="0" y="-4.191" size="1.27" layer="27">&gt;VALUE</text>
-</package>
-<package name="EM406">
-<wire x1="0" y1="-2.921" x2="5.08" y2="-2.921" width="0.254" layer="21"/>
-<wire x1="-1.778" y1="-0.762" x2="-1.778" y2="0.635" width="0.254" layer="21"/>
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-<circle x="0" y="1.27" radius="0.1047" width="0.4064" layer="21"/>
-<smd name="P$1" x="-1.3" y="-2.225" dx="1.2" dy="1.8" layer="1"/>
-<smd name="P$2" x="6.3" y="-2.225" dx="1.2" dy="1.8" layer="1"/>
-<smd name="1" x="0" y="0" dx="0.6" dy="1.55" layer="1"/>
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-<smd name="5" x="4" y="0" dx="0.6" dy="1.55" layer="1"/>
-<smd name="6" x="5" y="0" dx="0.6" dy="1.55" layer="1"/>
-<text x="1.27" y="1.27" size="0.4064" layer="25">&gt;Name</text>
-<text x="1.27" y="-3.81" size="0.4064" layer="27">&gt;VALUE</text>
-</package>
-<package name="1X02">
-<wire x1="-0.635" y1="1.27" x2="0.635" y2="1.27" width="0.2032" layer="21"/>
-<wire x1="0.635" y1="1.27" x2="1.27" y2="0.635" width="0.2032" layer="21"/>
-<wire x1="1.27" y1="-0.635" x2="0.635" y2="-1.27" width="0.2032" layer="21"/>
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-<rectangle x1="-0.254" y1="-0.254" x2="0.254" y2="0.254" layer="51"/>
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-<package name="MOLEX-1X2">
-<wire x1="-1.27" y1="3.048" x2="-1.27" y2="-2.54" width="0.127" layer="21"/>
-<wire x1="3.81" y1="3.048" x2="3.81" y2="-2.54" width="0.127" layer="21"/>
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-<wire x1="0" y1="-1.27" x2="2.54" y2="-1.27" width="0.127" layer="21"/>
-<wire x1="2.54" y1="-1.27" x2="2.54" y2="-2.54" width="0.127" layer="21"/>
-<pad name="1" x="0" y="0" drill="1.016" diameter="1.8796" shape="square"/>
-<pad name="2" x="2.54" y="0" drill="1.016" diameter="1.8796"/>
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-<package name="SCREWTERMINAL-3.5MM-2">
-<wire x1="-1.75" y1="3.4" x2="5.25" y2="3.4" width="0.2032" layer="21"/>
-<wire x1="5.25" y1="3.4" x2="5.25" y2="-2.8" width="0.2032" layer="21"/>
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-<wire x1="5.25" y1="3.15" x2="5.65" y2="3.15" width="0.2032" layer="51"/>
-<wire x1="5.65" y1="3.15" x2="5.65" y2="2.15" width="0.2032" layer="51"/>
-<wire x1="5.65" y1="2.15" x2="5.25" y2="2.15" width="0.2032" layer="51"/>
-<circle x="2" y="3" radius="0.2828" width="0.127" layer="51"/>
-<pad name="1" x="0" y="0" drill="1.2" diameter="2.032" shape="square"/>
-<pad name="2" x="3.5" y="0" drill="1.2" diameter="2.032"/>
-<text x="-1.27" y="2.54" size="0.4064" layer="25">&gt;NAME</text>
-<text x="-1.27" y="1.27" size="0.4064" layer="27">&gt;VALUE</text>
-</package>
-<package name="JST-2-SMD">
-<description>2mm SMD side-entry connector. tDocu layer indicates the actual physical plastic housing. +/- indicate SparkFun standard batteries and wiring.</description>
-<wire x1="-4" y1="-1" x2="-4" y2="-4.5" width="0.2032" layer="21"/>
-<wire x1="-4" y1="-4.5" x2="-3.2" y2="-4.5" width="0.2032" layer="21"/>
-<wire x1="-3.2" y1="-4.5" x2="-3.2" y2="-2" width="0.2032" layer="21"/>
-<wire x1="-3.2" y1="-2" x2="-2" y2="-2" width="0.2032" layer="21"/>
-<wire x1="2" y1="-2" x2="3.2" y2="-2" width="0.2032" layer="21"/>
-<wire x1="3.2" y1="-2" x2="3.2" y2="-4.5" width="0.2032" layer="21"/>
-<wire x1="3.2" y1="-4.5" x2="4" y2="-4.5" width="0.2032" layer="21"/>
-<wire x1="4" y1="-4.5" x2="4" y2="-1" width="0.2032" layer="21"/>
-<wire x1="2" y1="3" x2="-2" y2="3" width="0.2032" layer="21"/>
-<smd name="1" x="-1" y="-3.7" dx="1" dy="4.6" layer="1"/>
-<smd name="2" x="1" y="-3.7" dx="1" dy="4.6" layer="1"/>
-<smd name="NC1" x="-3.4" y="1.5" dx="3.4" dy="1.6" layer="1" rot="R90"/>
-<smd name="NC2" x="3.4" y="1.5" dx="3.4" dy="1.6" layer="1" rot="R90"/>
-<text x="-1.27" y="1.27" size="0.4064" layer="25">&gt;Name</text>
-<text x="-1.27" y="0" size="0.4064" layer="27">&gt;Value</text>
-<text x="2.159" y="-4.445" size="1.27" layer="51">+</text>
-<text x="-2.921" y="-4.445" size="1.27" layer="51">-</text>
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-<wire x1="-1.27" y1="1.27" x2="-1.27" y2="-1.27" width="0.127" layer="21"/>
-<wire x1="-1.27" y1="-1.27" x2="5.08" y2="-1.27" width="0.127" layer="21"/>
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-<wire x1="5.08" y1="1.27" x2="-1.27" y2="1.27" width="0.127" layer="21"/>
-<pad name="P$1" x="0" y="0" drill="1.0668"/>
-<pad name="P$2" x="3.81" y="0" drill="1.0668"/>
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-<package name="JST-2-SMD-VERT">
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-<wire x1="4.2" y1="2.97" x2="4.2" y2="-2.13" width="0.2032" layer="51"/>
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-<wire x1="4.2" y1="-2.1" x2="4.2" y2="-1.7" width="0.2032" layer="21"/>
-<wire x1="-2" y1="-2.1" x2="-4.1" y2="-2.1" width="0.2032" layer="21"/>
-<wire x1="-4.1" y1="-2.1" x2="-4.1" y2="-1.8" width="0.2032" layer="21"/>
-<smd name="P$1" x="-3.4" y="0.27" dx="3" dy="1.6" layer="1" rot="R90"/>
-<smd name="P$2" x="3.4" y="0.27" dx="3" dy="1.6" layer="1" rot="R90"/>
-<smd name="VCC" x="-1" y="-2" dx="1" dy="5.5" layer="1"/>
-<smd name="GND" x="1" y="-2" dx="1" dy="5.5" layer="1"/>
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-<text x="2.24" y="3.48" size="1.27" layer="27">&gt;Value</text>
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-<pad name="P$1" x="0" y="0" drill="1.6002"/>
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-<pad name="P$4" x="12.0904" y="8.4582" drill="1.6002"/>
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-<wire x1="8.1" y1="-3.3" x2="-3.1" y2="-3.3" width="0.2032" layer="21"/>
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-<pad name="1" x="0" y="0" drill="1.3" diameter="2.032" shape="square"/>
-<pad name="2" x="5" y="0" drill="1.3" diameter="2.032"/>
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-</package>
-<package name="1X02_LOCK">
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-<wire x1="0.635" y1="1.27" x2="1.27" y2="0.635" width="0.2032" layer="21"/>
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-<wire x1="3.81" y1="0.635" x2="3.81" y2="-0.635" width="0.2032" layer="21"/>
-<pad name="1" x="-0.1778" y="0" drill="1.016" diameter="1.8796" rot="R90"/>
-<pad name="2" x="2.7178" y="0" drill="1.016" diameter="1.8796" rot="R90"/>
-<text x="-1.3462" y="1.8288" size="1.27" layer="25" ratio="10">&gt;NAME</text>
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-<rectangle x1="2.2479" y1="-0.2921" x2="2.8321" y2="0.2921" layer="51"/>
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-<package name="MOLEX-1X2_LOCK">
-<wire x1="-1.27" y1="3.048" x2="-1.27" y2="-2.54" width="0.127" layer="21"/>
-<wire x1="3.81" y1="3.048" x2="3.81" y2="-2.54" width="0.127" layer="21"/>
-<wire x1="3.81" y1="3.048" x2="-1.27" y2="3.048" width="0.127" layer="21"/>
-<wire x1="3.81" y1="-2.54" x2="2.54" y2="-2.54" width="0.127" layer="21"/>
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-<wire x1="0" y1="-2.54" x2="-1.27" y2="-2.54" width="0.127" layer="21"/>
-<wire x1="0" y1="-2.54" x2="0" y2="-1.27" width="0.127" layer="21"/>
-<wire x1="0" y1="-1.27" x2="2.54" y2="-1.27" width="0.127" layer="21"/>
-<wire x1="2.54" y1="-1.27" x2="2.54" y2="-2.54" width="0.127" layer="21"/>
-<pad name="1" x="-0.127" y="0" drill="1.016" diameter="1.8796" shape="square"/>
-<pad name="2" x="2.667" y="0" drill="1.016" diameter="1.8796"/>
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-<rectangle x1="2.2479" y1="-0.2921" x2="2.8321" y2="0.2921" layer="51"/>
-</package>
-<package name="1X02_LOCK_LONGPADS">
-<description>This footprint was designed to help hold the alignment of a through-hole component (i.e.  6-pin header) while soldering it into place.  
-You may notice that each hole has been shifted either up or down by 0.005 of an inch from it's more standard position (which is a perfectly straight line).  
-This slight alteration caused the pins (the squares in the middle) to touch the edges of the holes.  Because they are alternating, it causes a "brace" 
-to hold the component in place.  0.005 has proven to be the perfect amount of "off-center" position when using our standard breakaway headers.
-Although looks a little odd when you look at the bare footprint, once you have a header in there, the alteration is very hard to notice.  Also,
