diff --git a/assets/Docker/ANO_taxonomy_EC_V4.csv b/assets/Docker/ANO_taxonomy_EC_V4.csv new file mode 100644 index 0000000..28c8858 --- /dev/null +++ b/assets/Docker/ANO_taxonomy_EC_V4.csv @@ -0,0 +1,1326 @@ +Val_L;Val_R;R;G;B;Hex;Acronym;Level 1;Level 2;Level 3;Level4;Level 5;Level 6;Level 7;Level 8;Level 9;Level 10 +1190;3190;191;218;227;#BFDAE3;grey;grey Basic cell groups and regions;;;;;;;;; +184;2184;176;240;255;#B0F0FF;CH;grey Basic cell groups and regions;CH Cerebrum;;;;;;;; +219;2219;176;255;184;#B0FFB8;CTX;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;;;;;;; +220;2220;112;255;112;#70FF70;CTXpl;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;;;;;; +408;2408;112;255;113;#70FF71;Isocortex;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;;;;; +333;2333;38;143;69;#268F45;FRP;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical 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cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp1 Posterior parietal association areas, layer 1;;; +702;2702;0;159;172;#009DAC;PTLp2-3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp2-3 Posterior parietal association areas, layer 2-3;;; +703;2703;0;159;172;#009DAC;PTLp4;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp4 Posterior parietal association areas, layer 4;;; +704;2704;0;159;172;#009DAC;PTLp5;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp5 Posterior parietal association areas, layer 5;;; +705;2705;0;159;172;#009DAC;PTLp6a;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp6a Posterior parietal association areas, layer 6a;;; +706;2706;0;159;172;#009DAC;PTLp6b;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;PTLp6b Posterior parietal association areas, layer 6b;;; +986;2986;0;159;172;#009DAC;VISa;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;VISa Anterior area;;; +987;2987;0;159;172;#009DAC;VISa1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp Posterior parietal association areas;VISa Anterior area;VISa1 Anterior area, layer 1;; +988;2988;0;159;172;#009DAC;VISa2-3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;Isocortex Isocortex;PTLp 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Piriform area, molecular layer;;; +652;2652;106;203;186;#6ACBBA;PIR2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;PIR Piriform area;PIR2 Piriform area, pyramidal layer;;; +653;2653;106;203;186;#6ACBBA;PIR3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;PIR Piriform area;PIR3 Piriform area, polymorph layer;;; +537;2537;149;228;200;#95E4C8;NLOT;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;NLOT Nucleus of the lateral olfactory tract;;;; +539;2539;149;228;200;#95E4C8;NLOT1-3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;NLOT Nucleus of the lateral olfactory tract;NLOT1-3 Nucleus of the lateral olfactory tract, layers 1-3;;; +538;2538;149;228;200;#95E4C8;NLOT1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical 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cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;PAA Piriform-amygdalar area;PAA3 Piriform-amygdalar area, polymorph layer;;; +936;2936;168;236;211;#A8ECD3;TR;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;TR Postpiriform transition area;;;; +938;2938;168;236;211;#A8ECD3;TR1-3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;TR Postpiriform transition area;TR1-3 Postpiriform transition area, layers 1-3;;; +937;2937;168;236;211;#A8ECD3;TR1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;TR Postpiriform transition area;TR1 Postpiriform transition area, layers 1;;; +939;2939;168;236;211;#A8ECD3;TR2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;TR Postpiriform transition area;TR2 Postpiriform transition area, layers 2;;; +940;2940;168;236;211;#A8ECD3;TR3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;OLF Olfactory areas;TR Postpiriform transition area;TR3 Postpiriform transition area, layers 3;;; +357;2357;126;208;75;#7ED04B;HPF;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;;;;; +356;2356;126;208;75;#7ED04B;HIP;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;;;; +148;2148;126;208;75;#7ED04B;CA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;;; +149;2149;126;208;75;#7ED04B;CA1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA1 Field CA1;; +150;2150;126;208;75;#7ED04B;CA1slm;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA1 Field CA2;CA1slm Field CA1, stratum lacunosum-moleculare; +151;2151;126;208;75;#7ED04B;CA1so;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA1 Field CA3;CA1so Field CA1, stratum oriens; +152;2152;102;168;61;#66A83D;CA1sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA1 Field CA4;CA1sp Field CA1, pyramidal layer; +153;2153;126;208;75;#7ED04B;CA1sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA1 Field CA5;CA1sr Field CA1, stratum radiatum; +154;2154;126;208;75;#7ED04B;CA2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA2 Field CA2;; +155;2155;126;208;75;#7ED04B;CA2slm;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA2 Field CA3;CA2slm Field CA2, stratum lacunosum-moleculare; +156;2156;126;208;75;#7ED04B;CA2so;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA2 Field CA4;CA2so Field CA2, stratum oriens; +157;2157;102;168;61;#66A83D;CA2sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA2 Field CA5;CA2sp Field CA2, pyramidal layer; +158;2158;126;208;75;#7ED04B;CA2sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA2 Field CA6;CA2sr Field CA2, stratum radiatum; +159;2159;126;208;75;#7ED04B;CA3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA3;; +160;2160;126;208;75;#7ED04B;CA3slm;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA4;CA3slm Field CA3, stratum lacunosum-moleculare; +161;2161;126;208;75;#7ED04B;CA3slu;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA5;CA3slu Field CA3, stratum lucidum; +162;2162;126;208;75;#7ED04B;CA3so;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA6;CA3so Field CA3, stratum oriens; +163;2163;102;168;61;#66A83D;CA3sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA7;CA3sp Field CA3, pyramidal layer; +164;2164;126;208;75;#7ED04B;CA3sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;CA Ammon's horn;CA3 Field CA8;CA3sr Field CA3, stratum radiatum; +243;2243;126;208;75;#7ED04B;DG;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;;; +244;2244;126;208;75;#7ED04B;DG-mo;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DG-mo Dentate gyrus, molecular layer;; +245;2245;126;208;75;#7ED04B;DG-po;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DG-po Dentate gyrus, polymorph layer;; +246;2246;102;168;61;#66A83D;DG-sg;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DG-sg Dentate gyrus, granule cell layer;; +247;2247;126;208;75;#7ED04B;DG-sgz;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DG-sgz Dentate gyrus, subgranular zone;; +248;2248;126;208;75;#7ED04B;DGcr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGcr Dentate gyrus crest;; +249;2249;126;208;75;#7ED04B;DGcr-mo;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGcr Dentate gyrus crest;DGcr-mo Dentate gyrus crest, molecular layer; +250;2250;126;208;75;#7ED04B;DGcr-po;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGcr Dentate gyrus crest;DGcr-po Dentate gyrus crest, polymorph layer; +251;2251;126;208;75;#7ED04B;DGcr-sg;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGcr Dentate gyrus crest;DGcr-sg Dentate gyrus crest, granule cell layer; +252;2252;126;208;75;#7ED04B;DGlb;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGlb Dentate gyrus lateral blade;; +253;2253;126;208;75;#7ED04B;DGlb-mo;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGlb Dentate gyrus lateral blade;DGlb-mo Dentate gyrus lateral blade, molecular layer; +254;2254;126;208;75;#7ED04B;DGlb-po;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGlb Dentate gyrus lateral blade;DGlb-po Dentate gyrus lateral blade, polymorph layer; +255;2255;126;208;75;#7ED04B;DGlb-sg;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGlb Dentate gyrus lateral blade;DGlb-sg Dentate gyrus lateral blade, granule cell layer; +256;2256;126;208;75;#7ED04B;DGmb;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGmb Dentate gyrus medial blade;; +257;2257;126;208;75;#7ED04B;DGmb-mo;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGmb Dentate gyrus medial blade;DGmb-mo Dentate gyrus medial blade, molecular layer; +258;2258;126;208;75;#7ED04B;DGmb-po;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGmb Dentate gyrus medial blade;DGmb-po Dentate gyrus medial blade, polymorph layer; +259;2259;126;208;75;#7ED04B;DGmb-sg;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;DG Dentate gyrus;DGmb Dentate gyrus medial blade;DGmb-sg Dentate gyrus medial blade, granule cell layer; +322;2322;126;208;75;#7ED04B;FC;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;FC Fasciola cinerea;;; +370;2370;126;208;75;#7ED04B;IG;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;HIP Hippocampal region;IG Induseum griseum;;; +753;2753;50;184;37;#32B825;RHP;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;;;; +285;2285;50;184;37;#32B825;ENT;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;;; +286;2286;50;184;37;#32B825;ENTl;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;; +287;2287;50;184;37;#32B825;ENTl1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl1 Entorhinal area, lateral part, layer 1; +288;2288;50;184;37;#32B825;ENTl2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl2 Entorhinal area, lateral part, layer 2; +289;2289;50;184;37;#32B825;ENTl2-3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl2-3 Entorhinal area, lateral part, layer 2-3; +290;2290;50;184;37;#32B825;ENTl2a;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl2a Entorhinal area, lateral part, layer 2a; +291;2291;50;184;37;#32B825;ENTl2b;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl2b Entorhinal area, lateral part, layer 2b; +292;2292;50;184;37;#32B825;ENTl3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl3 Entorhinal area, lateral part, layer 3; +293;2293;50;184;37;#32B825;ENTl4;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl4 Entorhinal area, lateral part, layer 4; +294;2294;50;184;37;#32B825;ENTl4-5;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl4-5 Entorhinal area, lateral part, layer 4-5; +295;2295;50;184;37;#32B825;ENTl5;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl5 Entorhinal area, lateral part, layer 5; +296;2296;50;184;37;#32B825;ENTl5-6;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl5-6 Entorhinal area, lateral part, layer 5-6; +297;2297;50;184;37;#32B825;ENTl6a;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl6a Entorhinal area, lateral part, layer 6a; +298;2298;50;184;37;#32B825;ENTl6b;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTl Entorhinal area, lateral part;ENTl6b Entorhinal area, lateral part, layer 6b; +299;2299;50;184;37;#32B825;ENTm;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;; +300;2300;50;184;37;#32B825;ENTm1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm1 Entorhinal area, medial part, dorsal zone, layer 1; +301;2301;50;184;37;#32B825;ENTm2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm2 Entorhinal area, medial part, dorsal zone, layer 2; +302;2302;50;184;37;#32B825;ENTm2a;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm2a Entorhinal area, medial part, dorsal zone, layer 2a; +303;2303;50;184;37;#32B825;ENTm2b;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm2b Entorhinal area, medial part, dorsal zone, layer 2b; +304;2304;50;184;37;#32B825;ENTm3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm3 Entorhinal area, medial part, dorsal zone, layer 3; +305;2305;50;184;37;#32B825;ENTm4;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm4 Entorhinal area, medial part, dorsal zone, layer 4; +306;2306;50;184;37;#32B825;ENTm5;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm5 Entorhinal area, medial part, dorsal zone, layer 5; +307;2307;50;184;37;#32B825;ENTm5-6;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm5-6 Entorhinal area, medial part, dorsal zone, layer 5-6; +308;2308;50;184;37;#32B825;ENTm6;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTm Entorhinal area, medial part, dorsal zone;ENTm6 Entorhinal area, medial part, dorsal zone, layer 6; +309;2309;50;184;37;#32B825;ENTmv;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;; +310;2310;50;184;37;#32B825;ENTmv1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;ENTmv1 Entorhinal area, medial part, ventral zone, layer 1; +311;2311;50;184;37;#32B825;ENTmv2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;ENTmv2 Entorhinal area, medial part, ventral zone, layer 2; +312;2312;50;184;37;#32B825;ENTmv3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;ENTmv3 Entorhinal area, medial part, ventral zone, layer 3; +313;2313;50;184;37;#32B825;ENTmv4;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;ENTmv4 Entorhinal area, medial part, ventral zone, layer 4; +314;2314;50;184;37;#32B825;ENTmv5-6;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ENT Entorhinal area;ENTmv Entorhinal area, medial part, ventral zone;ENTmv5-6 Entorhinal area, medial part, ventral zone, layer 5-6; +607;2607;114;213;105;#72D569;PAR;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PAR Parasubiculum;;; +608;2608;114;213;105;#72D569;PAR1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PAR Parasubiculum;PAR1 Parasubiculum, layer 1;; +609;2609;114;213;105;#72D569;PAR2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PAR Parasubiculum;PAR2 Parasubiculum, layer 2;; +610;2610;114;213;105;#72D569;PAR3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PAR Parasubiculum;PAR3 Parasubiculum, layer 3;; +669;2669;72;200;60;#48C83C;POST;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;POST Postsubiculum;;; +670;2670;72;200;60;#48C83C;POST1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;POST Postsubiculum;POST1 Postsubiculum, layer 1;; +671;2671;72;200;60;#48C83C;POST2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;POST Postsubiculum;POST2 Postsubiculum, layer 2;; +672;2672;72;200;60;#48C83C;POST3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;POST Postsubiculum;POST3 Postsubiculum, layer 3;; +681;2681;89;185;71;#59B947;PRE;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PRE Presubiculum;;; +682;2682;89;185;71;#59B947;PRE1;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PRE Presubiculum;PRE1 Presubiculum, layer 1;; +683;2683;89;185;71;#59B947;PRE2;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PRE Presubiculum;PRE2 Presubiculum, layer 2;; +684;2684;89;185;71;#59B947;PRE3;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;PRE Presubiculum;PRE3 Presubiculum, layer 3;; +909;2909;79;194;68;#4FC244;SUB;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;;; +910;2910;79;194;68;#4FC244;SUBd;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBd Subiculum, dorsal part;; +911;2911;79;194;68;#4FC244;SUBd-m;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBd Subiculum, dorsal part;SUBd-m Subiculum, dorsal part, molecular