Code hardening

[AlexVCaron]

We arrived to the first code freeze of nf-scil. Congrats all, for the superstar work 🥳 !

Next tasks are going to be :

• Cleanup metadata files for modules :
  • Ensure inputs and outputs are in the correct order
  • Ensure inputs and outputs descriptions are clear enough
  • Ensure inputs and outputs types are valid
  • Validate the tools section contains all tools used by the module
  • Validate the keywords : at least 3, the most relevant possible
  • Validate the description, add a link to the official description of scripts used
• Uniformize the modules :
  • Validate tool categories (only names, no verbs)
  • Validate inputs have relevant names
  • Validate task.ext parameters have relevant names
  • Optimize writing
    • ternary short form
    • groovy trueness
    • groovy functions
    • readable bash
    • ...
• Harden tests :
  • Validate names are relevant
  • Validate test data are relevant
  • Port test data from repo and scilpy to nf-archives
  • Port tests to nf-test