-if you push a header all the way into place, it is covered up entirely on the bottom side.  This idea of altering the position of holes to aid alignment 
-will be further integrated into the Sparkfun Library for other footprints.  It can help hold any component with 3 or more connection pins.</description>
-<wire x1="1.651" y1="0" x2="0.889" y2="0" width="0.2032" layer="21"/>
-<wire x1="-1.27" y1="0" x2="-1.016" y2="0" width="0.2032" layer="21"/>
-<wire x1="-1.27" y1="0" x2="-1.27" y2="0.9906" width="0.2032" layer="21"/>
-<wire x1="-1.27" y1="0.9906" x2="-0.9906" y2="1.27" width="0.2032" layer="21"/>
-<wire x1="-1.27" y1="0" x2="-1.27" y2="-0.9906" width="0.2032" layer="21"/>
-<wire x1="-1.27" y1="-0.9906" x2="-0.9906" y2="-1.27" width="0.2032" layer="21"/>
-<wire x1="3.81" y1="0" x2="3.556" y2="0" width="0.2032" layer="21"/>
-<wire x1="3.81" y1="0" x2="3.81" y2="-0.9906" width="0.2032" layer="21"/>
-<wire x1="3.81" y1="-0.9906" x2="3.5306" y2="-1.27" width="0.2032" layer="21"/>
-<wire x1="3.81" y1="0" x2="3.81" y2="0.9906" width="0.2032" layer="21"/>
-<wire x1="3.81" y1="0.9906" x2="3.5306" y2="1.27" width="0.2032" layer="21"/>
-<pad name="1" x="-0.127" y="0" drill="1.016" shape="long" rot="R90"/>
-<pad name="2" x="2.667" y="0" drill="1.016" shape="long" rot="R90"/>
-<text x="-1.27" y="1.778" size="1.27" layer="25" font="vector">&gt;NAME</text>
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-<text x="-7.62" y="13.208" size="1.778" layer="95">&gt;Name</text>
-<text x="-7.62" y="-12.7" size="1.778" layer="95">&gt;Value</text>
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-<pin name="2" x="-12.7" y="7.62" visible="pin" length="middle"/>
-<pin name="3" x="-12.7" y="5.08" visible="pin" length="middle"/>
-<pin name="4" x="-12.7" y="2.54" visible="pin" length="middle"/>
-<pin name="8" x="-12.7" y="-7.62" visible="pin" length="middle"/>
-<pin name="7" x="-12.7" y="-5.08" visible="pin" length="middle"/>
-<pin name="6" x="-12.7" y="-2.54" visible="pin" length="middle"/>
-<pin name="5" x="-12.7" y="0" visible="pin" length="middle"/>
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-<symbol name="M06">
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-<pin name="2" x="5.08" y="-2.54" visible="pad" length="middle" direction="pas" swaplevel="1" rot="R180"/>
-<pin name="3" x="5.08" y="0" visible="pad" length="middle" direction="pas" swaplevel="1" rot="R180"/>
-<pin name="4" x="5.08" y="2.54" visible="pad" length="middle" direction="pas" swaplevel="1" rot="R180"/>
-<pin name="5" x="5.08" y="5.08" visible="pad" length="middle" direction="pas" swaplevel="1" rot="R180"/>
-<pin name="6" x="5.08" y="7.62" visible="pad" length="middle" direction="pas" swaplevel="1" rot="R180"/>
-</symbol>
-<symbol name="M02">
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-</symbol>
-</symbols>
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-<deviceset name="RJ45-8">
-<description>&lt;b&gt;RJ45 Jack&lt;/b&gt;
-Simple RJ45, 8-pin connection - connector for common Cat5, Cat5e, and Cat6 Ethernet cables. Footprint not yet proven in production. Connector sku is PRT-00643; Breakout PCB sku is BOB-00716.</description>
-<gates>
-<gate name="G$1" symbol="RJ45-8" x="0" y="0"/>
-</gates>
-<devices>
-<device name="PTH" package="RJ45-8">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-<connect gate="G$1" pin="7" pad="7"/>
-<connect gate="G$1" pin="8" pad="8"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-</devices>
-</deviceset>
-<deviceset name="M06" prefix="JP" uservalue="yes">
-<description>&lt;b&gt;Header 6&lt;/b&gt;
-Standard 6-pin 0.1" header. Use with straight break away headers (SKU : PRT-00116), right angle break away headers (PRT-00553), swiss pins (PRT-00743), machine pins (PRT-00117), and female headers (PRT-00115). Molex polarized connector foot print use with SKU : PRT-08094 with associated crimp pins and housings.
-
-NOTES ON THE VARIANTS LOCK and LOCK_LONGPADS...
-This footprint was designed to help hold the alignment of a through-hole component (i.e.  6-pin header) while soldering it into place.  
-You may notice that each hole has been shifted either up or down by 0.005 of an inch from it's more standard position (which is a perfectly straight line).  
-This slight alteration caused the pins (the squares in the middle) to touch the edges of the holes.  Because they are alternating, it causes a "brace" 
-to hold the component in place.  0.005 has proven to be the perfect amount of "off-center" position when using our standard breakaway headers.
-Although looks a little odd when you look at the bare footprint, once you have a header in there, the alteration is very hard to notice.  Also,
-if you push a header all the way into place, it is covered up entirely on the bottom side.  This idea of altering the position of holes to aid alignment 
-will be further integrated into the Sparkfun Library for other footprints.  It can help hold any component with 3 or more connection pins.</description>
-<gates>
-<gate name="G$1" symbol="M06" x="-2.54" y="0"/>
-</gates>
-<devices>
-<device name="SIP" package="1X06">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POLAR" package="MOLEX-1X6">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="RA" package="MOLEX-1X6-RA">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMD" package="1X06-SMD">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="LOCK" package="1X06_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="LOCK_LONGPADS" package="1X06_LOCK_LONGPADS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POLAR_LOCK" package="MOLEX-1X6_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="RA_LOCK" package="MOLEX-1X6-RA_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SIP_LOCK" package="1X06-SIP_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="FEMALE_LOCK" package="1X06_FEMALE_LOCK.010">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="LONGPADS" package="1X06_LONGPADS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="1X06-SMD_EDGE_FEMALE" package="1X06-SMD_EDGE">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="3.5MM-6" package="SCREWTERMINAL-3.5MM-6">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMDF" package="1X06-SMD-FEMALE">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMD-FEMALE-V2" package="1X06-SMD-FEMALE-V2">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POGOPIN_HOLES_ONLY" package="1X06_HOLES_ONLY">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMD-STRAIGHT" package="1X06_SMD_STRAIGHT">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMD-STRAIGHT-ALT" package="1X06_SMD_STRAIGHT_ALT">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="SMD-STRAIGHT-COMBO" package="1X06_SMD_STRAIGHT_COMBO">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="EM406" package="EM406">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-<connect gate="G$1" pin="4" pad="4"/>
-<connect gate="G$1" pin="5" pad="5"/>
-<connect gate="G$1" pin="6" pad="6"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-</devices>
-</deviceset>
-<deviceset name="M02" prefix="JP" uservalue="yes">
-<description>&lt;b&gt;Header 2&lt;/b&gt;
-Standard 2-pin 0.1" header. Use with straight break away headers (SKU : PRT-00116), right angle break away headers (PRT-00553), swiss pins (PRT-00743), machine pins (PRT-00117), and female headers (PRT-00115). Molex polarized connector foot print use with SKU : PRT-08233 with associated crimp pins and housings.</description>
-<gates>
-<gate name="G$1" symbol="M02" x="-2.54" y="0"/>
-</gates>
-<devices>
-<device name="PTH" package="1X02">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POLAR" package="MOLEX-1X2">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="3.5MM" package="SCREWTERMINAL-3.5MM-2">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="-JST-2MM-SMT" package="JST-2-SMD">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH2" package="1X02_BIG">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="4UCON-15767" package="JST-2-SMD-VERT">
-<connects>
-<connect gate="G$1" pin="1" pad="GND"/>
-<connect gate="G$1" pin="2" pad="VCC"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="ROCKER" package="R_SW_TH">
-<connects>
-<connect gate="G$1" pin="1" pad="P$3"/>