layer; +912;2912;75;181;71;#4BB547;SUBd-sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBd Subiculum, dorsal part;SUBd-sp Subiculum, dorsal part, pyramidal layer; +913;2913;79;194;68;#4FC244;SUBd-sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBd Subiculum, dorsal part;SUBd-sr Subiculum, dorsal part, stratum radiatum; +914;2914;79;194;68;#4FC244;SUBv;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBv Subiculum, ventral part;; +915;2915;79;194;68;#4FC244;SUBv-m;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBv Subiculum, ventral part;SUBv-m Subiculum, ventral part, molecular layer; +916;2916;75;181;71;#4BB547;SUBv-sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBv Subiculum, ventral part;SUBv-sp Subiculum, ventral part, pyramidal layer; +917;2917;79;194;68;#4FC244;SUBv-sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;SUB Subiculum;SUBv Subiculum, ventral part;SUBv-sr Subiculum, ventral part, stratum radiatum; +738;2738;88;186;72;#56B848;ProS;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;;; +739;2739;88;186;72;#58BA48;ProSd;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSd Prosubiculum, dorsal part;; +740;2740;88;186;72;#58BA48;ProSd-m;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSd Prosubiculum, dorsal part;ProSd-m Prosubiculum, dorsal part, molecular layer; +741;2741;86;184;75;#56B84B;ProSd-sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSd Prosubiculum, dorsal part;ProSd-sp Prosubiculum, dorsal part, pyramidal layer; +742;2742;88;186;72;#58BA48;ProSd-sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSd Prosubiculum, dorsal part;ProSd-sr Prosubiculum, dorsal part, stratum radiatum; +743;2743;88;186;72;#58BA48;ProSv;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSv Prosubiculum, ventral part;; +744;2744;88;186;72;#58BA48;ProSv-m;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSv Prosubiculum, ventral part;ProSv-m Prosubiculum, ventral part, molecular layer; +745;2745;86;184;75;#56B84B;ProSv-sp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSv Prosubiculum, ventral part;ProSv-sp Prosubiculum, ventral part, pyramidal layer; +746;2746;88;186;72;#58BA48;Prosv-sr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;ProS Prosubiculum;ProSv Prosubiculum, ventral part;Prosv-sr Prosubiculum, ventral part, stratum radiatum; +353;2353;51;185;50;#33B932;HATA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;HATA Hippocampo-amygdalar transition area;;; +81;2081;51;185;50;#33B932;APr;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXpl Cortical plate;HPF Hippocampal formation;RHP Retrohippocampal region;APr Area prostriata;;; +221;2221;138;218;135;#8ADA87;CTXsp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;;;;;; +1;2001;138;218;135;#8ADA87;6b;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;6b Layer 6b, isocortex;;;;; +186;2186;138;218;135;#8ADA87;CLA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;CLA Claustrum;;;;; +315;2315;160;238;157;#A0EE9D;EP;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;EP Endopiriform nucleus;;;;; +317;2317;160;238;157;#A0EE9D;EPd;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;EP Endopiriform nucleus;EPd Endopiriform nucleus, dorsal part;;;; +318;2318;160;238;157;#A0EE9D;EPv;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;EP Endopiriform nucleus;EPv Endopiriform nucleus, ventral part;;;; +410;2410;144;235;141;#90EB8D;LA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;LA Lateral amygdalar nucleus;;;;; +123;2123;157;231;156;#9DE79C;BLA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BLA Basolateral amygdalar nucleus;;;;; +124;2124;157;231;156;#9DE79C;BLAa;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BLA Basolateral amygdalar nucleus;BLAa Basolateral amygdalar nucleus, anterior part;;;; +125;2125;157;231;156;#9DE79C;BLAp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BLA Basolateral amygdalar nucleus;BLAp Basolateral amygdalar nucleus, posterior part;;;; +126;2126;157;231;156;#9DE79C;BLAv;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BLA Basolateral amygdalar nucleus;BLAv Basolateral amygdalar nucleus, ventral part;;;; +127;2127;132;234;129;#84EA81;BMA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BMA Basomedial amygdalar nucleus;;;;; +128;2128;132;234;129;#84EA81;BMAa;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BMA Basomedial amygdalar nucleus;BMAa Basomedial amygdalar nucleus, anterior part;;;; +129;2129;132;234;129;#84EA81;BMAp;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;BMA Basomedial amygdalar nucleus;BMAp Basomedial amygdalar nucleus, posterior part;;;; +595;2595;151;236;147;#97EC93;PA;grey Basic cell groups and regions;CH Cerebrum;CTX Cerebral cortex;CTXsp Cortical subplate;PA Posterior amygdalar nucleus;;;;; +190;2190;152;214;249;#98D6F9;CNU;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;;;;;;; +906;2906;152;214;249;#98D6F9;STR;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;;;;;; +907;2907;152;214;249;#98D6F9;STRd;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRd Striatum dorsal region;;;;; +215;2215;152;214;249;#98D6F9;CP;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRd Striatum dorsal region;CP Caudoputamen;;;; +908;2908;128;205;248;#80CDF8;STRv;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;;;;; +22;2022;128;205;248;#80CDF8;ACB;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;ACB Nucleus accumbens;;;; +339;2339;128;205;248;#80CDF8;FS;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;FS Fundus of striatum;;;; +584;2584;128;205;248;#80CDF8;OT;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;;;; +1207;3207;128;205;248;#80CDF8;isl;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;isl Islands of Calleja;;; +1208;3208;128;205;248;#80CDF8;islm;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;islm Major island of Calleja;;; +586;2586;128;205;248;#80CDF8;OT1-3;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;OT1-3 Olfactory tubercle, layers 1-3;;; +585;2585;128;205;248;#80CDF8;OT1;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;OT1 Olfactory tubercle, molecular layer;;; +587;2587;128;205;248;#80CDF8;OT2;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;OT2 Olfactory tubercle, pyramidal layer;;; +588;2588;128;205;248;#80CDF8;OT3;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;OT Olfactory tubercle;OT3 Olfactory tubercle, polymorph layer;;; +437;2437;128;205;248;#80CDF8;LSS;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;STRv Striatum ventral region;LSS Lateral strip of striatum;;;; +438;2438;144;203;237;#90CBED;LSX;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;;;;; +436;2436;144;203;237;#90CBED;LS;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;LS Lateral septal nucleus;;;; +439;2439;144;203;237;#90CBED;LSc;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;LS Lateral septal nucleus;LSc Lateral septal nucleus, caudal (caudodorsal) part;;; +440;2440;144;203;237;#90CBED;LSr;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;LS Lateral septal nucleus;LSr Lateral septal nucleus, rostral (rostroventral) part;;; +441;2441;144;203;237;#90CBED;LSv;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;LS Lateral septal nucleus;LSv Lateral septal nucleus, ventral part;;; +801;2801;144;203;237;#90CBED;SF;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;SF Septofimbrial nucleus;;;; +805;2805;144;203;237;#90CBED;SH;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;LSX Lateral septal complex;SH Septohippocampal nucleus;;;; +1277;3277;128;192;226;#80C0E2;sAMY;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;;;;; +3;2003;128;192;226;#80C0E2;AAA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;AAA Anterior amygdalar area;;;; +121;2121;128;192;226;#80C0E2;BA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;BA Bed nucleus of the accessory olfactory tract;;;; +171;2171;128;192;226;#80C0E2;CEA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;CEA Central amygdalar nucleus;;;; +172;2172;128;192;226;#80C0E2;CEAc;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;CEA Central amygdalar nucleus;CEAc Central amygdalar nucleus, capsular part;;; +173;2173;128;192;226;#80C0E2;CEAl;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;CEA Central amygdalar nucleus;CEAl Central amygdalar nucleus, lateral part;;; +174;2174;128;192;226;#80C0E2;CEAm;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;CEA Central amygdalar nucleus;CEAm Central amygdalar nucleus, medial part;;; +360;2360;128;192;226;#80C0E2;IA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;IA Intercalated amygdalar nucleus;;;; +461;2461;128;192;226;#80C0E2;MEA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;;;; +462;2462;128;192;226;#80C0E2;MEAad;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEAad Medial amygdalar nucleus, anterodorsal part;;; +463;2463;128;192;226;#80C0E2;MEAav;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEAav Medial amygdalar nucleus, anteroventral part;;; +464;2464;128;192;226;#80C0E2;MEApd;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEApd Medial amygdalar nucleus, posterodorsal part;;; +465;2465;128;192;226;#80C0E2;MEApd-a;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEApd Medial amygdalar nucleus, posterodorsal part;MEApd-a Medial amygdalar nucleus, posterodorsal part, sublayer a;; +466;2466;128;192;226;#80C0E2;MEApd-b;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEApd Medial amygdalar nucleus, posterodorsal part;MEApd-b Medial amygdalar nucleus, posterodorsal part, sublayer b;; +467;2467;128;192;226;#80C0E2;MEApd-c;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEApd Medial amygdalar nucleus, posterodorsal part;MEApd-c Medial amygdalar nucleus, posterodorsal part, sublayer c;; +468;2468;128;192;226;#80C0E2;MEApv;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;STR Striatum;sAMY Striatum-like amygdalar nuclei;MEA Medial amygdalar nucleus;MEApv Medial amygdalar nucleus, posteroventral part;;; +602;2602;133;153;204;#8599CC;PAL;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;;;;;; +604;2604;133;153;204;#8599CC;PALd;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALd Pallidum, dorsal region;;;;; +342;2342;133;153;204;#8599CC;GPe;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALd Pallidum, dorsal region;GPe Globus pallidus, external segment;;;; +343;2343;133;153;204;#8599CC;GPi;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALd Pallidum, dorsal region;GPi Globus pallidus, internal segment;;;; +606;2606;162;177;216;#A2B1D8;PALv;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALv Pallidum, ventral region;;;;; +806;2806;162;177;216;#A2B1D8;SI;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALv Pallidum, ventral region;SI Substantia innominata;;;; +445;2445;162;177;216;#A2B1D8;MA;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALv Pallidum, ventral region;MA Magnocellular nucleus;;;; +605;2605;150;167;211;#96A7D3;PALm;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALm Pallidum, medial region;;;;; +519;2519;150;167;211;#96A7D3;MSC;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALm Pallidum, medial region;MSC Medial septal complex;;;; +518;2518;150;167;211;#96A7D3;MS;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALm Pallidum, medial region;MSC Medial septal complex;MS Medial septal nucleus;;; +530;2530;150;167;211;#96A7D3;NDB;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALm Pallidum, medial region;MSC Medial septal complex;NDB Diagonal band nucleus;;; +942;2942;150;167;211;#96A7D3;TRS;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALm Pallidum, medial region;TRS Triangular nucleus of septum;;;; +603;2603;179;192;223;#B3C0DF;PALc;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;;;;; +131;2131;179;192;223;#B3C0DF;BST;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;;;; +132;2132;179;192;223;#B3C0DF;BSTa;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;;; +133;2133;179;192;223;#B3C0DF;BSTal;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTal Bed nuclei of the stria terminalis, anterior division, anterolateral area;; +134;2134;179;192;223;#B3C0DF;BSTam;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTam Bed nuclei of the stria terminalis, anterior division, anteromedial area;; +136;2136;179;192;223;#B3C0DF;BSTdm;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTdm Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus;; +137;2137;179;192;223;#B3C0DF;BSTfu;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTfu Bed nuclei of the stria terminalis, anterior division, fusiform nucleus;; +139;2139;179;192;223;#B3C0DF;BSTju;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTju Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus;; +140;2140;179;192;223;#B3C0DF;BSTmg;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTmg Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus;; +141;2141;179;192;223;#B3C0DF;BSTov;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTov Bed nuclei of the stria terminalis, anterior division, oval nucleus;; +144;2144;179;192;223;#B3C0DF;BSTrh;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTrh Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus;; +147;2147;179;192;223;#B3C0DF;BSTv;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTa Bed nuclei of the stria terminalis, anterior division;BSTv Bed nuclei of the stria terminalis, anterior division, ventral nucleus;; +142;2142;179;192;223;#B3C0DF;BSTp;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;;; +135;2135;179;192;223;#B3C0DF;BSTd;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;BSTd Bed nuclei of the stria terminalis, posterior division, dorsal nucleus;; +143;2143;179;192;223;#B3C0DF;BSTpr;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;BSTpr Bed nuclei of the stria terminalis, posterior division, principal nucleus;; +138;2138;179;192;223;#B3C0DF;BSTif;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;BSTif Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus;; +146;2146;179;192;223;#B3C0DF;BSTtr;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;BSTtr Bed nuclei of the stria terminalis, posterior division, transverse nucleus;; +145;2145;179;192;223;#B3C0DF;BSTse;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BST Bed nuclei of the stria terminalis;BSTp Bed nuclei of the stria terminalis, posterior division;BSTse Bed nuclei of the stria terminalis, posterior division, strial extension;; +122;2122;179;192;223;#B3C0DF;BAC;grey Basic cell groups and regions;CH Cerebrum;CNU Cerebral nuclei;PAL Pallidum;PALc Pallidum, caudal region;BAC Bed nucleus of the anterior commissure;;;; +130;2130;255;112;128;#FF7080;BS;grey Basic cell groups and regions;BS Brain stem;;;;;;;; +363;2363;255;112;128;#FF7080;IB;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;;;;;;; +932;2932;255;112;128;#FF7080;TH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;;;;;; +267;2267;255;128;132;#FF8084;DORsm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;;;;; +966;2966;255;128;132;#FF8084;VENT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;;;; +964;2964;255;128;132;#FF8084;VAL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VAL