bug: Can't install in Julia 1.12 #22
Description
Got the following error message whenever I attempted to import the package in Julia v1.12.2:
julia> using SimSpread
Info Given SimSpread was explicitly requested, output will be shown live
WARNING: Imported binding Base._sortslices was undeclared at import time during import to NamedArrays.
WARNING: Imported binding Base._negdims was undeclared at import time during import to NamedArrays.
WARNING: Imported binding Base.DimSelector was undeclared at import time during import to NamedArrays.
ERROR: LoadError: invalid method definition in NamedArrays: exported function Base._sortslices does not exist
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106
[2] include(mapexpr::Function, mod::Module, _path::String)
@ Base ./Base.jl:307
[3] top-level scope
@ ~/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:35
[4] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:3024
[6] top-level scope
@ stdin:5
[7] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2870
[9] include_string
@ ./loading.jl:2880 [inlined]
[10] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[11] _start()
@ Base ./client.jl:550
in expression starting at /Users/carlos/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106
in expression starting at /Users/carlos/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:9
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NamedArrays [86f7a689-2022-50b4-a561-43c23ac3c673] to "/Users/carlos/.julia/compiled/v1.12/NamedArrays/jl_Kx8ESA".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3311
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2679
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1297 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1289 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3882
[10] maybe_cachefile_lock
@ ./loading.jl:3879 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2665
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2493
[13] macro expansion
@ ./loading.jl:2421 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2386
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2362
[17] top-level scope
@ ~/.julia/packages/SimSpread/LaxUF/src/SimSpread.jl:10
[18] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:3024
[20] top-level scope
@ stdin:5
[21] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2870
[23] include_string
@ ./loading.jl:2880 [inlined]
[24] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[25] _start()
@ Base ./client.jl:550
in expression starting at /Users/carlos/.julia/packages/SimSpread/LaxUF/src/SimSpread.jl:1
in expression starting at stdin:5
✗ NamedArrays
✗ SimSpread
Precompiling SimSpread finished.
27 dependencies successfully precompiled in 66 seconds. 89 already precompiled.
ERROR: The following 1 direct dependency failed to precompile:
SimSpread
Failed to precompile SimSpread [afa5cc60-bf5a-45b9-aa6c-27158a106b2a] to "/Users/carlos/.julia/compiled/v1.12/SimSpread/jl_w35ORT".
WARNING: Imported binding Base._sortslices was undeclared at import time during import to NamedArrays.
WARNING: Imported binding Base._negdims was undeclared at import time during import to NamedArrays.
WARNING: Imported binding Base.DimSelector was undeclared at import time during import to NamedArrays.
ERROR: LoadError: invalid method definition in NamedArrays: exported function Base._sortslices does not exist
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106
[2] include(mapexpr::Function, mod::Module, _path::String)
@ Base ./Base.jl:307
[3] top-level scope
@ ~/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:35
[4] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:3024
[6] top-level scope
@ stdin:5
[7] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2870
[9] include_string
@ ./loading.jl:2880 [inlined]
[10] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[11] _start()
@ Base ./client.jl:550
in expression starting at /Users/carlos/.julia/packages/NamedArrays/spYk1/src/rearrange.jl:106
in expression starting at /Users/carlos/.julia/packages/NamedArrays/spYk1/src/NamedArrays.jl:9
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NamedArrays [86f7a689-2022-50b4-a561-43c23ac3c673] to "/Users/carlos/.julia/compiled/v1.12/NamedArrays/jl_Kx8ESA".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:44
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3311
[3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
@ Base ./loading.jl:2679
[4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93
[5] #mkpidlock#7
@ ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.12.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114
[7] #invokelatest_gr#232
@ ./reflection.jl:1297 [inlined]
[8] invokelatest_gr
@ ./reflection.jl:1289 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3882
[10] maybe_cachefile_lock
@ ./loading.jl:3879 [inlined]
[11] __require_prelocked(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2665
[12] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2493
[13] macro expansion
@ ./loading.jl:2421 [inlined]
[14] macro expansion
@ ./lock.jl:376 [inlined]
[15] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2386
[16] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2362
[17] top-level scope
@ ~/.julia/packages/SimSpread/LaxUF/src/SimSpread.jl:10
[18] include(mod::Module, _path::String)
@ Base ./Base.jl:306
[19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:3024
[20] top-level scope
@ stdin:5
[21] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base ./loading.jl:2870
[23] include_string
@ ./loading.jl:2880 [inlined]
[24] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:315
[25] _start()
@ Base ./client.jl:550
in expression starting at /Users/carlos/.julia/packages/SimSpread/LaxUF/src/SimSpread.jl:1
in expression starting at stdin:It seems that NamedArrays has problems at import time.