-<connect gate="G$1" pin="2" pad="P$4"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="5MM" package="SCREWTERMINAL-5MM-2">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="LOCK" package="1X02_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POLAR_LOCK" package="MOLEX-1X2_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="LOCK_LONGPADS" package="1X02_LOCK_LONGPADS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="3.5MM_LOCK" package="SCREWTERMINAL-3.5MM-2_LOCK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH3" package="1X02_LONGPADS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="1X02_NO_SILK" package="1X02_NO_SILK">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="JST-PTH-2" package="JST-2-PTH">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH4" package="1X02_XTRA_BIG">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="POGO_PIN_HOLES_ONLY" package="1X02_PP_HOLES_ONLY">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="3.5MM-NO_SILK" package="SCREWTERMINAL-3.5MM-2-NS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="-JST-2-PTH-NO_SILK" package="JST-2-PTH-NS">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="JST-PTH-2-KIT" package="JST-2-PTH-KIT">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-</devices>
-</deviceset>
-</devicesets>
-</library>
-<library name="bourns">
-<description>&lt;b&gt;Bourns Trimmers and Potentiometers&lt;/b&gt;&lt;p&gt;
-Trim pots, potentiometers, poly-fuses and other components by Bourns.
-&lt;h4&gt;&lt;i&gt;Created by Bob Starr (rtzaudio@mindspring.com)&lt;br&gt;
-Updated 01/08/2005&lt;/i&gt;&lt;/h4&gt;</description>
-<packages>
-<package name="3362H">
-<description>1/4" Square Trimmer</description>
-<wire x1="-1.778" y1="-2.413" x2="-2.032" y2="-2.667" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="-2.413" x2="2.032" y2="-2.667" width="0.1524" layer="51"/>
-<wire x1="2.5146" y1="-0.635" x2="2.8956" y2="-0.635" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="1.016" x2="2.032" y2="1.27" width="0.1524" layer="51"/>
-<wire x1="0" y1="1.8288" x2="0" y2="2.2098" width="0.1524" layer="51"/>
-<wire x1="-1.905" y1="1.016" x2="-2.159" y2="1.27" width="0.1524" layer="51"/>
-<wire x1="-2.5146" y1="-0.635" x2="-2.8956" y2="-0.635" width="0.1524" layer="51"/>
-<wire x1="-1.5875" y1="-0.3175" x2="-0.3175" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="-0.3175" x2="-0.3175" y2="0.9525" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="0.9525" x2="0.3175" y2="0.9525" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="0.9525" x2="0.3175" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="-0.3175" x2="1.5875" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="1.5875" y1="-0.3175" x2="1.5875" y2="-0.9525" width="0.1778" layer="51"/>
-<wire x1="1.5875" y1="-0.9525" x2="0.3175" y2="-0.9525" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="-0.9525" x2="0.3175" y2="-2.2225" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="-2.2225" x2="-0.3175" y2="-2.2225" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="-2.2225" x2="-0.3175" y2="-0.9525" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="-0.9525" x2="-1.5875" y2="-0.9525" width="0.1778" layer="51"/>
-<wire x1="-1.5875" y1="-0.9525" x2="-1.5875" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="-1.5875" y1="-2.54" x2="1.5875" y2="-2.54" width="0.1778" layer="51" curve="-280.388858"/>
-<wire x1="-3.4925" y1="2.8575" x2="3.4925" y2="2.8575" width="0.1778" layer="21"/>
-<wire x1="3.4925" y1="2.8575" x2="3.4925" y2="-4.1275" width="0.1778" layer="21"/>
-<wire x1="3.4925" y1="-4.1275" x2="-3.4925" y2="-4.1275" width="0.1778" layer="21"/>
-<wire x1="-3.4925" y1="-4.1275" x2="-3.4925" y2="2.8575" width="0.1778" layer="21"/>
-<circle x="0" y="-0.635" radius="1.8513" width="0.1778" layer="51"/>
-<pad name="3" x="2.54" y="-3.175" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<pad name="1" x="-2.54" y="-3.175" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<pad name="2" x="0" y="-0.635" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<text x="-3.302" y="3.302" size="1.27" layer="25" ratio="10">&gt;NAME</text>
-<text x="-3.2766" y="-5.842" size="1.27" layer="27" ratio="10">&gt;VALUE</text>
-<text x="1.0795" y="-3.81" size="0.9906" layer="21" ratio="12">3</text>
-<text x="-1.651" y="-3.81" size="0.9906" layer="21" ratio="12">1</text>
-</package>
-<package name="3362P">
-<description>1/4" Square Trimmer</description>
-<wire x1="-1.778" y1="-1.778" x2="-2.032" y2="-2.032" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="-1.778" x2="2.032" y2="-2.032" width="0.1524" layer="51"/>
-<wire x1="2.5146" y1="0" x2="2.8956" y2="0" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="1.651" x2="2.032" y2="1.905" width="0.1524" layer="51"/>
-<wire x1="0" y1="2.4638" x2="0" y2="2.8448" width="0.1524" layer="51"/>
-<wire x1="-1.905" y1="1.651" x2="-2.159" y2="1.905" width="0.1524" layer="51"/>
-<wire x1="-2.5146" y1="0" x2="-2.8956" y2="0" width="0.1524" layer="51"/>
-<wire x1="-1.5875" y1="0.3175" x2="-0.3175" y2="0.3175" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="0.3175" x2="-0.3175" y2="1.5875" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="1.5875" x2="0.3175" y2="1.5875" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="1.5875" x2="0.3175" y2="0.3175" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="0.3175" x2="1.5875" y2="0.3175" width="0.1778" layer="51"/>
-<wire x1="1.5875" y1="0.3175" x2="1.5875" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="1.5875" y1="-0.3175" x2="0.3175" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="-0.3175" x2="0.3175" y2="-1.5875" width="0.1778" layer="51"/>
-<wire x1="0.3175" y1="-1.5875" x2="-0.3175" y2="-1.5875" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="-1.5875" x2="-0.3175" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="-0.3175" y1="-0.3175" x2="-1.5875" y2="-0.3175" width="0.1778" layer="51"/>
-<wire x1="-1.5875" y1="-0.3175" x2="-1.5875" y2="0.3175" width="0.1778" layer="51"/>
-<wire x1="-1.5875" y1="-1.905" x2="1.5875" y2="-1.905" width="0.1778" layer="51" curve="-280.388858"/>
-<wire x1="-3.4925" y1="3.4925" x2="3.4925" y2="3.4925" width="0.1778" layer="21"/>
-<wire x1="3.4925" y1="3.4925" x2="3.4925" y2="-3.4925" width="0.1778" layer="21"/>
-<wire x1="3.4925" y1="-3.4925" x2="-3.4925" y2="-3.4925" width="0.1778" layer="21"/>
-<wire x1="-3.4925" y1="-3.4925" x2="-3.4925" y2="3.4925" width="0.1778" layer="21"/>
-<circle x="0" y="0" radius="1.8513" width="0.1778" layer="51"/>
-<pad name="3" x="2.54" y="0" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<pad name="1" x="-2.54" y="0" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<pad name="2" x="0" y="2.54" drill="0.8128" diameter="1.6764" shape="octagon"/>
-<text x="-3.302" y="3.937" size="1.27" layer="25" ratio="10">&gt;NAME</text>
-<text x="-3.2766" y="-5.207" size="1.27" layer="27" ratio="10">&gt;VALUE</text>
-<text x="2.3495" y="-3.175" size="0.9906" layer="21" ratio="12">3</text>
-<text x="-2.921" y="-3.175" size="0.9906" layer="21" ratio="12">1</text>
-</package>
-<package name="3362R">
-<description>1/4" Square Trimmer</description>
-<wire x1="-1.778" y1="-1.778" x2="-2.032" y2="-2.032" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="-1.778" x2="2.032" y2="-2.032" width="0.1524" layer="51"/>
-<wire x1="2.5146" y1="0" x2="2.8956" y2="0" width="0.1524" layer="51"/>
-<wire x1="1.778" y1="1.651" x2="2.032" y2="1.905" width="0.1524" layer="51"/>
-<wire x1="0" y1="2.4638" x2="0" y2="2.8448" width="0.1524" layer="51"/>
-<wire x1="-1.905" y1="1.651" x2="-2.159" y2="1.905" width="0.1524" layer="51"/>
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-<devicesets>
-<deviceset name="3362" prefix="R" uservalue="yes">
-<description>&lt;b&gt;3362 Series&lt;/b&gt;&lt;p&gt;
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-<gates>
-<gate name="G$1" symbol="TPOT" x="0" y="-2.54"/>
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-<devices>
-<device name="H" package="3362H">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-<connect gate="G$1" pin="3" pad="3"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="P" package="3362P">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