Ventral anterior-lateral complex of the thalamus;;; +1094;3094;255;128;132;#FF8084;VM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VM Ventral medial nucleus of the thalamus;;; +1102;3102;255;128;132;#FF8084;VP;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VP Ventral posterior complex of the thalamus;;; +1103;3103;255;128;132;#FF8084;VPL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VP Ventral posterior complex of the thalamus;VPL Ventral posterolateral nucleus of the thalamus;; +1104;3104;255;128;132;#FF8084;VPLpc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VP Ventral posterior complex of the thalamus;VPLpc Ventral posterolateral nucleus of the thalamus, parvicellular part;; +1105;3105;255;128;132;#FF8084;VPM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VP Ventral posterior complex of the thalamus;VPM Ventral posteromedial nucleus of the thalamus;; +1106;3106;255;128;132;#FF8084;VPMpc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;VP Ventral posterior complex of the thalamus;VPMpc Ventral posteromedial nucleus of the thalamus, parvicellular part;; +737;2737;255;128;132;#FF8084;PoT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;VENT Ventral group of the dorsal thalamus;PoT Posterior triangular thalamic nucleus;;; +822;2822;255;128;132;#FF8084;SPF;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;SPF Subparafascicular nucleus;;;; +823;2823;255;128;132;#FF8084;SPFm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;SPF Subparafascicular nucleus;SPFm Subparafascicular nucleus, magnocellular part;;; +824;2824;255;128;132;#FF8084;SPFp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;SPF Subparafascicular nucleus;SPFp Subparafascicular nucleus, parvicellular part;;; +821;2821;255;128;132;#FF8084;SPA;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;SPA Subparafascicular area;;;; +673;2673;255;128;132;#FF8084;PP;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;PP Peripeduncular nucleus;;;; +340;2340;255;128;132;#FF8084;GENd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;;;; +473;2473;255;128;132;#FF8084;MG;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;MG Medial geniculate complex;;; +474;2474;255;128;132;#FF8084;MGd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;MG Medial geniculate complex;MGd Medial geniculate complex, dorsal part;; +476;2476;255;128;132;#FF8084;MGv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;MG Medial geniculate complex;MGv Medial geniculate complex, ventral part;; +475;2475;255;128;132;#FF8084;MGm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;MG Medial geniculate complex;MGm Medial geniculate complex, medial part;; +416;2416;255;128;132;#FF8084;LGd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;LGd Dorsal part of the lateral geniculate complex;;; +419;2419;255;128;132;#FF8084;LGd-sh;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;LGd Dorsal part of the lateral geniculate complex;LGd-sh Dorsal part of the lateral geniculate complex, shell;; +417;2417;255;128;132;#FF8084;LGd-co;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;LGd Dorsal part of the lateral geniculate complex;LGd-co Dorsal part of the lateral geniculate complex, core;; +418;2418;255;128;132;#FF8084;LGd-ip;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORsm Thalamus, sensory-motor cortex related;GENd Geniculate group, dorsal thalamus;LGd Dorsal part of the lateral geniculate complex;LGd-ip Dorsal part of the lateral geniculate complex, ipsilateral zone;; +266;2266;255;144;159;#FF909F;DORpm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;;;;; +411;2411;255;144;159;#FF909F;LAT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;;;; +431;2431;255;144;159;#FF909F;LP;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;LP Lateral posterior nucleus of the thalamus;;; +666;2666;255;144;159;#FF909F;PO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;PO Posterior complex of the thalamus;;; +667;2667;255;144;159;#FF909F;POL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;POL Posterior limiting nucleus of the thalamus;;; +804;2804;255;144;159;#FF909F;SGN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;SGN Suprageniculate nucleus;;; +321;2321;255;144;159;#FF909F;Eth;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;Eth Ethmoid nucleus of the thalamus;;; +751;2751;255;144;159;#FF909F;REth;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;LAT Lateral group of the dorsal thalamus;REth Retroethmoid nucleus;;; +86;2086;255;144;159;#FF909F;ATN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;;;; +116;2116;255;144;159;#FF909F;AV;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;AV Anteroventral nucleus of thalamus;;; +52;2052;255;144;159;#FF909F;AM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;AM Anteromedial nucleus;;; +56;2056;255;144;159;#FF909F;AMd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;AM Anteromedial nucleus;AMd Anteromedial nucleus, dorsal part;; +57;2057;255;144;159;#FF909F;AMv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;AM Anteromedial nucleus;AMv Anteromedial nucleus, ventral part;; +25;2025;255;144;159;#FF909F;AD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;AD Anterodorsal nucleus;;; +362;2362;255;144;159;#FF909F;IAM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;IAM Interanteromedial nucleus of the thalamus;;; +361;2361;255;144;159;#FF909F;IAD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;IAD Interanterodorsal nucleus of the thalamus;;; +414;2414;255;144;159;#FF909F;LD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ATN Anterior group of the dorsal thalamus;LD Lateral dorsal nucleus of thalamus;;; +469;2469;255;144;159;#FF909F;MED;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;;;; +383;2383;255;144;159;#FF909F;IMD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;IMD Intermediodorsal nucleus of the thalamus;;; +453;2453;255;144;159;#FF909F;MD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;MD Mediodorsal nucleus of thalamus;;; +457;2457;255;144;159;#FF909F;MDc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;MD Mediodorsal nucleus of thalamus;MDc Mediodorsal nucleus of the thalamus, central part;; +458;2458;255;144;159;#FF909F;MDl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;MD Mediodorsal nucleus of thalamus;MDl Mediodorsal nucleus of the thalamus, lateral part;; +459;2459;255;144;159;#FF909F;MDm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;MD Mediodorsal nucleus of thalamus;MDm Mediodorsal nucleus of the thalamus, medial part;; +813;2813;255;144;159;#FF909F;SMT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;SMT Submedial nucleus of the thalamus;;; +679;2679;255;144;159;#FF909F;PR;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MED Medial group of the dorsal thalamus;PR Perireunensis nucleus;;; +521;2521;255;144;159;#FF909F;MTN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MTN Midline group of the dorsal thalamus;;;; +724;2724;255;144;159;#FF909F;PVT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MTN Midline group of the dorsal thalamus;PVT Paraventricular nucleus of the thalamus;;; +699;2699;255;144;159;#FF909F;PT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MTN Midline group of the dorsal thalamus;PT Parataenial nucleus;;; +750;2750;255;144;159;#FF909F;RE;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MTN Midline group of the dorsal thalamus;RE Nucleus of reuniens;;; +1115;3115;255;144;159;#FF909F;Xi;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;MTN Midline group of the dorsal thalamus;Xi Xiphoid thalamic nucleus;;; +382;2382;255;144;159;#FF909F;ILM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;;;; +752;2752;255;144;159;#FF909F;RH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;RH Rhomboid nucleus;;; +188;2188;255;144;159;#FF909F;CM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;CM Central medial nucleus of the thalamus;;; +627;2627;255;144;159;#FF909F;PCN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;PCN Paracentral nucleus;;; +185;2185;255;144;159;#FF909F;CL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;CL Central lateral nucleus of the thalamus;;; +636;2636;255;144;159;#FF909F;PF;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;PF Parafascicular nucleus;;; +647;2647;255;144;159;#FF909F;PIL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;ILM Intralaminar nuclei of the dorsal thalamus;PIL Posterior intralaminar thalamic nucleus;;; +783;2783;255;144;159;#FF909F;RT;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;RT Reticular nucleus of the thalamus;;;; +341;2341;255;144;159;#FF909F;GENv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;;;; +371;2371;255;144;159;#FF909F;IGL;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;IGL Intergeniculate leaflet of the lateral geniculate complex;;; +407;2407;255;144;159;#FF909F;IntG;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;IntG Intermediate geniculate nucleus;;; +420;2420;255;144;159;#FF909F;LGv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;LGv Ventral part of the lateral geniculate complex;;; +421;2421;255;144;159;#FF909F;LGvl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;LGv Ventral part of the lateral geniculate complex;LGvl Ventral part of the lateral geniculate complex, lateral zone;; +422;2422;255;144;159;#FF909F;LGvm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;LGv Ventral part of the lateral geniculate complex;LGvm Ventral part of the lateral geniculate complex, medial zone;; +924;2924;255;144;159;#FF909F;SubG;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;GENv Geniculate group, ventral thalamus;SubG Subgeniculate nucleus;;; +316;2316;255;144;159;#FF909F;EPI;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;EPI Epithalamus;;;; +477;2477;255;144;159;#FF909F;MH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;EPI Epithalamus;MH Medial habenula;;; +423;2423;255;144;159;#FF909F;LH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;EPI Epithalamus;LH Lateral habenula;;; +648;2648;255;144;159;#FF909F;PIN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;TH Thalamus;DORpm Thalamus, polymodal association cortex related;EPI Epithalamus;PIN Pineal body;;; +358;2358;230;68;56;#E64438;HY;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;;;;;; +725;2725;255;93;80;#FF5D50;PVZ;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;;;;; +817;2817;255;93;80;#FF5D50;SO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;SO Supraoptic nucleus;;;; +84;2084;255;93;80;#FF5D50;ASO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;ASO Accessory supraoptic group;;;; +528;2528;255;93;80;#FF5D50;NC;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;ASO Accessory supraoptic group;NC Nucleus circularis;;; +707;2707;255;93;80;#FF5D50;PVH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;;;; +714;2714;255;93;80;#FF5D50;PVHm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;;; +708;2708;255;93;80;#FF5D50;PVHam;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;PVHam Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part;; +715;2715;255;93;80;#FF5D50;PVHmm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;PVHmm Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part;; +719;2719;255;93;80;#FF5D50;PVHpm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;PVHpm Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part;; +720;2720;255;93;80;#FF5D50;PVHpml;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;PVHpm Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part;PVHpml Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone; +721;2721;255;93;80;#FF5D50;PVHpmm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHm Paraventricular hypothalamic nucleus, magnocellular division;PVHpm Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part;PVHpmm Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone; +718;2718;255;93;80;#FF5D50;PVHp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHp Paraventricular hypothalamic nucleus, parvicellular division;;; +709;2709;255;93;80;#FF5D50;PVHap;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHp Paraventricular hypothalamic nucleus, parvicellular division;PVHap Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part;; +716;2716;255;93;80;#FF5D50;PVHmpd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHp Paraventricular hypothalamic nucleus, parvicellular division;PVHmpd Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone;; +722;2722;255;93;80;#FF5D50;PVHpv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVH Paraventricular hypothalamic nucleus;PVHp Paraventricular hypothalamic nucleus, parvicellular division;PVHpv Paraventricular hypothalamic nucleus, parvicellular division, periventricular part;; +726;2726;255;93;80;#FF5D50;PVa;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVa Periventricular hypothalamic nucleus, anterior part;;;; +727;2727;255;93;80;#FF5D50;PVi;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;PVi Periventricular hypothalamic nucleus, intermediate part;;;; +83;2083;255;93;80;#FF5D50;ARH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVZ Periventricular zone;ARH Arcuate hypothalamic nucleus;;;; +723;2723;255;85;71;#FF5547;PVR;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;;;;; +26;2026;255;85;71;#FF5547;ADP;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;ADP Anterodorsal preoptic nucleus;;;; +27;2027;255;85;71;#FF5547;AHA;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;AHA Anterior hypothalamic area;;;; +117;2117;255;85;71;#FF5547;AVP;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;AVP Anteroventral preoptic nucleus;;;; +118;2118;255;85;71;#FF5547;AVPV;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;AVPV Anteroventral periventricular nucleus;;;; +260;2260;255;85;71;#FF5547;DMH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;DMH Dorsomedial nucleus of the hypothalamus;;;; +261;2261;255;85;71;#FF5547;DMHa;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;DMH Dorsomedial nucleus of the hypothalamus;DMHa Dorsomedial nucleus of the hypothalamus, anterior part;;; +262;2262;255;85;71;#FF5547;DMHp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;DMH Dorsomedial nucleus of the hypothalamus;DMHp Dorsomedial nucleus of the hypothalamus, posterior part;;; +263;2263;255;85;71;#FF5547;DMHv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;DMH Dorsomedial nucleus of the hypothalamus;DMHv Dorsomedial nucleus of the hypothalamus, ventral part;;; +470;2470;255;85;71;#FF5547;MEPO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;MEPO Median preoptic nucleus;;;; +512;2512;255;85;71;#FF5547;MPO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;MPO Medial preoptic area;;;; +589;2589;255;85;71;#FF5547;OV;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;OV Vascular organ of the lamina terminalis;;;; +628;2628;255;85;71;#FF5547;PD;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;PD Posterodorsal preoptic nucleus;;;; +694;2694;255;85;71;#FF5547;PS;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;PS Parastrial