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-<connect gate="G$1" pin="3" pad="3"/>
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-</device>
-<device name="R" package="3362R">
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-<connect gate="G$1" pin="1" pad="1"/>
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-<connect gate="G$1" pin="3" pad="3"/>
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-<device name="U" package="3362U">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
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-</connects>
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-</deviceset>
-</devicesets>
-</library>
-<library name="SparkFun-Resistors">
-<description>&lt;h3&gt;SparkFun Electronics' preferred foot prints&lt;/h3&gt;
-In this library you'll find resistors, capacitors, inductors, test points, jumper pads, etc.&lt;br&gt;&lt;br&gt;
-We've spent an enormous amount of time creating and checking these footprints and parts, but it is the end user's responsibility to ensure correctness and suitablity for a given componet or application. If you enjoy using this library, please buy one of our products at www.sparkfun.com.
-&lt;br&gt;&lt;br&gt;
-&lt;b&gt;Licensing:&lt;/b&gt; Creative Commons ShareAlike 4.0 International - https://creativecommons.org/licenses/by-sa/4.0/ 
-&lt;br&gt;&lt;br&gt;
-You are welcome to use this library for commercial purposes. For attribution, we ask that when you begin to sell your device using our footprint, you email us with a link to the product being sold. We want bragging rights that we helped (in a very small part) to create your 8th world wonder. We would like the opportunity to feature your device on our homepage.</description>
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-
-Yageo CFR series &lt;a href="http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf"&gt;http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf&lt;/a&gt;</description>
-<wire x1="-4.5" y1="-1.65" x2="-4.5" y2="1.65" width="0.2032" layer="21"/>
-<wire x1="-4.5" y1="1.65" x2="4.5" y2="1.65" width="0.2032" layer="21"/>
-<wire x1="4.5" y1="1.65" x2="4.5" y2="-1.65" width="0.2032" layer="21"/>
-<wire x1="4.5" y1="-1.65" x2="-4.5" y2="-1.65" width="0.2032" layer="21"/>
-<pad name="P$1" x="-6.35" y="0" drill="0.9" diameter="1.8796"/>
-<pad name="P$2" x="6.35" y="0" drill="0.9" diameter="1.8796"/>
-<text x="-4.445" y="2.54" size="0.8128" layer="25" font="vector" ratio="15">&gt;Name</text>
-<text x="-3.429" y="-0.381" size="0.8128" layer="21" font="vector" ratio="15">&gt;Value</text>
-</package>
-<package name="AXIAL-0.6">
-<description>1W Resistor, 0.6" wide&lt;p&gt;
-
-Yageo CFR series &lt;a href="http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf"&gt;http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf&lt;/a&gt;</description>
-<wire x1="-5.75" y1="-2.25" x2="-5.75" y2="2.25" width="0.2032" layer="21"/>
-<wire x1="-5.75" y1="2.25" x2="5.75" y2="2.25" width="0.2032" layer="21"/>
-<wire x1="5.75" y1="2.25" x2="5.75" y2="-2.25" width="0.2032" layer="21"/>
-<wire x1="5.75" y1="-2.25" x2="-5.75" y2="-2.25" width="0.2032" layer="21"/>
-<pad name="P$1" x="-7.62" y="0" drill="1.2" diameter="1.8796"/>
-<pad name="P$2" x="7.62" y="0" drill="1.2" diameter="1.8796"/>
-<text x="-5.715" y="3.175" size="0.8128" layer="25" font="vector" ratio="15">&gt;Name</text>
-<text x="-4.064" y="-0.381" size="0.8128" layer="21" font="vector" ratio="15">&gt;Value</text>
-</package>
-<package name="AXIAL-0.8">
-<description>2W Resistor, 0.8" wide&lt;p&gt;
-
-Yageo CFR series &lt;a href="http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf"&gt;http://www.yageo.com/pdf/yageo/Leaded-R_CFR_2008.pdf&lt;/a&gt;</description>
-<wire x1="-7.75" y1="-2.5" x2="-7.75" y2="2.5" width="0.2032" layer="21"/>
-<wire x1="-7.75" y1="2.5" x2="7.75" y2="2.5" width="0.2032" layer="21"/>
-<wire x1="7.75" y1="2.5" x2="7.75" y2="-2.5" width="0.2032" layer="21"/>
-<wire x1="7.75" y1="-2.5" x2="-7.75" y2="-2.5" width="0.2032" layer="21"/>
-<pad name="P$1" x="-10.16" y="0" drill="1.2" diameter="1.8796"/>
-<pad name="P$2" x="10.16" y="0" drill="1.2" diameter="1.8796"/>
-<text x="-7.62" y="3.175" size="0.8128" layer="25" font="vector" ratio="15">&gt;Name</text>
-<text x="-5.969" y="-0.381" size="0.8128" layer="21" font="vector" ratio="15">&gt;Value</text>
-</package>
-<package name="AXIAL-0.3-KIT">
-<description>&lt;h3&gt;AXIAL-0.3-KIT&lt;/h3&gt;
-
-Commonly used for 1/4W through-hole resistors. 0.3" pitch between holes.&lt;br&gt;
-&lt;br&gt;
-
-&lt;b&gt;Warning:&lt;/b&gt; This is the KIT version of the AXIAL-0.3 package. This package has a smaller diameter top stop mask, which doesn't cover the diameter of the pad. This means only the bottom side of the pads' copper will be exposed. You'll only be able to solder to the bottom side.</description>
-<wire x1="-2.54" y1="1.27" x2="2.54" y2="1.27" width="0.254" layer="21"/>
-<wire x1="2.54" y1="1.27" x2="2.54" y2="0" width="0.254" layer="21"/>
-<wire x1="2.54" y1="0" x2="2.54" y2="-1.27" width="0.254" layer="21"/>
-<wire x1="2.54" y1="-1.27" x2="-2.54" y2="-1.27" width="0.254" layer="21"/>
-<wire x1="-2.54" y1="-1.27" x2="-2.54" y2="0" width="0.254" layer="21"/>
-<wire x1="-2.54" y1="0" x2="-2.54" y2="1.27" width="0.254" layer="21"/>
-<wire x1="2.54" y1="0" x2="2.794" y2="0" width="0.254" layer="21"/>
-<wire x1="-2.54" y1="0" x2="-2.794" y2="0" width="0.254" layer="21"/>
-<pad name="P$1" x="-3.81" y="0" drill="1.016" diameter="2.032" stop="no"/>
-<pad name="P$2" x="3.81" y="0" drill="1.016" diameter="2.032" stop="no"/>
-<text x="-2.54" y="1.27" size="0.4064" layer="25" font="vector">&gt;Name</text>
-<text x="-2.159" y="-0.762" size="1.27" layer="21" font="vector" ratio="15">&gt;Value</text>
-<polygon width="0.127" layer="30">
-<vertex x="3.8201" y="-0.9449" curve="-90"/>
-<vertex x="2.8652" y="-0.0152" curve="-90.011749"/>
-<vertex x="3.8176" y="0.9602" curve="-90"/>
-<vertex x="4.7676" y="-0.0178" curve="-90.024193"/>
-</polygon>
-<polygon width="0.127" layer="29">
-<vertex x="3.8176" y="-0.4369" curve="-90.012891"/>
-<vertex x="3.3731" y="-0.0127" curve="-90"/>
-<vertex x="3.8176" y="0.4546" curve="-90"/>
-<vertex x="4.2595" y="-0.0025" curve="-90.012967"/>
-</polygon>
-<polygon width="0.127" layer="30">
-<vertex x="-3.8075" y="-0.9525" curve="-90"/>
-<vertex x="-4.7624" y="-0.0228" curve="-90.011749"/>
-<vertex x="-3.81" y="0.9526" curve="-90"/>
-<vertex x="-2.86" y="-0.0254" curve="-90.024193"/>
-</polygon>
-<polygon width="0.127" layer="29">
-<vertex x="-3.81" y="-0.4445" curve="-90.012891"/>
-<vertex x="-4.2545" y="-0.0203" curve="-90"/>
-<vertex x="-3.81" y="0.447" curve="-90"/>
-<vertex x="-3.3681" y="-0.0101" curve="-90.012967"/>
-</polygon>
-</package>
-<package name="AXIAL-0.3EZ">
-<description>This is the "EZ" version of the standard .3" spaced resistor package.&lt;br&gt;
-It has a reduced top mask to make it harder to install upside-down.</description>
-<wire x1="-2.54" y1="0.762" x2="2.54" y2="0.762" width="0.2032" layer="21"/>
-<wire x1="2.54" y1="0.762" x2="2.54" y2="0" width="0.2032" layer="21"/>
-<wire x1="2.54" y1="0" x2="2.54" y2="-0.762" width="0.2032" layer="21"/>
-<wire x1="2.54" y1="-0.762" x2="-2.54" y2="-0.762" width="0.2032" layer="21"/>
-<wire x1="-2.54" y1="-0.762" x2="-2.54" y2="0" width="0.2032" layer="21"/>
-<wire x1="-2.54" y1="0" x2="-2.54" y2="0.762" width="0.2032" layer="21"/>
-<wire x1="2.54" y1="0" x2="2.794" y2="0" width="0.2032" layer="21"/>
-<wire x1="-2.54" y1="0" x2="-2.794" y2="0" width="0.2032" layer="21"/>
-<pad name="P$1" x="-3.81" y="0" drill="0.9" diameter="1.8796" stop="no"/>
-<pad name="P$2" x="3.81" y="0" drill="0.9" diameter="1.8796" stop="no"/>
-<text x="-2.54" y="1.27" size="0.4064" layer="25" font="vector">&gt;Name</text>
-<text x="-2.032" y="-0.381" size="1.016" layer="21" font="vector" ratio="15">&gt;Value</text>
-<circle x="-3.81" y="0" radius="0.508" width="0" layer="29"/>
-<circle x="3.81" y="0" radius="0.523634375" width="0" layer="29"/>
-<circle x="-3.81" y="0" radius="1.02390625" width="0" layer="30"/>
-<circle x="3.81" y="0" radius="1.04726875" width="0" layer="30"/>
-</package>
-<package name="AXIAL-0.1EZ">
-<wire x1="1.27" y1="-0.762" x2="1.27" y2="0" width="0.2032" layer="21"/>
-<wire x1="1.27" y1="0" x2="1.27" y2="0.762" width="0.2032" layer="21"/>
-<wire x1="1.524" y1="0" x2="1.27" y2="0" width="0.2032" layer="21"/>
-<wire x1="1.27" y1="0" x2="1.016" y2="0" width="0.2032" layer="21"/>
-<pad name="P$1" x="0" y="0" drill="0.9" diameter="1.8796" stop="no"/>
-<pad name="P$2" x="2.54" y="0" drill="0.9" diameter="1.8796" stop="no"/>
-<text x="0" y="1.27" size="1.016" layer="25" font="vector" ratio="15">&gt;Name</text>
-<text x="0" y="-2.159" size="1.016" layer="21" font="vector" ratio="15">&gt;Value</text>
-<circle x="0" y="0" radius="0.4572" width="0" layer="29"/>
-<circle x="0" y="0" radius="1.016" width="0" layer="30"/>
-<circle x="2.54" y="0" radius="1.016" width="0" layer="30"/>
-<circle x="0" y="0" radius="0.4572" width="0" layer="29"/>
-<circle x="2.54" y="0" radius="0.4572" width="0" layer="29"/>
-</package>
-<package name="AXIAL-0.1">
-<wire x1="1.27" y1="-0.762" x2="1.27" y2="0" width="0.2032" layer="21"/>
-<wire x1="1.27" y1="0" x2="1.27" y2="0.762" width="0.2032" layer="21"/>
-<wire x1="1.524" y1="0" x2="1.27" y2="0" width="0.2032" layer="21"/>
-<wire x1="1.27" y1="0" x2="1.016" y2="0" width="0.2032" layer="21"/>
-<pad name="P$1" x="0" y="0" drill="0.9" diameter="1.8796"/>
-<pad name="P$2" x="2.54" y="0" drill="0.9" diameter="1.8796"/>
-<text x="0" y="1.27" size="1.016" layer="25" font="vector" ratio="15">&gt;Name</text>
-<text x="0" y="-2.159" size="1.016" layer="21" font="vector" ratio="15">&gt;Value</text>
-</package>
-<package name="0402-RES">
-<description>&lt;b&gt;CAPACITOR&lt;/b&gt;&lt;p&gt;
-chip</description>
-<wire x1="-0.245" y1="0.224" x2="0.245" y2="0.224" width="0.1524" layer="51"/>
-<wire x1="0.245" y1="-0.224" x2="-0.245" y2="-0.224" width="0.1524" layer="51"/>
-<wire x1="-1.473" y1="0.483" x2="1.473" y2="0.483" width="0.0508" layer="39"/>
-<wire x1="1.473" y1="0.483" x2="1.473" y2="-0.483" width="0.0508" layer="39"/>
-<wire x1="1.473" y1="-0.483" x2="-1.473" y2="-0.483" width="0.0508" layer="39"/>
-<wire x1="-1.473" y1="-0.483" x2="-1.473" y2="0.483" width="0.0508" layer="39"/>
-<smd name="1" x="-0.58" y="0" dx="0.85" dy="0.9" layer="1"/>
-<smd name="2" x="0.58" y="0" dx="0.85" dy="0.9" layer="1"/>
-<text x="-0.889" y="0.6985" size="0.4064" layer="25">&gt;NAME</text>
-<text x="-1.0795" y="-1.143" size="0.4064" layer="27">&gt;VALUE</text>
-<rectangle x1="-0.554" y1="-0.3048" x2="-0.254" y2="0.2951" layer="51"/>
-<rectangle x1="0.2588" y1="-0.3048" x2="0.5588" y2="0.2951" layer="51"/>
-<rectangle x1="-0.1999" y1="-0.3" x2="0.1999" y2="0.3" layer="35"/>
-<rectangle x1="-0.2032" y1="-0.3556" x2="0.2032" y2="0.3556" layer="21"/>
-</package>
-</packages>
-<symbols>
-<symbol name="RESISTOR">
-<wire x1="-2.54" y1="0" x2="-2.159" y2="1.016" width="0.1524" layer="94"/>
-<wire x1="-2.159" y1="1.016" x2="-1.524" y2="-1.016" width="0.1524" layer="94"/>
-<wire x1="-1.524" y1="-1.016" x2="-0.889" y2="1.016" width="0.1524" layer="94"/>
-<wire x1="-0.889" y1="1.016" x2="-0.254" y2="-1.016" width="0.1524" layer="94"/>
-<wire x1="-0.254" y1="-1.016" x2="0.381" y2="1.016" width="0.1524" layer="94"/>
-<wire x1="0.381" y1="1.016" x2="1.016" y2="-1.016" width="0.1524" layer="94"/>
-<wire x1="1.016" y1="-1.016" x2="1.651" y2="1.016" width="0.1524" layer="94"/>
-<wire x1="1.651" y1="1.016" x2="2.286" y2="-1.016" width="0.1524" layer="94"/>
-<wire x1="2.286" y1="-1.016" x2="2.54" y2="0" width="0.1524" layer="94"/>
-<text x="-3.81" y="1.4986" size="1.778" layer="95">&gt;NAME</text>
-<text x="-3.81" y="-3.302" size="1.778" layer="96">&gt;VALUE</text>
-<pin name="2" x="5.08" y="0" visible="off" length="short" direction="pas" swaplevel="1" rot="R180"/>
-<pin name="1" x="-5.08" y="0" visible="off" length="short" direction="pas" swaplevel="1"/>
-</symbol>
-</symbols>
-<devicesets>
-<deviceset name="RESISTOR" prefix="R" uservalue="yes">
-<description>&lt;b&gt;Resistor&lt;/b&gt;
-Basic schematic elements and footprints for 0603, 1206, and PTH resistors.</description>
-<gates>
-<gate name="G$1" symbol="RESISTOR" x="0" y="0"/>
-</gates>
-<devices>
-<device name="1206" package="1206">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="AXIAL-0.3" package="AXIAL-0.3">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="2010" package="R2010">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="0805-RES" package="0805">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="0603-RES" package="0603-RES">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="0603" package="0603-RES">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1/6W" package="1/6W-RES">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="2512" package="R2512">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1/4W" package="AXIAL-0.4">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1/2W" package="AXIAL-0.5">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1W" package="AXIAL-0.6">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-2W" package="AXIAL-0.8">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="KIT" package="AXIAL-0.3-KIT">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="EZ" package="AXIAL-0.3EZ">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1/4W-VERT-KIT" package="AXIAL-0.1EZ">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="PTH-1/4W-VERT" package="AXIAL-0.1">
-<connects>
-<connect gate="G$1" pin="1" pad="P$1"/>
-<connect gate="G$1" pin="2" pad="P$2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-<device name="0402" package="0402-RES">
-<connects>
-<connect gate="G$1" pin="1" pad="1"/>
-<connect gate="G$1" pin="2" pad="2"/>
-</connects>
-<technologies>
-<technology name=""/>
-</technologies>
-</device>
-</devices>
-</deviceset>
-</devicesets>
-</library>
-</libraries>
-<attributes>
-</attributes>
-<variantdefs>
-</variantdefs>
-<classes>
-<class number="0" name="default" width="0" drill="0">
-</class>
-</classes>
-<parts>
-<part name="U$1" library="SparkFun" deviceset="RJ45-8" device="PTH"/>
-<part name="JP1" library="SparkFun" deviceset="M06" device="3.5MM-6"/>
-<part name="VALVE" library="SparkFun" deviceset="M02" device="3.5MM_LOCK"/>
-<part name="R4" library="bourns" deviceset="3362" device="R"/>
-<part name="R1" library="SparkFun-Resistors" deviceset="RESISTOR" device="AXIAL-0.3" value="100"/>
-<part name="R2" library="SparkFun-Resistors" deviceset="RESISTOR" device="AXIAL-0.3" value="150"/>
-<part name="R3" library="SparkFun-Resistors" deviceset="RESISTOR" device="AXIAL-0.3" value="15K"/>
-</parts>
-<sheets>
-<sheet>
-<plain>
-</plain>
-<instances>
-<instance part="U$1" gate="G$1" x="81.28" y="0" rot="R270"/>
-<instance part="JP1" gate="G$1" x="81.28" y="63.5" rot="R270"/>
-<instance part="VALVE" gate="G$1" x="40.64" y="38.1" rot="R270"/>
-<instance part="R4" gate="G$1" x="119.38" y="45.72" rot="R270"/>
-<instance part="R1" gate="G$1" x="104.14" y="45.72" rot="R180"/>
-<instance part="R2" gate="G$1" x="101.6" y="20.32" rot="R90"/>
-<instance part="R3" gate="G$1" x="116.84" y="20.32" rot="R90"/>
-</instances>
-<busses>
-</busses>
-<nets>
-<net name="N$1" class="0">
-<segment>
-<wire x1="91.44" y1="12.7" x2="91.44" y2="38.1" width="0.1524" layer="91"/>
-<wire x1="91.44" y1="38.1" x2="88.9" y2="38.1" width="0.1524" layer="91"/>
-<wire x1="91.44" y1="38.1" x2="116.84" y2="38.1" width="0.1524" layer="91"/>
-<wire x1="88.9" y1="38.1" x2="88.9" y2="58.42" width="0.1524" layer="91"/>
-<junction x="91.44" y="38.1"/>
-<pinref part="U$1" gate="G$1" pin="1"/>
-<pinref part="JP1" gate="G$1" pin="6"/>
-<pinref part="R3" gate="G$1" pin="2"/>
-<wire x1="116.84" y1="25.4" x2="116.84" y2="38.1" width="0.1524" layer="91"/>
-</segment>
-</net>
-<net name="N$2" class="0">
-<segment>
-<wire x1="114.3" y1="15.24" x2="116.84" y2="15.24" width="0.1524" layer="91"/>
-<wire x1="116.84" y1="15.24" x2="119.38" y2="15.24" width="0.1524" layer="91"/>
-<wire x1="119.38" y1="15.24" x2="119.38" y2="40.64" width="0.1524" layer="91"/>
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-</net>
-<net name="N$9" class="0">
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-</sheets>
-</schematic>
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-</eagle>
diff --git a/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.zip b/CAD/PCB/MouseBoxPortBreakout/MouseBox_PortBreakout_r1.zip
new file mode 100644
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literal 0
HcmV?d00001