nucleus;;;; +695;2695;255;85;71;#FF5547;PSCH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;PSCH Suprachiasmatic preoptic nucleus;;;; +728;2728;255;85;71;#FF5547;PVp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;PVp Periventricular hypothalamic nucleus, posterior part;;;; +729;2729;255;85;71;#FF5547;PVpo;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;PVpo Periventricular hypothalamic nucleus, preoptic part;;;; +785;2785;255;85;71;#FF5547;SBPV;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;SBPV Subparaventricular zone;;;; +786;2786;255;85;71;#FF5547;SCH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;SCH Suprachiasmatic nucleus;;;; +802;2802;255;85;71;#FF5547;SFO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;SFO Subfornical organ;;;; +1100;3100;255;85;71;#FF5547;VMPO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;VMPO Ventromedial preoptic nucleus;;;; +1093;3093;255;85;71;#FF5547;VLPO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;PVR Periventricular region;VLPO Ventrolateral preoptic nucleus;;;; +472;2472;255;76;62;#FF4C3E;MEZ;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;;;;; +28;2028;255;76;62;#FF4C3E;AHN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;AHN Anterior hypothalamic nucleus;;;; +29;2029;255;76;62;#FF4C3E;AHNa;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;AHN Anterior hypothalamic nucleus;AHNa Anterior hypothalamic nucleus, anterior part;;; +30;2030;255;76;62;#FF4C3E;AHNc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;AHN Anterior hypothalamic nucleus;AHNc Anterior hypothalamic nucleus, central part;;; +31;2031;255;76;62;#FF4C3E;AHNd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;AHN Anterior hypothalamic nucleus;AHNd Anterior hypothalamic nucleus, dorsal part;;; +32;2032;255;76;62;#FF4C3E;AHNp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;AHN Anterior hypothalamic nucleus;AHNp Anterior hypothalamic nucleus, posterior part;;; +449;2449;255;76;62;#FF4C3E;MBO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;;;; +430;2430;255;76;62;#FF4C3E;LM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;LM Lateral mammillary nucleus;;; +478;2478;255;76;62;#FF4C3E;MM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;;; +482;2482;255;76;62;#FF4C3E;MMme;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;MMme Medial mammillary nucleus, median part;; +480;2480;255;76;62;#FF4C3E;MMl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;MMl Medial mammillary nucleus, lateral part;; +481;2481;255;76;62;#FF4C3E;MMm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;MMm Medial mammillary nucleus, medial part;; +483;2483;255;76;62;#FF4C3E;MMp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;MMp Medial mammillary nucleus, posterior part;; +479;2479;255;76;62;#FF4C3E;MMd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;MM Medial mammillary nucleus;MMd Medial mammillary nucleus, dorsal part;; +918;2918;255;76;62;#FF4C3E;SUM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;SUM Supramammillary nucleus;;; +919;2919;255;76;62;#FF4C3E;SUMl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;SUM Supramammillary nucleus;SUMl Supramammillary nucleus, lateral part;; +920;2920;255;76;62;#FF4C3E;SUMm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;SUM Supramammillary nucleus;SUMm Supramammillary nucleus, medial part;; +933;2933;255;76;62;#FF4C3E;TM;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;TM Tuberomammillary nucleus;;; +934;2934;255;76;62;#FF4C3E;TMd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;TM Tuberomammillary nucleus;TMd Tuberomammillary nucleus, dorsal part;; +935;2935;255;76;62;#FF4C3E;TMv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MBO Mammillary body;TM Tuberomammillary nucleus;TMv Tuberomammillary nucleus, ventral part;; +508;2508;255;76;62;#FF4C3E;MPN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MPN Medial preoptic nucleus;;;; +509;2509;255;76;62;#FF4C3E;MPNc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MPN Medial preoptic nucleus;MPNc Medial preoptic nucleus, central part;;; +510;2510;255;76;62;#FF4C3E;MPNl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MPN Medial preoptic nucleus;MPNl Medial preoptic nucleus, lateral part;;; +511;2511;255;76;62;#FF4C3E;MPNm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;MPN Medial preoptic nucleus;MPNm Medial preoptic nucleus, medial part;;; +663;2663;255;76;62;#FF4C3E;PMd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PMd Dorsal premammillary nucleus;;;; +664;2664;255;76;62;#FF4C3E;PMv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PMv Ventral premammillary nucleus;;;; +710;2710;255;76;62;#FF4C3E;PVHd;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PVHd Paraventricular hypothalamic nucleus, descending division;;;; +711;2711;255;76;62;#FF4C3E;PVHdp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PVHd Paraventricular hypothalamic nucleus, descending division;PVHdp Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part;;; +712;2712;255;76;62;#FF4C3E;PVHf;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PVHd Paraventricular hypothalamic nucleus, descending division;PVHf Paraventricular hypothalamic nucleus, descending division, forniceal part;;; +713;2713;255;76;62;#FF4C3E;PVHlp;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PVHd Paraventricular hypothalamic nucleus, descending division;PVHlp Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part;;; +717;2717;255;76;62;#FF4C3E;PVHmpv;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PVHd Paraventricular hypothalamic nucleus, descending division;PVHmpv Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone;;; +1095;3095;255;76;62;#FF4C3E;VMH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;VMH Ventromedial hypothalamic nucleus;;;; +1096;3096;255;76;62;#FF4C3E;VMHa;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;VMH Ventromedial hypothalamic nucleus;VMHa Ventromedial hypothalamic nucleus, anterior part;;; +1097;3097;255;76;62;#FF4C3E;VMHc;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;VMH Ventromedial hypothalamic nucleus;VMHc Ventromedial hypothalamic nucleus, central part;;; +1098;3098;255;76;62;#FF4C3E;VMHdm;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;VMH Ventromedial hypothalamic nucleus;VMHdm Ventromedial hypothalamic nucleus, dorsomedial part;;; +1099;3099;255;76;62;#FF4C3E;VMHvl;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;VMH Ventromedial hypothalamic nucleus;VMHvl Ventromedial hypothalamic nucleus, ventrolateral part;;; +645;2645;255;76;62;#FF4C3E;PH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;MEZ Hypothalamic medial zone;PH Posterior hypothalamic nucleus;;;; +444;2444;242;72;59;#F2483B;LZ;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;;;;; +424;2424;242;72;59;#F2483B;LHA;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;LHA Lateral hypothalamic area;;;; +432;2432;242;72;59;#F2483B;LPO;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;LPO Lateral preoptic area;;;; +696;2696;242;72;59;#F2483B;PST;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;PST Preparasubthalamic nucleus;;;; +697;2697;242;72;59;#F2483B;PSTN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;PSTN Parasubthalamic nucleus;;;; +736;2736;242;72;59;#F2483B;PeF;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;PeF Perifornical nucleus;;;; +749;2749;242;72;59;#F2483B;RCH;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;RCH Retrochiasmatic area;;;; +905;2905;242;72;59;#F2483B;STN;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;STN Subthalamic nucleus;;;; +955;2955;242;72;59;#F2483B;TU;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;TU Tuberal nucleus;;;; +1117;3117;242;72;59;#F2483B;ZI;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;ZI Zona incerta;;;; +2;2002;242;72;59;#F2483B;A13;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;ZI Zona incerta;A13 Dopaminergic A13 group;;; +323;2323;242;72;59;#F2483B;FF;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;LZ Hypothalamic lateral zone;ZI Zona incerta;FF Fields of Forel;;; +460;2460;242;72;59;#F2483B;ME;grey Basic cell groups and regions;BS Brain stem;IB Interbrain;HY Hypothalamus;ME Median eminence;;;;; +448;2448;255;100;255;#FF64FF;MB;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;;;;;;; +451;2451;255;122;255;#FF7AFF;MBsen;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;;;;;; +797;2797;255;122;255;#FF7AFF;SCs;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SCs Superior colliculus, sensory related;;;;; +796;2796;255;122;255;#FF7AFF;SCop;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SCs Superior colliculus, sensory related;SCop Superior colliculus, optic layer;;;; +798;2798;255;122;255;#FF7AFF;SCsg;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SCs Superior colliculus, sensory related;SCsg Superior colliculus, superficial gray layer;;;; +799;2799;255;122;255;#FF7AFF;SCzo;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SCs Superior colliculus, sensory related;SCzo Superior colliculus, zonal layer;;;; +364;2364;255;122;255;#FF7AFF;IC;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;IC Inferior colliculus;;;;; +366;2366;255;122;255;#FF7AFF;ICc;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;IC Inferior colliculus;ICc Inferior colliculus, central nucleus;;;; +367;2367;255;122;255;#FF7AFF;ICd;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;IC Inferior colliculus;ICd Inferior colliculus, dorsal nucleus;;;; +368;2368;255;122;255;#FF7AFF;ICe;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;IC Inferior colliculus;ICe Inferior colliculus, external nucleus;;;; +527;2527;255;122;255;#FF7AFF;NB;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;NB Nucleus of the brachium of the inferior colliculus;;;;; +784;2784;255;122;255;#FF7AFF;SAG;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SAG Nucleus sagulum;;;;; +614;2614;255;122;255;#FF7AFF;PBG;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;PBG Parabigeminal nucleus;;;;; +471;2471;255;122;255;#FF7AFF;MEV;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;MEV Midbrain trigeminal nucleus;;;;; +787;2787;255;122;255;#FF7AFF;SCO;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsen Midbrain, sensory related;SCO Subcommissural organ;;;;; +450;2450;255;144;255;#FF90FF;MBmot;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;;;;;; +816;2816;255;144;255;#FF90FF;SNr;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SNr Substantia nigra, reticular part;;;;; +1108;3108;255;144;255;#FF90FF;VTA;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;VTA Ventral tegmental area;;;;; +665;2665;255;144;255;#FF90FF;PN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PN Paranigral nucleus;;;;; +761;2761;255;144;255;#FF90FF;RR;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;RR Midbrain reticular nucleus, retrorubral area;;;;; +514;2514;255;144;255;#FF90FF;MRN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MRN Midbrain reticular nucleus;;;;; +515;2515;255;144;255;#FF90FF;MRNm;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MRN Midbrain reticular nucleus;MRNm Midbrain reticular nucleus, magnocellular part;;;; +516;2516;255;144;255;#FF90FF;MRNmg;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MRN Midbrain reticular nucleus;MRNmg Midbrain reticular nucleus, magnocellular part, general;;;; +517;2517;255;144;255;#FF90FF;MRNp;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MRN Midbrain reticular nucleus;MRNp Midbrain reticular nucleus, parvicellular part;;;; +795;2795;255;144;255;#FF90FF;SCm;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;;;;; +788;2788;255;144;255;#FF90FF;SCdg;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCdg Superior colliculus, motor related, deep gray layer;;;; +789;2789;255;144;255;#FF90FF;SCdw;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCdw Superior colliculus, motor related, deep white layer;;;; +794;2794;255;144;255;#FF90FF;SCiw;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCiw Superior colliculus, motor related, intermediate white layer;;;; +790;2790;255;144;255;#FF90FF;SCig;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCig Superior colliculus, motor related, intermediate gray layer;;;; +791;2791;255;144;255;#FF90FF;SCig-a;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCig Superior colliculus, motor related, intermediate gray layer;SCig-a Superior colliculus, motor related, intermediate gray layer, sublayer a;;; +792;2792;255;144;255;#FF90FF;SCig-b;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCig Superior colliculus, motor related, intermediate gray layer;SCig-b Superior colliculus, motor related, intermediate gray layer, sublayer b;;; +793;2793;255;144;255;#FF90FF;SCig-c;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SCm Superior colliculus, motor related;SCig Superior colliculus, motor related, intermediate gray layer;SCig-c Superior colliculus, motor related, intermediate gray layer, sublayer c;;; +601;2601;255;144;255;#FF90FF;PAG;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PAG Periaqueductal gray;;;;; +680;2680;255;144;255;#FF90FF;PRC;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PAG Periaqueductal gray;PRC Precommissural nucleus;;;; +384;2384;255;144;255;#FF90FF;INC;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PAG Periaqueductal gray;INC Interstitial nucleus of Cajal;;;; +529;2529;255;144;255;#FF90FF;ND;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PAG Periaqueductal gray;ND Nucleus of Darkschewitsch;;;; +923;2923;255;144;255;#FF90FF;Su3;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PAG Periaqueductal gray;Su3 Supraoculomotor periaqueductal gray;;;; +693;2693;255;144;255;#FF90FF;PRT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;;;;; +80;2080;255;144;255;#FF90FF;APN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;APN Anterior pretectal nucleus;;;; +513;2513;255;144;255;#FF90FF;MPT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;MPT Medial pretectal area;;;; +546;2546;255;144;255;#FF90FF;NOT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;NOT Nucleus of the optic tract;;;; +547;2547;255;144;255;#FF90FF;NPC;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;NPC Nucleus of the posterior commissure;;;; +557;2557;255;144;255;#FF90FF;OP;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;OP Olivary pretectal nucleus;;;; +675;2675;255;144;255;#FF90FF;PPT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;PPT Posterior pretectal nucleus;;;; +759;2759;255;144;255;#FF90FF;RPF;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;PRT Pretectal region;RPF Retroparafascicular nucleus;;;; +406;2406;255;144;255;#FF90FF;InCo;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;InCo Intercollicular nucleus;;;;; +236;2236;255;144;255;#FF90FF;CUN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;CUN Cuneiform nucleus;;;;; +756;2756;255;144;255;#FF90FF;RN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;RN Red nucleus;;;;; +372;2372;255;144;255;#FF90FF;III;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;III Oculomotor nucleus;;;;; +446;2446;255;144;255;#FF90FF;MA3;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MA3 Medial accesory oculomotor nucleus;;;;; +320;2320;255;144;255;#FF90FF;EW;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;EW Edinger-Westphal nucleus;;;;; +400;2400;255;144;255;#FF90FF;IV;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;IV Trochlear nucleus;;;;; +734;2734;255;144;255;#FF90FF;Pa4;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;Pa4 Paratrochlear nucleus;;;;; +1109;3109;255;144;255;#FF90FF;VTN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;VTN Ventral tegmental nucleus;;;;; +85;2085;255;144;255;#FF90FF;AT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;AT Anterior tegmental nucleus;;;;; +442;2442;255;144;255;#FF90FF;LT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;LT Lateral terminal nucleus of the accessory optic tract;;;;; +275;2275;255;144;255;#FF90FF;DT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;DT Dorsal terminal nucleus of the accessory optic tract;;;;; +520;2520;255;144;255;#FF90FF;MT;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;MT Medial terminal nucleus of the accessory optic tract;;;;; +815;2815;255;144;255;#FF90FF;SNl;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBmot Midbrain, motor related;SNl Substantia nigra, lateral part;;;;; +452;2452;255;144;255;#FF90FF;MBsta;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;;;;;; +814;2814;255;166;255;#FFA6FF;SNc;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;SNc Substantia nigra, compact part;;;;; +674;2674;255;166;255;#FFA6FF;PPN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;PPN Pedunculopontine nucleus;;;;; +747;2747;255;166;255;#FFA6FF;RAmb;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;;;;; +369;2369;255;166;255;#FFA6FF;IF;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IF Interfascicular nucleus raphe;;;; +395;2395;255;166;255;#FFA6FF;IPN;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;;;; +396;2396;255;166;255;#FFA6FF;IPR;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPR Interpeduncular nucleus, rostral;;; +389;2389;255;166;255;#FFA6FF;IPC;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPC Interpeduncular nucleus, caudal;;; +388;2388;255;166;255;#FFA6FF;IPA;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPA Interpeduncular nucleus, apical;;; +394;2394;255;166;255;#FFA6FF;IPL;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPL Interpeduncular nucleus, lateral;;; +393;2393;255;166;255;#FFA6FF;IPI;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPI Interpeduncular nucleus, intermediate;;; +391;2391;255;166;255;#FFA6FF;IPDM;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPDM Interpeduncular nucleus, dorsomedial;;; +390;2390;255;166;255;#FFA6FF;IPDL;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPDL Interpeduncular nucleus, dorsolateral;;; +397;2397;255;166;255;#FFA6FF;IPRL;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;IPN Interpeduncular nucleus;IPRL Interpeduncular nucleus, rostrolateral;;; +754;2754;255;166;255;#FFA6FF;RL;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;RL Rostral linear nucleus raphe;;;; +187;2187;255;166;255;#FFA6FF;CLI;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;CLI Central linear nucleus raphe;;;; +274;2274;255;166;255;#FFA6FF;DR;grey Basic cell groups and regions;BS Brain stem;MB Midbrain;MBsta Midbrain, behavioral state related;RAmb Midbrain raphe nuclei;DR Dorsal nucleus raphe;;;; +354;2354;255;155;136;#FF9B88;HB;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;;;;;;; +590;2590;255;155;136;#FF9B88;P;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;;;;;; +593;2593;255;174;111;#FFAE6F;P-sen;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;;;;; +533;2533;255;174;111;#FFAE6F;NLL;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;NLL Nucleus of the lateral lemniscus;;;; +534;2534;255;174;111;#FFAE6F;NLLd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;NLL Nucleus of the lateral lemniscus;NLLd Nucleus of the lateral lemniscus, dorsal part;;; +535;2535;255;174;111;#FFAE6F;NLLh;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;NLL Nucleus of the lateral lemniscus;NLLh Nucleus of the lateral lemniscus, horizontal part;;; +536;2536;255;174;111;#FFAE6F;NLLv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;NLL Nucleus of the lateral lemniscus;NLLv Nucleus of the lateral lemniscus, ventral part;;; +698;2698;255;174;111;#FFAE6F;PSV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PSV Principal sensory nucleus of the trigeminal;;;; +613;2613;255;174;111;#FFAE6F;PB;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;;;; +409;2409;255;174;111;#FFAE6F;KF;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;KF Koelliker-Fuse subnucleus;;; +615;2615;255;174;111;#FFAE6F;PBl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;;; +616;2616;255;174;111;#FFAE6F;PBlc;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;PBlc Parabrachial nucleus, lateral division, central lateral part;; +617;2617;255;174;111;#FFAE6F;PBld;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;PBld Parabrachial nucleus, lateral division, dorsal lateral part;; +618;2618;255;174;111;#FFAE6F;PBle;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;PBle Parabrachial nucleus, lateral division, external lateral part;; +619;2619;255;174;111;#FFAE6F;PBls;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;PBls Parabrachial nucleus, lateral division, superior lateral part;; +620;2620;255;174;111;#FFAE6F;PBlv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBl Parabrachial nucleus, lateral division;PBlv Parabrachial nucleus, lateral division, ventral lateral part;; +621;2621;255;174;111;#FFAE6F;PBm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBm Parabrachial nucleus, medial division;;; +622;2622;255;174;111;#FFAE6F;PBme;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBm Parabrachial nucleus, medial division;PBme Parabrachial nucleus, medial division, external medial part;; +623;2623;255;174;111;#FFAE6F;PBmm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBm Parabrachial nucleus, medial division;PBmm Parabrachial nucleus, medial division, medial medial part;; +624;2624;255;174;111;#FFAE6F;PBmv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;PB Parabrachial nucleus;PBm Parabrachial nucleus, medial division;PBmv Parabrachial nucleus, medial division, ventral medial part;; +818;2818;255;174;111;#FFAE6F;SOC;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;SOC Superior olivary complex;;;; +668;2668;255;174;111;#FFAE6F;POR;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;SOC Superior olivary complex;POR Superior olivary complex, periolivary region;;; +820;2820;255;174;111;#FFAE6F;SOCm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;SOC Superior olivary complex;SOCm Superior olivary complex, medial part;;; +819;2819;255;174;111;#FFAE6F;SOCl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sen Pons, sensory related;SOC Superior olivary complex;SOCl Superior olivary complex, lateral part;;; +591;2591;255;186;134;#FFBA86;P-mot;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;;;;; +120;2120;255;186;134;#FFBA86;B;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;B Barrington's nucleus;;;; +276;2276;255;186;134;#FFBA86;DTN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;DTN Dorsal tegmental nucleus;;;; +443;2443;255;186;134;#FFBA86;LTN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;LTN Lateral tegmental nucleus;;;; +629;2629;255;186;134;#FFBA86;PDTg;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PDTg Posterodorsal tegmental nucleus;;;; +626;2626;255;186;134;#FFBA86;PCG;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PCG Pontine central gray;;;; +641;2641;255;186;134;#FFBA86;PG;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PG Pontine gray;;;; +689;2689;255;186;134;#FFBA86;PRNc;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PRNc Pontine reticular nucleus, caudal part;;;; +691;2691;255;186;134;#FFBA86;PRNv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PRNv Pontine reticular nucleus, ventral part;;;; +803;2803;255;186;134;#FFBA86;SG;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;SG Supragenual nucleus;;;; +841;2841;255;186;134;#FFBA86;SSN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;SSN Superior salivatory nucleus;;;; +921;2921;255;186;134;#FFBA86;SUT;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;SUT Supratrigeminal nucleus;;;; +941;2941;255;186;134;#FFBA86;TRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;TRN Tegmental reticular nucleus;;;; +960;2960;255;186;134;#FFBA86;V;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;V Motor nucleus of trigeminal;;;; +594;2594;255;186;134;#FFBA86;P5;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;P5 Peritrigeminal zone;;;; +119;2119;255;186;134;#FFBA86;Acs5;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;Acs5 Accessory trigeminal nucleus;;;; +625;2625;255;186;134;#FFBA86;PC5;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;PC5 Parvicellular motor 5 nucleus;;;; +359;2359;255;186;134;#FFBA86;I5;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-mot Pons, motor related;I5 Intertrigeminal nucleus;;;; +592;2592;255;195;149;#FFC395;P-sat;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;;;;; +216;2216;255;195;149;#FFC395;CS;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;CS Superior central nucleus raphe;;;; +217;2217;255;195;149;#FFC395;CSl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;CS Superior central nucleus raphe;CSl Superior central nucleus raphe, lateral part;;; +218;2218;255;195;149;#FFC395;CSm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;CS Superior central nucleus raphe;CSm Superior central nucleus raphe, medial part;;; +413;2413;255;195;149;#FFC395;LC;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;LC Locus ceruleus;;;; +415;2415;255;195;149;#FFC395;LDT;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;LDT Laterodorsal tegmental nucleus;;;; +531;2531;255;195;149;#FFC395;NI;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;NI Nucleus incertus;;;; +690;2690;255;195;149;#FFC395;PRNr;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;PRNr Pontine reticular nucleus;;;; +760;2760;255;195;149;#FFC395;RPO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;RPO Nucleus raphe pontis;;;; +811;2811;255;195;149;#FFC395;SLC;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;SLC Subceruleus nucleus;;;; +812;2812;255;195;149;#FFC395;SLD;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;P Pons;P-sat Pons, behavioral state related;SLD Sublaterodorsal nucleus;;;; +523;2523;255;155;205;#FF9BCD;MY;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;;;;;; +526;2526;255;165;210;#FFA5D2;MY-sen;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;;;;; +79;2079;255;165;210;#FFA5D2;AP;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;AP Area postrema;;;; +189;2189;255;165;210;#FFA5D2;CN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;CN Cochlear nuclei;;;; +191;2191;255;165;210;#FFA5D2;CNlam;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;CN Cochlear nuclei;CNlam Granular lamina of the cochlear nuclei;;; +192;2192;255;165;210;#FFA5D2;CNspg;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;CN Cochlear nuclei;CNspg Cochlear nucleus, subpedunclular granular region;;; +238;2238;255;165;210;#FFA5D2;DCO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;CN Cochlear nuclei;DCO Dorsal cochlear nucleus;;; +965;2965;255;165;210;#FFA5D2;VCO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;CN Cochlear nuclei;VCO Ventral cochlear nucleus;;; +237;2237;255;165;210;#FFA5D2;DCN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;DCN Dorsal column nuclei;;;; +222;2222;255;165;210;#FFA5D2;CU;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;DCN Dorsal column nuclei;CU Cuneate nucleus;;; +344;2344;255;165;210;#FFA5D2;GR;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;DCN Dorsal column nuclei;GR Gracile nucleus;;; +284;2284;255;165;210;#FFA5D2;ECU;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;ECU External cuneate nucleus;;;; +549;2549;255;165;210;#FFA5D2;NTB;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTB Nucleus of the trapezoid body;;;; +550;2550;255;165;210;#FFA5D2;NTS;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;;;; +551;2551;255;165;210;#FFA5D2;NTSce;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;NTSce Nucleus of the solitary tract, central part;;; +552;2552;255;165;210;#FFA5D2;NTSco;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;NTSco Nucleus of the solitary tract, commissural part;;; +553;2553;255;165;210;#FFA5D2;NTSge;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;NTSge Nucleus of the solitary tract, gelatinous part;;; +554;2554;255;165;210;#FFA5D2;NTSl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;NTSl Nucleus of the solitary tract, lateral part;;; +555;2555;255;165;210;#FFA5D2;NTSm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;NTS Nucleus of the solitary tract;NTSm Nucleus of the solitary tract, medial part;;; +826;2826;255;165;210;#FFA5D2;SPVC;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVC Spinal nucleus of the trigeminal, caudal part;;;; +827;2827;255;165;210;#FFA5D2;SPVI;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVI Spinal nucleus of the trigeminal, interpolar part;;;; +828;2828;255;165;210;#FFA5D2;SPVO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;;;; +829;2829;255;165;210;#FFA5D2;SPVOcdm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;SPVOcdm Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part;;; +830;2830;255;165;210;#FFA5D2;SPVOmdmd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;SPVOmdmd Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone;;; +831;2831;255;165;210;#FFA5D2;SPVOmdmv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;SPVOmdmv Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone;;; +832;2832;255;165;210;#FFA5D2;SPVOrdm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;SPVOrdm Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part;;; +833;2833;255;165;210;#FFA5D2;SPVOvl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;SPVO Spinal nucleus of the trigeminal, oral part;SPVOvl Spinal nucleus of the trigeminal, oral part, ventrolateral part;;; +735;2735;255;165;210;#FFA5D2;Pa5;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;Pa5 Paratrigeminal nucleus;;;; +1327;3327;255;165;210;#FFA5D2;z;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sen Medulla, sensory related;z Nucleus z;;;; +524;2524;255;179;217;#FFB3D9;MY-mot;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;;;;; +968;2968;255;179;217;#FFB3D9;VI;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VI Abducens nucleus;;;; +23;2023;255;179;217;#FFB3D9;ACVI;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;ACVI Accessory abducens nucleus;;;; +969;2969;255;179;217;#FFB3D9;VII;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VII Facial motor nucleus;;;; +24;2024;255;179;217;#FFB3D9;ACVII;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;ACVII Accessory facial