From 5e1a304c017bd00ea89264d096cc5fd7203368a8 Mon Sep 17 00:00:00 2001
From: Torben Ott <tott@cshl.edu>
Date: Wed, 28 Sep 2016 12:28:44 -0400
Subject: [PATCH 23/30] When stopping a Bpod protocol the custom user script
 UserKillScript.m located in the current protocol folder is executed, if it
 exists. Allows for custom actions at session end (eg email figures, etc).

---
 Functions/Launch manager/RunProtocol.m | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/Functions/Launch manager/RunProtocol.m b/Functions/Launch manager/RunProtocol.m
index 380e24a..3aa370e 100644
--- a/Functions/Launch manager/RunProtocol.m	
+++ b/Functions/Launch manager/RunProtocol.m	
@@ -41,6 +41,12 @@ function RunProtocol(Opstring)
             end
         end
     case 'Stop'
+        %execute user kill script
+        try
+            [~,Protocol]=fileparts(fileparts(fileparts(BpodSystem.DataPath)));
+            run(fullfile(BpodSystem.BpodUserPath,'Protocols',Protocol,'UserKillScript.m'));
+        catch
+        end
         if ~isempty(BpodSystem.CurrentProtocolName)
             disp(' ')
             disp([BpodSystem.CurrentProtocolName ' ended.'])

From 076d02a8162731313a99de893e4aa11a8b218b89 Mon Sep 17 00:00:00 2001
From: torbencshl <torben.cshl@gmail.com>
Date: Mon, 24 Oct 2016 16:41:43 -0400
Subject: [PATCH 24/30] Custom location for BpodUser (#8)

Adds .txt file containing string to BpodUserPath in Bpod home directory. Default is home directory.
---
 Functions/Internal Functions/BpodObject.m | 20 +++++++++++++++-----
 1 file changed, 15 insertions(+), 5 deletions(-)

diff --git a/Functions/Internal Functions/BpodObject.m b/Functions/Internal Functions/BpodObject.m
index 5093815..d982134 100644
--- a/Functions/Internal Functions/BpodObject.m	
+++ b/Functions/Internal Functions/BpodObject.m	
@@ -118,13 +118,23 @@
             
             obj.HostOS = system_dependent('getos');
             obj.BpodPath = BpodPath;
-%% FS MOD
-            if ispc 
-                import java.lang.*;
-                obj.BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+            %% FS MOD
+            if exist(fullfile(obj.BpodPath,'BpodUserPath.txt'),'file') == 2
+                UserFile = fopen(fullfile(obj.BpodPath,'BpodUserPath.txt'),'r');
+                BpodUserPath = fscanf(UserFile,'%s');
+                fclose(UserFile);
             else
-                obj.BpodUserPath = fullfile('~', 'BpodUser');
+                if ispc
+                    import java.lang.*;
+                    BpodUserPath = fullfile(char(System.getProperty('user.home')), 'BpodUser');
+                else
+                    BpodUserPath = fullfile('~', 'BpodUser');
                 end
+                UserFile = fopen(fullfile(obj.BpodPath,'BpodUserPath.txt'),'w');
+                fprintf(UserFile,'%s',BpodUserPath);
+                fclose(UserFile);
+            end
+            obj.BpodUserPath = BpodUserPath;
             if ~isdir(obj.BpodUserPath)
                 mkdir(obj.BpodUserPath);
                 warning(['Bpod user directory not found. Directory created at ' obj.BpodUserPath]);

From ffd003bf135097496e3c06147cde493ddd96d978 Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Thu, 3 Nov 2016 15:04:51 -0400
Subject: [PATCH 25/30] Very minor: 1) ignore BpodUserPath.txt 2) fix
 SaveBpodProtocolSettings so it works with more recent matlab versions.  I've
 tested these changes.  Sorry for not doing a pull request!!!

---
 .gitignore                                          | 3 ++-
 Functions/Launch manager/SaveBpodProtocolSettings.m | 6 +++++-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/.gitignore b/.gitignore
index 94f72a9..41d8c63 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,5 @@
 Calibration Files/**
 Data/**
 Protocols/**
-.gitmodules
\ No newline at end of file
+.gitmodules
+*BpodUserPath.txt
\ No newline at end of file
diff --git a/Functions/Launch manager/SaveBpodProtocolSettings.m b/Functions/Launch manager/SaveBpodProtocolSettings.m
index 33a477d..fe6cd26 100644
--- a/Functions/Launch manager/SaveBpodProtocolSettings.m	
+++ b/Functions/Launch manager/SaveBpodProtocolSettings.m	
@@ -19,4 +19,8 @@
 %}
 function SaveBpodProtocolSettings
 global BpodSystem
-save(BpodSystem.SettingsPath, 'BpodSystem.ProtocolSettings');
\ No newline at end of file
+
+% now compatible with recent matlab versions in which you can't save a
+% structure field directly (FS MOD)
+ProtocolSettings = BpodSystem.ProtocolSettings;
+save(BpodSystem.SettingsPath, 'ProtocolSettings');
\ No newline at end of file

From bc1ae7fb1f48bcc4c31711bb3a3e8885439d1c22 Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Thu, 30 Mar 2017 16:39:53 -0400
Subject: [PATCH 26/30] added edit text/string option to parameter GUI

---
 Functions/Plugins/ParameterGUI/BpodParameterGUI.m | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
index b08c8eb..2724d41 100644
--- a/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
+++ b/Functions/Plugins/ParameterGUI/BpodParameterGUI.m
@@ -126,6 +126,9 @@
                         case 'edit'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 1;
                             BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'edit', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
+                        case 'edittext'
+                            BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 8;
+                            BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'edit', 'String', ThisParam, 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
                         case 'text'
                             BpodSystem.GUIData.ParameterGUI.Styles(ParamNum) = 2;
                             BpodSystem.GUIHandles.ParameterGUI.Params{ParamNum} = uicontrol(htab,'Style', 'text', 'String', num2str(ThisParam), 'Position', [HPos+220 VPos+InPanelPos+2 200 25], 'FontWeight', 'normal', 'FontSize', 12, 'BackgroundColor','white', 'FontName', 'Arial','HorizontalAlignment','Center');
@@ -213,6 +216,13 @@
                     elseif Params.GUI.(ThisParamName) ~= ThisParamLastValue
                         set(ThisParamHandle, 'String', num2str(GUIParam));
                     end
+                case 8 % Edit Text
+                    GUIParam = get(ThisParamHandle, 'String');
+                    if ~strcmpi(GUIParam, ThisParamLastValue)
+                        Params.GUI.(ThisParamName) = GUIParam;
+                    elseif ~strcmpi(Params.GUI.(ThisParamName), ThisParamLastValue)
+                        set(ThisParamHandle, 'String', GUIParam);
+                    end                                     
                 case 2 % Text
                     GUIParam = Params.GUI.(ThisParamName);
                     Text = GUIParam;
@@ -269,6 +279,9 @@
                 case 1 % Edit
                     GUIParam = str2double(get(ThisParamHandle, 'String'));
                     Params.GUI.(ThisParamName) = GUIParam;
+                case 8 % Edit Text
+                    GUIParam = get(ThisParamHandle, 'String');
+                    Params.GUI.(ThisParamName) = GUIParam;                    
                 case 2 % Text
                     GUIParam = get(ThisParamHandle, 'String');
                     GUIParam = str2double(GUIParam);  