motor nucleus;;;; +319;2319;255;179;217;#FFB3D9;EV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;EV Efferent vestibular nucleus;;;; +53;2053;255;179;217;#FFB3D9;AMB;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;AMB Nucleus ambiguus;;;; +54;2054;255;179;217;#FFB3D9;AMBd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;AMB Nucleus ambiguus;AMBd Nucleus ambiguus, dorsal division;;; +55;2055;255;179;217;#FFB3D9;AMBv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;AMB Nucleus ambiguus;AMBv Nucleus ambiguus, ventral division;;; +264;2264;255;179;217;#FFB3D9;DMX;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;DMX Dorsal motor nucleus of the vagus nerve;;;; +277;2277;255;179;217;#FFB3D9;ECO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;ECO Efferent cochlear group;;;; +345;2345;255;179;217;#FFB3D9;GRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;GRN Gigantocellular reticular nucleus;;;; +365;2365;255;179;217;#FFB3D9;ICB;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;ICB Infracerebellar nucleus;;;; +386;2386;255;179;217;#FFB3D9;IO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;IO Inferior olivary complex;;;; +398;2398;255;179;217;#FFB3D9;IRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;IRN Intermediate reticular nucleus;;;; +399;2399;255;179;217;#FFB3D9;ISN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;ISN Inferior salivatory nucleus;;;; +425;2425;255;179;217;#FFB3D9;LIN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;LIN Linear nucleus of the medulla;;;; +433;2433;255;179;217;#FFB3D9;LRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;LRN Lateral reticular nucleus;;;; +434;2434;255;179;217;#FFB3D9;LRNm;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;LRN Lateral reticular nucleus;LRNm Lateral reticular nucleus, magnocellular part;;; +435;2435;255;179;217;#FFB3D9;LRNp;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;LRN Lateral reticular nucleus;LRNp Lateral reticular nucleus, parvicellular part;;; +447;2447;255;179;217;#FFB3D9;MARN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;MARN Magnocellular reticular nucleus;;;; +454;2454;255;179;217;#FFB3D9;MDRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;MDRN Medullary reticular nucleus;;;; +455;2455;255;179;217;#FFB3D9;MDRNd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;MDRN Medullary reticular nucleus;MDRNd Medullary reticular nucleus, dorsal part;;; +456;2456;255;179;217;#FFB3D9;MDRNv;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;MDRN Medullary reticular nucleus;MDRNv Medullary reticular nucleus, ventral part;;; +611;2611;255;179;217;#FFB3D9;PARN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PARN Parvicellular reticular nucleus;;;; +612;2612;255;179;217;#FFB3D9;PAS;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PAS Parasolitary nucleus;;;; +642;2642;255;179;217;#FFB3D9;PGRN;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PGRN Paragigantocellular reticular nucleus;;;; +643;2643;255;179;217;#FFB3D9;PGRNd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PGRN Paragigantocellular reticular nucleus;PGRNd Paragigantocellular reticular nucleus, dorsal part;;; +644;2644;255;179;217;#FFB3D9;PGRNl;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PGRN Paragigantocellular reticular nucleus;PGRNl Paragigantocellular reticular nucleus, lateral part;;; +646;2646;255;179;217;#FFB3D9;PHY;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PHY Perihypoglossal nuclei;;;; +532;2532;255;179;217;#FFB3D9;NIS;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PHY Perihypoglossal nuclei;NIS Nucleus intercalatus;;; +548;2548;255;179;217;#FFB3D9;NR;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PHY Perihypoglossal nuclei;NR Nucleus of Roller;;; +692;2692;255;179;217;#FFB3D9;PRP;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PHY Perihypoglossal nuclei;PRP Nucleus prepositus;;; +662;2662;255;179;217;#FFB3D9;PMR;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PMR Paramedian reticular nucleus;;;; +676;2676;255;179;217;#FFB3D9;PPY;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PPY Parapyramidal nucleus;;;; +677;2677;255;179;217;#FFB3D9;PPYd;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PPY Parapyramidal nucleus;PPYd Parapyramidal nucleus, deep part;;; +678;2678;255;179;217;#FFB3D9;PPYs;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;PPY Parapyramidal nucleus;PPYs Parapyramidal nucleus, superficial part;;; +1101;3101;255;179;217;#FFB3D9;VNC;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VNC Vestibular nuclei;;;; +412;2412;255;179;217;#FFB3D9;LAV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VNC Vestibular nuclei;LAV Lateral vestibular nucleus;;; +522;2522;255;179;217;#FFB3D9;MV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VNC Vestibular nuclei;MV Medial vestibular nucleus;;; +825;2825;255;179;217;#FFB3D9;SPIV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VNC Vestibular nuclei;SPIV Spinal vestibular nucleus;;; +922;2922;255;179;217;#FFB3D9;SUV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;VNC Vestibular nuclei;SUV Superior vestibular nucleus;;; +1325;3325;255;179;217;#FFB3D9;x;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;x Nucleus x;;;; +1112;3112;255;179;217;#FFB3D9;XII;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;XII Hypoglossal nucleus;;;; +1326;3326;255;179;217;#FFB3D9;y;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;y Nucleus y;;;; +385;2385;255;179;217;#FFB3D9;INV;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-mot Medulla, motor related;INV Interstitial nucleus of the vestibular nerve;;;; +525;2525;255;198;226;#FFC6E2;MY-sat;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sat Medulla, behavioral state related;;;;; +755;2755;255;198;226;#FFC6E2;RM;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sat Medulla, behavioral state related;RM Nucleus raphe magnus;;;; +758;2758;255;198;226;#FFC6E2;RPA;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sat Medulla, behavioral state related;RPA Nucleus raphe pallidus;;;; +757;2757;255;198;226;#FFC6E2;RO;grey Basic cell groups and regions;BS Brain stem;HB Hindbrain;MY Medulla;MY-sat Medulla, behavioral state related;RO Nucleus raphe obscurus;;;; +165;2165;240;240;128;#F0F080;CB;grey Basic cell groups and regions;Cerebellum;;;;;;;; +167;2167;240;240;128;#F0F080;CBX;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;;;;;;; +169;2169;255;252;145;#FFFC91;CBXmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;CBXmo Cerebellar cortex, molecular layer;;;;;; +170;2170;255;252;145;#FFFC91;CBXpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;CBXpu Cerebellar cortex, Purkinje layer;;;;;; +168;2168;236;231;84;#ECE754;CBXgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;CBXgr Cerebellar cortex, granular layer;;;;;; +967;2967;255;252;145;#FFFC91;VERM;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;;;;;; +426;2426;255;252;145;#FFFC91;LING;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;LING Lingula (I);;;;; +428;2428;255;252;145;#FFFC91;LINGmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;LING Lingula (I);LINGmo Lingula (I), molecular layer;;;; +429;2429;255;252;145;#FFFC91;LINGpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;LING Lingula (I);LINGpu Lingula (I), Purkinje layer;;;; +427;2427;236;231;84;#ECE754;LINGgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;LING Lingula (I);LINGgr Lingula (I), granular layer;;;; +175;2175;255;252;145;#FFFC91;CENT;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;;;;; +176;2176;255;252;145;#FFFC91;CENT2;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT2 Lobule II;;;; +178;2178;255;252;145;#FFFC91;CENT2mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT2 Lobule II;CENT2mo Lobule II, molecular layer;;; +179;2179;255;252;145;#FFFC91;CENT2pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT2 Lobule II;CENT2pu Lobule II, Purkinje layer;;; +177;2177;236;231;84;#ECE754;CENT2gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT2 Lobule II;CENT2gr Lobule II, granular layer;;; +180;2180;255;252;145;#FFFC91;CENT3;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT3 Lobule III;;;; +182;2182;255;252;145;#FFFC91;CENT3mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT3 Lobule III;CENT3mo Lobule III, molecular layer;;; +183;2183;255;252;145;#FFFC91;CENT3pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT3 Lobule III;CENT3pu Lobule III, Purkinje layer;;; +181;2181;236;231;84;#ECE754;CENT3gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CENT Central lobule;CENT3 Lobule III;CENT3gr Lobule III, granular layer;;; +223;2223;255;252;145;#FFFC91;CUL;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;;;;; +224;2224;255;252;145;#FFFC91;CUL4;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4 Lobule IV;;;; +230;2230;255;252;145;#FFFC91;CUL4mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4 Lobule IV;CUL4mo Lobule IV, molecular layer;;; +231;2231;255;252;145;#FFFC91;CUL4pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4 Lobule IV;CUL4pu Lobule IV, Purkinje layer;;; +229;2229;236;231;84;#ECE754;CUL4gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4 Lobule IV;CUL4gr Lobule IV, granular layer;;; +232;2232;255;252;145;#FFFC91;CUL5;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL5 Lobule V;;;; +234;2234;255;252;145;#FFFC91;CUL5mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL5 Lobule V;CUL5mo Lobule V, molecular layer;;; +235;2235;255;252;145;#FFFC91;CUL5pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL5 Lobule V;CUL5pu Lobule V, Purkinje layer;;; +233;2233;236;231;84;#ECE754;CUL5gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL5 Lobule V;CUL5gr Lobule V, granular layer;;; +225;2225;255;252;145;#FFFC91;CUL4, 5;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4, 5 Lobules IV-V;;;; +227;2227;255;252;145;#FFFC91;CUL4, 5mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4, 5 Lobules IV-V;CUL4, 5mo Lobules IV-V, molecular layer;;; +228;2228;255;252;145;#FFFC91;CUL4, 5pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4, 5 Lobules IV-V;CUL4, 5pu Lobules IV-V, Purkinje layer;;; +226;2226;236;231;84;#ECE754;CUL4, 5gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;CUL Culmen;CUL4, 5 Lobules IV-V;CUL4, 5gr Lobules IV-V, granular layer;;; +239;2239;255;252;145;#FFFC91;DEC;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;DEC Declive (VI);;;;; +241;2241;255;252;145;#FFFC91;DECmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;DEC Declive (VI);DECmo Declive (VI), molecular layer;;;; +242;2242;255;252;145;#FFFC91;DECpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;DEC Declive (VI);DECpu Declive (VI), Purkinje layer;;;; +240;2240;236;231;84;#ECE754;DECgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;DEC Declive (VI);DECgr Declive (VI), granular layer;;;; +329;2329;255;252;145;#FFFC91;FOTU;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;FOTU Folium-tuber vermis (VII);;;;; +331;2331;255;252;145;#FFFC91;FOTUmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;FOTU Folium-tuber vermis (VII);FOTUmo Folium-tuber vermis (VII), molecular layer;;;; +332;2332;255;252;145;#FFFC91;FOTUpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;FOTU Folium-tuber vermis (VII);FOTUpu Folium-tuber vermis (VII), Purkinje layer;;;; +330;2330;236;231;84;#ECE754;FOTUgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;FOTU Folium-tuber vermis (VII);FOTUgr Folium-tuber vermis (VII), granular layer;;;; +730;2730;255;252;145;#FFFC91;PYR;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;PYR Pyramus (VIII);;;;; +732;2732;255;252;145;#FFFC91;PYRmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;PYR Pyramus (VIII);PYRmo Pyramus (VIII), molecular layer;;;; +733;2733;255;252;145;#FFFC91;PYRpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;PYR Pyramus (VIII);PYRpu Pyramus (VIII), Purkinje layer;;;; +731;2731;236;231;84;#ECE754;PYRgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;PYR Pyramus (VIII);PYRgr Pyramus (VIII), granular layer;;;; +956;2956;255;252;145;#FFFC91;UVU;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;UVU Uvula (IX);;;;; +958;2958;255;252;145;#FFFC91;UVUmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;UVU Uvula (IX);UVUmo Uvula (IX), molecular layer;;;; +959;2959;255;252;145;#FFFC91;UVUpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;UVU Uvula (IX);UVUpu Uvula (IX), Purkinje layer;;;; +957;2957;236;231;84;#ECE754;UVUgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;UVU Uvula (IX);UVUgr Uvula (IX), granular layer;;;; +542;2542;255;252;145;#FFFC91;NOD;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;NOD Nodulus (X);;;;; +544;2544;255;252;145;#FFFC91;NODmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;NOD Nodulus (X);NODmo Nodulus (X), molecular layer;;;; +545;2545;255;252;145;#FFFC91;NODpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;NOD Nodulus (X);NODpu Nodulus (X), Purkinje layer;;;; +543;2543;236;231;84;#ECE754;NODgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;VERM Vermal regions;NOD Nodulus (X);NODgr Nodulus (X), granular layer;;;; +355;2355;255;252;145;#FFFC91;HEM;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;;;;;; +807;2807;255;252;145;#FFFC91;SIM;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;SIM Simple lobule;;;;; +809;2809;255;252;145;#FFFC91;SIMmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;SIM Simple lobule;SIMmo Simple lobule, molecular layer;;;; +810;2810;255;252;145;#FFFC91;SIMpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;SIM Simple lobule;SIMpu Simple lobule, Purkinje layer;;;; +808;2808;236;231;84;#ECE754;SIMgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;SIM Simple lobule;SIMgr Simple lobule, granular layer;;;; +58;2058;255;252;145;#FFFC91;AN;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;;;;; +59;2059;255;252;145;#FFFC91;ANcr1;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr1 Crus 1;;;; +61;2061;255;252;145;#FFFC91;ANcr1mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr1 Crus 2;ANcr1mo Crus 1, molecular layer;;; +62;2062;255;252;145;#FFFC91;ANcr1pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr1 Crus 3;ANcr1pu Crus 1, Purkinje layer;;; +60;2060;236;231;84;#ECE754;ANcr1gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr1 Crus 4;ANcr1gr Crus 1, granular layer;;; +63;2063;255;252;145;#FFFC91;ANcr2;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr2 Crus 2;;;; +65;2065;255;252;145;#FFFC91;ANcr2mo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr2 Crus 3;ANcr2mo Crus 2, molecular layer;;; +66;2066;255;252;145;#FFFC91;ANcr2pu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr2 Crus 4;ANcr2pu Crus 2, Purkinje layer;;; +64;2064;236;231;84;#ECE754;ANcr2gr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;AN Ansiform lobule;ANcr2 Crus 5;ANcr2gr Crus 2, granular layer;;; +685;2685;255;252;145;#FFFC91;PRM;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PRM Paramedian lobule;;;;; +687;2687;255;252;145;#FFFC91;PRMmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PRM Paramedian lobule;PRMmo Paramedian lobule, molecular layer;;;; +688;2688;255;252;145;#FFFC91;PRMpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PRM Paramedian lobule;PRMpu Paramedian lobule, Purkinje layer;;;; +686;2686;236;231;84;#ECE754;PRMgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PRM Paramedian lobule;PRMgr Paramedian lobule, granular layer;;;; +211;2211;255;252;145;#FFFC91;COPY;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;COPY Copula pyramidis;;;;; +213;2213;255;252;145;#FFFC91;COPYmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;COPY Copula pyramidis;COPYmo Copula pyramidis, molecular layer;;;; +214;2214;255;252;145;#FFFC91;COPYpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;COPY Copula pyramidis;COPYpu Copula pyramidis, Purkinje layer;;;; +212;2212;236;231;84;#ECE754;COPYgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;COPY Copula pyramidis;COPYgr Copula pyramidis, granular layer;;;; +637;2637;255;252;145;#FFFC91;PFL;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PFL Paraflocculus;;;;; +639;2639;255;252;145;#FFFC91;PFLmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PFL Paraflocculus;PFLmo Paraflocculus, molecular layer;;;; +640;2640;255;252;145;#FFFC91;PFLpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PFL Paraflocculus;PFLpu Paraflocculus, Purkinje layer;;;; +638;2638;236;231;84;#ECE754;PFLgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;PFL Paraflocculus;PFLgr Paraflocculus, granular layer;;;; +324;2324;255;252;145;#FFFC91;FL;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;FL Flocculus;;;;; +326;2326;255;252;145;#FFFC91;FLmo;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;FL Flocculus;FLmo Flocculus, molecular layer;;;; +327;2327;255;252;145;#FFFC91;FLpu;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;FL Flocculus;FLpu Flocculus, Purkinje layer;;;; +325;2325;236;231;84;#ECE754;FLgr;grey Basic cell groups and regions;Cerebellum;CBX Cerebellar cortex;HEM Hemispheric regions;FL Flocculus;FLgr Flocculus, granular layer;;;; +166;2166;240;240;128;#F0F080;CBN;grey Basic cell groups and regions;Cerebellum;CBN Cerebellar nuclei;;;;;;; +328;2328;255;253;188;#FFFDBC;FN;grey Basic cell groups and regions;Cerebellum;CBN Cerebellar nuclei;FN Fastigial nucleus;;;;;; +387;2387;255;253;188;#FFFDBC;IP;grey Basic cell groups and regions;Cerebellum;CBN Cerebellar nuclei;IP Interposed nucleus;;;;;; +265;2265;255;253;188;#FFFDBC;DN;grey Basic cell groups and regions;Cerebellum;CBN Cerebellar nuclei;DN Dentate nucleus;;;;;; +1110;3110;255;253;188;#FFFDBC;VeCB;grey Basic cell groups and regions;Cerebellum;CBN Cerebellar nuclei;VeCB Vestibulocerebellar nucleus;;;;;; +1181;3181;204;204;204;#CCCCCC;fiber_tracts;fiber_tracts fiber tracts;;;;;;;;; +1149;3149;204;204;204;#CCCCCC;cm;fiber_tracts fiber tracts;cm cranial nerves;;;;;;;; +1309;3309;204;204;204;#CCCCCC;tn;fiber_tracts fiber tracts;cm cranial nerves;tn terminal nerve;;;;;;; +1321;3321;204;204;204;#CCCCCC;von;fiber_tracts fiber tracts;cm cranial nerves;von vomeronasal nerve;;;;;;; +405;2405;204;204;204;#CCCCCC;In;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;;;;;;; +1240;3240;204;204;204;#CCCCCC;onl;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;onl olfactory nerve layer of main olfactory bulb;;;;;; +1216;3216;204;204;204;#CCCCCC;lotg;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;lotg lateral olfactory tract, general;;;;;; +1214;3214;204;204;204;#CCCCCC;lot;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;lotg lateral olfactory tract, general;lot lateral olfactory tract, body;;;;; +1215;3215;204;204;204;#CCCCCC;lotd;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;lotg lateral olfactory tract, general;lotd dorsal limb;;;;; +1123;3123;204;204;204;#CCCCCC;aolt;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;lotg lateral olfactory tract, general;aolt accessory olfactory tract;;;;; +1119;3119;204;204;204;#CCCCCC;aco;fiber_tracts fiber tracts;cm cranial nerves;In olfactory nerve;aco anterior commissure, olfactory limb;;;;;; +374;2374;204;204;204;#CCCCCC;IIn;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;;;;;;; +1124;3124;204;204;204;#CCCCCC;aot;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;aot accessory optic tract;;;;;; +1131;3131;204;204;204;#CCCCCC;bsc;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;bsc brachium of the superior colliculus;;;;;; +1153;3153;204;204;204;#CCCCCC;csc;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;csc superior colliculus commissure;;;;;; +1238;3238;204;204;204;#CCCCCC;och;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;och optic chiasm;;;;;; +1241;3241;204;204;204;#CCCCCC;opt;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;opt optic tract;;;;;; +1315;3315;204;204;204;#CCCCCC;ttp;fiber_tracts fiber tracts;cm cranial nerves;IIn optic nerve;ttp tectothalamic pathway;;;;;; +373;2373;204;204;204;#CCCCCC;IIIn;fiber_tracts fiber tracts;cm cranial nerves;IIIn oculomotor nerve;;;;;;; +1228;3228;204;204;204;#CCCCCC;mlf;fiber_tracts fiber tracts;cm cranial nerves;IIIn oculomotor nerve;mlf medial longitudinal fascicle;;;;;; +1244;3244;204;204;204;#CCCCCC;pc;fiber_tracts fiber tracts;cm cranial nerves;IIIn oculomotor nerve;pc posterior commissure;;;;;; +403;2403;204;204;204;#CCCCCC;IVn;fiber_tracts fiber tracts;cm cranial nerves;IVn trochlear nerve;;;;;;; +402;2402;204;204;204;#CCCCCC;IVd;fiber_tracts fiber tracts;cm cranial nerves;IVn trochlear nerve;IVd trochlear nerve decussation;;;;;; +1091;3091;204;204;204;#CCCCCC;VIn;fiber_tracts fiber tracts;cm cranial nerves;VIn abducens nerve;;;;;;; +1111;3111;204;204;204;#CCCCCC;Vn;fiber_tracts fiber tracts;cm cranial nerves;Vn trigeminal nerve;;;;;;; +1229;3229;204;204;204;#CCCCCC;moV;fiber_tracts fiber tracts;cm cranial nerves;Vn trigeminal nerve;moV motor root of the trigeminal nerve;;;;;; +1278;3278;204;204;204;#CCCCCC;sV;fiber_tracts fiber tracts;cm cranial nerves;Vn trigeminal nerve;sV sensory root of the trigeminal nerve;;;;;; +1231;3231;204;204;204;#CCCCCC;mtV;fiber_tracts fiber tracts;cm cranial nerves;Vn trigeminal nerve;sV sensory root of the trigeminal nerve;mtV midbrain tract of the trigeminal nerve;;;;; +1292;3292;204;204;204;#CCCCCC;sptV;fiber_tracts fiber tracts;cm cranial nerves;Vn trigeminal nerve;sV sensory root of the trigeminal nerve;sptV spinal tract of the trigeminal nerve;;;;; +971;2971;204;204;204;#CCCCCC;VIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIn facial nerve;;;;;;; +1199;3199;204;204;204;#CCCCCC;iVIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIn facial nerve;iVIIn intermediate nerve;;;;;; +1189;3189;204;204;204;#CCCCCC;gVIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIn facial nerve;gVIIn genu of the facial nerve;;;;;; +970;2970;204;204;204;#CCCCCC;VIIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;;;;;;; +1160;3160;204;204;204;#CCCCCC;cvb;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cvb efferent cochleovestibular bundle;;;;;; +1317;3317;204;204;204;#CCCCCC;vVIIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;vVIIIn vestibular nerve;;;;;; +1133;3133;204;204;204;#CCCCCC;cVIIIn;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;;;;;; +1307;3307;204;204;204;#CCCCCC;tb;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;tb trapezoid body;;;;; +1201;3201;204;204;204;#CCCCCC;ias;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;ias intermediate acoustic stria;;;;; +1161;3161;204;204;204;#CCCCCC;das;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;das dorsal acoustic stria;;;;; +1213;3213;204;204;204;#CCCCCC;ll;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;ll lateral lemniscus;;;;; +1147;3147;204;204;204;#CCCCCC;cic;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;cic inferior colliculus commissure;;;;; +1130;3130;204;204;204;#CCCCCC;bic;fiber_tracts fiber tracts;cm cranial nerves;VIIIn vestibulocochlear nerve;cVIIIn cochlear nerve;bic brachium of the inferior colliculus;;;;; +404;2404;204;204;204;#CCCCCC;IXn;fiber_tracts fiber tracts;cm cranial nerves;IXn glossopharyngeal nerve;;;;;;; +1116;3116;204;204;204;#CCCCCC;Xn;fiber_tracts fiber tracts;cm cranial nerves;Xn vagus nerve;;;;;;; +1311;3311;204;204;204;#CCCCCC;ts;fiber_tracts fiber tracts;cm cranial nerves;Xn vagus nerve;ts solitary tract;;;;;; +1114;3114;204;204;204;#CCCCCC;XIn;fiber_tracts fiber tracts;cm cranial nerves;XIn accessory spinal nerve;;;;;;; +1113;3113;204;204;204;#CCCCCC;XIIn;fiber_tracts fiber tracts;cm cranial nerves;XIIn hypoglossal nerve;;;;;;; +1322;3322;204;204;204;#CCCCCC;vrt;fiber_tracts fiber tracts;cm cranial nerves;vrt ventral roots;;;;;;; +1169;3169;204;204;204;#CCCCCC;drt;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;;;;;;; +1144;3144;204;204;204;#CCCCCC;cett;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;;;;;; +1167;3167;204;204;204;#CCCCCC;dl;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dl dorsolateral fascicle;;;;; +1164;3164;204;204;204;#CCCCCC;dcm;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dcm dorsal commissure of the spinal cord;;;;; +1318;3318;204;204;204;#CCCCCC;vc;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;vc ventral commissure of the spinal cord;;;;; +1183;3183;204;204;204;#CCCCCC;fpr;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;fpr fasciculus proprius;;;;; +1163;3163;204;204;204;#CCCCCC;dc;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dc dorsal column;;;;; +1159;3159;204;204;204;#CCCCCC;cuf;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dc dorsal column;cuf cuneate fascicle;;;; +1191;3191;204;204;204;#CCCCCC;grf;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dc dorsal column;grf gracile fascicle;;;; +1200;3200;204;204;204;#CCCCCC;iaf;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;dc dorsal column;iaf internal arcuate fibers;;;; +1227;3227;204;204;204;#CCCCCC;ml;fiber_tracts fiber tracts;cm cranial nerves;drt dorsal roots;cett cervicothalamic tract;ml medial lemniscus;;;;; +1294;3294;204;204;204;#CCCCCC;sst;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;;;;;;; +1300;3300;204;204;204;#CCCCCC;sttl;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;sttl lateral spinothalamic tract;;;;;; +1301;3301;204;204;204;#CCCCCC;sttv;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;sttv ventral spinothalamic tract;;;;;; +1280;3280;204;204;204;#CCCCCC;scrt;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;scrt spinocervical tract;;;;;; +1291;3291;204;204;204;#CCCCCC;sop;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;sop spino-olivary pathway;;;;;; +1293;3293;204;204;204;#CCCCCC;srp;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;srp spinoreticular pathway;;;;;; +1306;3306;204;204;204;#CCCCCC;svp;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;svp spinovestibular pathway;;;;;; +1299;3299;204;204;204;#CCCCCC;stp;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;stp spinotectal pathway;;;;;; +1286;3286;204;204;204;#CCCCCC;shp;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;shp spinohypothalamic pathway;;;;;; +1297;3297;204;204;204;#CCCCCC;step;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;step spinotelenchephalic pathway;;;;;; +1198;3198;204;204;204;#CCCCCC;hht;fiber_tracts fiber tracts;cm cranial nerves;sst spinothalamic tract;step spinotelenchephalic pathway;hht hypothalamohypophysial tract;;;;; +1135;3135;204;204;204;#CCCCCC;cbf;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;;;;;;;; +1134;3134;204;204;204;#CCCCCC;cbc;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbc cerebellar commissure;;;;;;; +1136;3136;204;204;204;#CCCCCC;cbp;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;;;;;;; +1279;3279;204;204;204;#CCCCCC;scp;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;scp superior cerebelar peduncles;;;;;; +1170;3170;204;204;204;#CCCCCC;dscp;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;scp superior cerebelar peduncles;dscp superior cerebellar peduncle decussation;;;;; +1281;3281;204;204;204;#CCCCCC;sct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;scp superior cerebelar peduncles;dscp superior cerebellar peduncle decussation;sct spinocerebellar tract;;;; +1316;3316;204;204;204;#CCCCCC;uf;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;scp superior cerebelar peduncles;uf uncinate fascicle;;;;; +1283;3283;204;204;204;#CCCCCC;sctv;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;scp superior cerebelar peduncles;sctv ventral spinocerebellar tract;;;;; +1217;3217;204;204;204;#CCCCCC;mcp;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;mcp middle cerebellar peduncle;;;;;; +1203;3203;204;204;204;#CCCCCC;icp;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;;;;;; +1282;3282;204;204;204;#CCCCCC;sctd;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;sctd dorsal spinocerebellar tract;;;;; +1143;3143;204;204;204;#CCCCCC;cct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;cct cuneocerebellar tract;;;;; +1209;3209;204;204;204;#CCCCCC;jrb;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;jrb juxtarestiform body;;;;; +1129;3129;204;204;204;#CCCCCC;bct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;bct bulbocerebellar tract;;;;; +1239;3239;204;204;204;#CCCCCC;oct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;bct bulbocerebellar tract;oct olivocerebellar tract;;;; +1267;3267;204;204;204;#CCCCCC;rct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;icp inferior cerebellar peduncle;bct bulbocerebellar tract;rct reticulocerebellar tract;;;; +1308;3308;204;204;204;#CCCCCC;tct;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;cbp cerebellar peduncles;tct trigeminocerebellar tract;;;;;; +1128;3128;204;204;204;#CCCCCC;arb;fiber_tracts fiber tracts;cbf cerebellum related fiber tracts;arb arbor vitae;;;;;;; +1284;3284;204;204;204;#CCCCCC;scwm;fiber_tracts fiber tracts;scwm supra-callosal cerebral white matter;;;;;;;; +1211;3211;204;204;204;#CCCCCC;lfbs;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;;;;;;;; +1138;3138;204;204;204;#CCCCCC;cc;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;;;;;;; +1179;3179;204;204;204;#CCCCCC;fa;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;fa corpus callosum, anterior forceps;;;;;; +1173;3173;204;204;204;#CCCCCC;ec;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;fa corpus callosum, anterior forceps;ec external capsule;;;;; +1174;3174;204;204;204;#CCCCCC;ee;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;ee corpus callosum, extreme capsule;;;;;; +1140;3140;204;204;204;#CCCCCC;ccg;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;ccg genu of corpus callosum;;;;;; +1182;3182;204;204;204;#CCCCCC;fp;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;fp corpus callosum, posterior forceps;;;;;; +1141;3141;204;204;204;#CCCCCC;ccr;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;ccr corpus callosum, rostrum;;;;;; +1139;3139;204;204;204;#CCCCCC;ccb;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;ccb corpus callosum, body;;;;;; +1142;3142;204;204;204;#CCCCCC;ccs;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cc corpus callosum;ccs corpus