From 2a7b51fc2251e9ebb66b080a82c7a738ffc56894 Mon Sep 17 00:00:00 2001
From: Fitz Sturgill <fitzsturgill@gmail.com>
Date: Sat, 8 Apr 2017 16:34:44 -0400
Subject: [PATCH 27/30] testing changes to deal with TrialTypes intialized as
 vector of NaNs

---
 Functions/Plugins/Plots/TrialTypeOutcomePlot.m | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/Functions/Plugins/Plots/TrialTypeOutcomePlot.m b/Functions/Plugins/Plots/TrialTypeOutcomePlot.m
index f98b64f..729dc15 100644
--- a/Functions/Plugins/Plots/TrialTypeOutcomePlot.m
+++ b/Functions/Plugins/Plots/TrialTypeOutcomePlot.m
@@ -64,6 +64,9 @@ function TrialTypeOutcomePlot(AxesHandle, Action, varargin)
         end
         axes(AxesHandle);
         MaxTrialType = max(TrialTypeList);
+        if isnan(MaxTrialType)
+            MaxTrialType = 1; % for NaN filled TrialTypes, might occur if you determine trial type on the fly
+        end
         %plot in specified axes
         Xdata = 1:nTrialsToShow; Ydata = -TrialTypeList(Xdata);
         BpodSystem.GUIHandles.FutureTrialLine = line([Xdata,Xdata],[Ydata,Ydata],'LineStyle','none','Marker','o','MarkerEdge','b','MarkerFace','b', 'MarkerSize',6);
@@ -84,6 +87,9 @@ function TrialTypeOutcomePlot(AxesHandle, Action, varargin)
         TrialTypeList = varargin{2};
         OutcomeRecord = varargin{3};
         MaxTrialType = max(TrialTypeList);
+        if isnan(MaxTrialType)
+            MaxTrialType = 1; % for NaN filled TrialTypes, might occur if you determine trial type on the fly
+        end
         set(AxesHandle,'YLim',[-MaxTrialType-.5, -.5], 'YTick', -MaxTrialType:1:-1,'YTickLabel', strsplit(num2str(MaxTrialType:-1:-1)));
         if CurrentTrial<1
             CurrentTrial = 1;

From 54beae0654a95c291f86784f0902d7cb4bdb2fa9 Mon Sep 17 00:00:00 2001
From: marionbosc <bosc@cshl.edu>
Date: Tue, 16 May 2017 17:10:31 -0400
Subject: [PATCH 28/30] As the olfactometer IP address is often a string,
 turning it into a string makes an error

---
 Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
index 8e011e3..0ec6b04 100644
--- a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
+++ b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
@@ -1,5 +1,11 @@
 function SetBankFlowRate(OlfIP, Bank, FlowRate)
-IPString = [num2str(OlfIP(1)) '.' num2str(OlfIP(2)) '.' num2str(OlfIP(3)) '.' num2str(OlfIP(4))];
+
+if ~isstring(OlfIP) % in case OlfIP is a number instead of a string
+    IPString = [num2str(OlfIP(1)) '.' num2str(OlfIP(2)) '.' num2str(OlfIP(3)) '.' num2str(OlfIP(4))];
+else
+    IPString = OlfIP;
+end
+
 try
     TCPWrite(IPString, 3336, ['WRITE BankFlow' num2str(Bank) '_Actuator ' num2str(FlowRate)]);
 catch

From ef92eed0cb4703ba8377242fc5fc04e98c54b8df Mon Sep 17 00:00:00 2001
From: "ELENA-RIG\\Marion" <bosc@cshl.edu>
Date: Thu, 18 May 2017 16:38:18 -0400
Subject: [PATCH 29/30] As the olfactometer IP address is often a string,
 turning it into a string makes an error. I added a line to test wheter it is
 a number or not.

---
 .../Plugins/RechiaOlfactometer/SetBankFlowRate.asv  | 13 +++++++++++++
 .../Plugins/RechiaOlfactometer/SetBankFlowRate.m    |  2 +-
 2 files changed, 14 insertions(+), 1 deletion(-)
 create mode 100644 Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv

diff --git a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv
new file mode 100644
index 0000000..059db6f
--- /dev/null
+++ b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv
@@ -0,0 +1,13 @@
+function SetBankFlowRate(OlfIP, Bank, FlowRate)
+
+if ~ischar(OlfIP) % in case OlfIP is a number instead of a string
+    IPString = [num2str(OlfIP(1)) '.' num2str(OlfIP(2)) '.' num2str(OlfIP(3)) '.' num2str(OlfIP(4))];
+else
+    IPString = OlfIP;
+end
+
+try
+    TCPWrite(IPString, 3336, ['WRITE BankFlow' num2str(Bank) '_Actuator ' num2str(FlowRate)]);
+catch
+    error('Connection Error!')
+end
\ No newline at end of file
diff --git a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
index 0ec6b04..fbd027b 100644
--- a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
+++ b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.m
@@ -1,6 +1,6 @@
 function SetBankFlowRate(OlfIP, Bank, FlowRate)
 
-if ~isstring(OlfIP) % in case OlfIP is a number instead of a string
+if isnumeric(OlfIP) % in case OlfIP is a number instead of a string
     IPString = [num2str(OlfIP(1)) '.' num2str(OlfIP(2)) '.' num2str(OlfIP(3)) '.' num2str(OlfIP(4))];
 else
     IPString = OlfIP;

From 1d7fa8e5c46b847d1fc645bea9bf2dca45a36bb3 Mon Sep 17 00:00:00 2001
From: "ELENA-RIG\\Marion" <bosc@cshl.edu>
Date: Thu, 18 May 2017 17:12:14 -0400
Subject: [PATCH 30/30] As the olfactometer IP address is often a string,
 turning it into a string makes an error - debug

---
 .../Plugins/RechiaOlfactometer/SetBankFlowRate.asv  | 13 -------------
 1 file changed, 13 deletions(-)
 delete mode 100644 Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv

diff --git a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv b/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv
deleted file mode 100644
index 059db6f..0000000
--- a/Functions/Plugins/RechiaOlfactometer/SetBankFlowRate.asv
+++ /dev/null
@@ -1,13 +0,0 @@
-function SetBankFlowRate(OlfIP, Bank, FlowRate)
-
-if ~ischar(OlfIP) % in case OlfIP is a number instead of a string
-    IPString = [num2str(OlfIP(1)) '.' num2str(OlfIP(2)) '.' num2str(OlfIP(3)) '.' num2str(OlfIP(4))];
-else
-    IPString = OlfIP;
-end
-
-try
-    TCPWrite(IPString, 3336, ['WRITE BankFlow' num2str(Bank) '_Actuator ' num2str(FlowRate)]);
-catch
-    error('Connection Error!')
-end
\ No newline at end of file