callosum, splenium;;;;;; +1154;3154;204;204;204;#CCCCCC;cst;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;;;;;;; +1205;3205;204;204;204;#CCCCCC;int;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;int internal capsule;;;;;; +1150;3150;204;204;204;#CCCCCC;cpd;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cpd cerebal peduncle;;;;;; +1158;3158;204;204;204;#CCCCCC;cte;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cte corticotectal tract;;;;;; +1152;3152;204;204;204;#CCCCCC;crt;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;crt corticorubral tract;;;;;; +1151;3151;204;204;204;#CCCCCC;cpt;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cpt corticopontine tract;;;;;; +1137;3137;204;204;204;#CCCCCC;cbt;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cbt corticobulbar tract;;;;;; +1265;3265;204;204;204;#CCCCCC;py;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;py pyramid;;;;;; +1266;3266;204;204;204;#CCCCCC;pyd;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;pyd pyramidal decussation;;;;;; +1155;3155;204;204;204;#CCCCCC;cstc;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cstc corticospinal tract, crossed;;;;;; +1156;3156;204;204;204;#CCCCCC;cstu;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;cst corticospinal tract;cstu corticospinal tract, uncrossed;;;;;; +1212;3212;204;204;204;#CCCCCC;lfbst;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;;;;;;; +1176;3176;204;204;204;#CCCCCC;em;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;em external medullary lamina of the thalamus;;;;;; +1204;3204;204;204;204;#CCCCCC;im;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;im internal medullary lamina of the thalamus;;;;;; +1232;3232;204;204;204;#CCCCCC;mtc;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;mtc middle thalamic commissure;;;;;; +1310;3310;204;204;204;#CCCCCC;tp;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;tp thalamic peduncles;;;;;; +1242;3242;204;204;204;#CCCCCC;or;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;or optic radiation;;;;;; +1127;3127;204;204;204;#CCCCCC;ar;fiber_tracts fiber tracts;lfbs lateral forebrain bundle system;lfbst thalamus related;ar auditory radiation;;;;;; +1177;3177;204;204;204;#CCCCCC;eps;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;;;;;;;; +1178;3178;204;204;204;#CCCCCC;epsc;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;epsc cerebral nuclei related;;;;;;; +1243;3243;204;204;204;#CCCCCC;pap;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;epsc cerebral nuclei related;pap pallidothalamic pathway;;;;;; +1236;3236;204;204;204;#CCCCCC;nst;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;epsc cerebral nuclei related;nst nigrostriatal tract;;;;;; +1237;3237;204;204;204;#CCCCCC;ntt;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;epsc cerebral nuclei related;ntt nigrothalamic fibers;;;;;; +1262;3262;204;204;204;#CCCCCC;ptf;fiber_tracts fiber tracts;eps extrapyramidal fiber systems;epsc cerebral nuclei related;ptf pallidotegmental fascicle;;;;;; +1290;3290;204;204;204;#CCCCCC;snp;fiber_tracts fiber tracts;eps 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+1146;3146;170;170;170;#AAAAAA;chpl;VS ventricular systems;VL lateral ventricle;chfl choroid fissure;;;;;;; +401;2401;170;170;170;#AAAAAA;IVF;VS ventricular systems;IVF interventricular foramen;;;;;;;; +961;2961;170;170;170;#AAAAAA;V3;VS ventricular systems;V3 third ventricle;;;;;;;; +82;2082;170;170;170;#AAAAAA;AQ;VS ventricular systems;AQ cerebral aqueduct;;;;;;;; +962;2962;170;170;170;#AAAAAA;V4;VS ventricular systems;V4 fourth ventricle;;;;;;;; +963;2963;170;170;170;#AAAAAA;V4r;VS ventricular systems;V4 fourth ventricle;V4r lateral recess;;;;;;; +1132;3132;170;170;170;#AAAAAA;c;VS ventricular systems;c central canal, spinal cord-medulla;;;;;;;; +1192;3192;170;170;170;#AAAAAA;grv;grv grooves;;;;;;;;; +1193;3193;170;170;170;#AAAAAA;grv_of_CBX;grv grooves;grv of CTX grooves of the cerebral cortex;;;;;;;; +1175;3175;170;170;170;#AAAAAA;eg;grv grooves;grv of CTX grooves of the cerebral cortex;eg endorhinal groove;;;;;;; +1197;3197;170;170;170;#AAAAAA;hf;grv grooves;grv of CTX grooves of the cerebral cortex;hf hippocampal fissure;;;;;;; +1269;3269;170;170;170;#AAAAAA;rf;grv grooves;grv of CTX grooves of the cerebral cortex;rf rhinal fissure;;;;;;; +1270;3270;170;170;170;#AAAAAA;ri;grv grooves;grv of CTX grooves of the cerebral cortex;ri rhinal incisure;;;;;;; +1194;3194;170;170;170;#AAAAAA;grv_of_CTX;grv grooves;grv of CBX grooves of the cerebellar cortex;;;;;;;; +1245;3245;170;170;170;#AAAAAA;pce;grv grooves;grv of CBX grooves of the cerebellar cortex;pce precentral fissure;;;;;;; +1246;3246;170;170;170;#AAAAAA;pcf;grv grooves;grv of CBX grooves of the cerebellar cortex;pcf preculminate fissure;;;;;;; +1260;3260;170;170;170;#AAAAAA;pri;grv grooves;grv of CBX grooves of the cerebellar cortex;pri primary fissure;;;;;;; +1261;3261;170;170;170;#AAAAAA;psf;grv grooves;grv of CBX grooves of the cerebellar cortex;psf posterior superior fissure;;;;;;; +1259;3259;170;170;170;#AAAAAA;ppf;grv grooves;grv of CBX grooves of the cerebellar cortex;ppf prepyramidal fissure;;;;;;; +1285;3285;170;170;170;#AAAAAA;sec;grv grooves;grv of CBX grooves of the cerebellar cortex;sec secondary fissure;;;;;;; +1254;3254;170;170;170;#AAAAAA;plf;grv grooves;grv of CBX grooves of the cerebellar cortex;plf posterolateral fissure;;;;;;; +1235;3235;170;170;170;#AAAAAA;nf;grv grooves;grv of CBX grooves of the cerebellar cortex;nf nodular fissure;;;;;;; +1287;3287;170;170;170;#AAAAAA;sif;grv grooves;grv of CBX grooves of the cerebellar cortex;sif simple fissure;;;;;;; +1202;3202;170;170;170;#AAAAAA;icf;grv grooves;grv of CBX grooves of the cerebellar cortex;icf intercrural fissure;;;;;;; +1126;3126;170;170;170;#AAAAAA;apf;grv grooves;grv of CBX grooves of the cerebellar cortex;apf ansoparamedian fissure;;;;;;; +1206;3206;170;170;170;#AAAAAA;ipf;grv grooves;grv of CBX grooves of the cerebellar cortex;ipf intraparafloccular fissure;;;;;;; +1256;3256;170;170;170;#AAAAAA;pms;grv grooves;grv of CBX grooves of the cerebellar cortex;pms paramedian sulcus;;;;;;; +1248;3248;170;170;170;#AAAAAA;pfs;grv grooves;grv of CBX grooves of the cerebellar cortex;pfs parafloccular sulcus;;;;;;; +392;2392;170;170;170;#AAAAAA;IPF;grv grooves;IPF Interpeduncular fossa;;;;;;;; \ No newline at end of file diff --git a/assets/Docker/Dockerfile b/assets/Docker/Dockerfile new file mode 100644 index 0000000..18237a0 --- /dev/null +++ b/assets/Docker/Dockerfile @@ -0,0 +1,37 @@ +FROM scilus/scilus:2.2.0 + +USER root + +WORKDIR / +RUN --mount=type=cache,sharing=locked,target=/var/cache/apt \ + apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y \ + build-essential gcc bc\ + zlib1g-dev \ + clinfo \ + git \ + libblas-dev \ + libfreetype6-dev \ + liblapack-dev \ + locales \ + imagemagick && \ + rm -rf /var/lib/apt/lists/* + +WORKDIR / + +COPY maskbackgroundnoise /usr/bin/ +COPY ants_generate_iterations.py /ants/bin/ +RUN chmod 777 /ants/bin/ants_generate_iterations.py + +COPY ANO_taxonomy_EC_V4.csv / +RUN chmod 777 /ANO_taxonomy_EC_V4.csv + +COPY mouse_extract_masks.py /usr/local/bin/ +RUN chmod 777 /usr/local/bin/mouse_extract_masks.py + +WORKDIR / +ADD atlas.tar.gz / + +ARG NUMBA_CACHE_DIR +ENV NUMBA_CACHE_DIR="/tmp" + +WORKDIR / diff --git a/assets/Docker/ants_generate_iterations.py b/assets/Docker/ants_generate_iterations.py new file mode 100755 index 0000000..f295e9e --- /dev/null +++ b/assets/Docker/ants_generate_iterations.py @@ -0,0 +1,283 @@ +#!/usr/bin/env python + +# This file generates steps of registration between two images and attempts to compensate +# For ANTs' dependency on the resolution of the file + +# We do this by defining two scales to step over +# blur_scale, which is the real-space steps in blurring we will do +# shrink_scale, which is the subsampling scale that is 1/2 the fwhm blur scale, adjusted for file minimum resolution and max size + +from __future__ import division, print_function + +import argparse +import math +import sys +import re + + +parser = argparse.ArgumentParser( + formatter_class=argparse.ArgumentDefaultsHelpFormatter) + +def check_positive(value): + ivalue = int(value) + if ivalue <= 0: + raise argparse.ArgumentTypeError("%s is an invalid positive int value" % value) + return ivalue + +class SplitArgsComma(argparse.Action): + def __call__(self, parser, namespace, values, option_string=None): + setattr(namespace, self.dest, values.rstrip(',').split(',')) + +parser.add_argument( + '--min', help='minimum resolution of fixed image (mm)', type=float, required=True) +parser.add_argument( + '--max', help='maximum dimension of fixed image features (mm)', type=float, required=True) +parser.add_argument( + '--start-scale', help='set starting sigma blur scale (mm), default calculated from max size', type=float) +parser.add_argument( + '--final-iterations', help='total number of iterations at lowest scale', type=int, default=20) +parser.add_argument( + '--output', help='type of output to generate', default='generic', + choices=['generic', 'affine', 'modelbuild', 'twolevel_dbm', 'multilevel-halving', 'exhaustive-affine', + 'lsq6', 'lsq9', 'lsq12', 'rigid', 'similarity','volgenmodel','affine-plain']) +parser.add_argument('--volgen-iteration', help='for volgenmodel mode, control which iteration is output', default=0, type=int) +parser.add_argument('--step-size', help='step size for fwhm scale space, default 1/2 of voxel size', type=float) +parser.add_argument( + '--convergence', help='set convergence for generated stages', default='1e-6') +parser.add_argument( + '--convergence-window', help='set convergence window for generated stages', default='10') +parser.add_argument( + '--close', help='images are already close, skip large scales of pyramid and translation and rigid steps for affine', action='store_true') +parser.add_argument( + '--rough', help='skip full-resolution iterations for a "rough" alignment', action='store_true') +parser.add_argument( + '--affine-metric', help='which metric to use for affine stages, use comma separated list for multiple image pairs (MI, Mattes, GC, MeanSquares, Demons)', default='Mattes') +parser.add_argument('--reg-pairs', help='number of image pairs for affine output', default=1, type=check_positive) +parser.add_argument('--reg-pairs-weights', help='either a single number for all weights, or a comma separated list of weights equal to reg_pairs', default=['1'], action=SplitArgsComma) +parser.add_argument('--no-masks', help='for linear registration outputs skip repeat stages with masks', action='store_true') + +parser.add_argument('--override-shrink-factors', help='override calculation of optimal image pyramid with specified settings') +parser.add_argument('--override-smoothing-sigmas', help='override calculation of optimal image pyramid with specified settings') +parser.add_argument('--override-convergence', help='override calculation of optimal image pyramid with specified settings') + + +args = parser.parse_args() + +# Setup inital inputs +min_resolution = args.min +max_size = args.max + +affinemetric = args.affine_metric.rstrip(',').split(",") +affineweights= args.reg_pairs_weights + +if len(affinemetric) != args.reg_pairs: + if len(affinemetric) != 1: + sys.exit("Number of metrics provided not equal to the number of image pairs, or 1") + else: + affinemetric = affinemetric * args.reg_pairs + +if len(args.reg_pairs_weights) != args.reg_pairs: + if len(args.reg_pairs_weights) != 1: + sys.exit("Number of affine weights provided not equal to the number of image pairs, or 1") + else: + affineweights = affineweights * args.reg_pairs + + +if (args.output in ['affine', 'multilevel-halving', 'exhaustive-affine','lsq6', 'lsq9', 'lsq12', 'rigid', 'similarity']): + if args.step_size: + step_size = args.step_size + else: + step_size = min_resolution / 2 + if args.start_scale: + starting_sigma = args.start_scale + else: + starting_sigma = max_size / 32 +else: + if args.step_size: + step_size = args.step_size + else: + step_size = min_resolution / 2 + + if args.start_scale: + starting_sigma = args.start_scale + else: + starting_sigma = max_size / 12.3125 / 4 + +if args.close: + starting_sigma = starting_sigma / 2 + +# Step down sigmas by step_size from starting_sigma to zero +sigmas = [ x * step_size for x in list(range(int(round(starting_sigma/step_size)),-1,-1)) ] + +# Shrinks are 2x sigma, with a capped maximum shrink +shrinks = [ round(max(min(max_size/min_resolution/32, 2*x/min_resolution),1)) for x in sigmas ] + +iterations = [ min(500,int(args.final_iterations * 3**(max(0,x - 1)))) for x in shrinks ] + +if args.rough: + to_remove = [i for i in range(len(shrinks)) if shrinks[i]==1] + sigmas = [i for j, i in enumerate(sigmas) if j not in to_remove] + shrinks = [i for j, i in enumerate(shrinks) if j not in to_remove] + iterations = [i for j, i in enumerate(iterations) if j not in to_remove] + sigmas.append('0') + shrinks.append('1') + iterations.append('0') + +# Convert to strings +sigmas = [ str(x) for x in sigmas ] +shrinks = [ str(int(x)) for x in shrinks ] +iterations = [ str(x) for x in iterations ] + +suffix = "mm" + +if args.override_shrink_factors and args.override_smoothing_sigmas and args.override_convergence: + if re.search("mm", args.override_smoothing_sigmas): + suffix="mm" + sigmas = args.override_smoothing_sigmas.strip("mm").split("x") + elif re.search("vox", args.override_smoothing_sigmas): + suffix="vox" + sigmas = args.override_smoothing_sigmas.strip("vox").split("x") + else: + sigmas = args.override_smoothing_sigmas.split("x") + suffix = "" + shrinks = args.override_shrink_factors.split("x") + iterations = args.override_convergence.split("x") + +# Setup transforms +if args.output in ["multilevel-halving", "affine", "lsq12","exhaustive-affine"]: + transforms = ["--transform Translation[ ", + "--transform Rigid[ ", + "--transform Similarity[ ", + "--transform Affine[ "] +elif args.output in ["lsq9","similarity"]: + transforms = ["--transform Translation[ ", + "--transform Rigid[ ", + "--transform Similarity[ ", + "--transform Similarity[ "] +elif args.output in ["lsq6","rigid"]: + transforms = ["--transform Translation[ ", + "--transform Rigid[ ", + "--transform Rigid[ ", + "--transform Rigid[ "] +elif args.output in ['affine-plain']: + transforms = ["--transform Rigid[ ", + "--transform Similarity[ ", + "--transform Affine[ "] +if not args.close: + gradient_steps = [ 0.5, 0.33437015, 0.2236068, 0.1 ] + gradient_steps_repeat = [ 0.5, 0.33437015, 0.14953488, 0.1 ] +else: + gradient_steps = [ 0.1, 0.1, 0.1, 0.1 ] + gradient_steps_repeat = [ 0.1, 0.1, 0.1, 0.1 ] + +masks = ["--masks [ NOMASK,NOMASK ]", + "--masks [ NOMASK,NOMASK ]", + "--masks [ NOMASK,NOMASK ]", + "--masks [ ${fixedmask},${movingmask} ]" ] + +# If defined, repeat a stage previously done with a mask +repeatmask = [ False, + False, + "--masks [ ${fixedmask},${movingmask} ]", + False ] + +if args.output == 'exhaustive-affine' or args.output == 'affine-plain': + for i, transform in enumerate(transforms): + if i == len(transforms) - 1: + print(transform + str(gradient_steps[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},32,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks)), end=' \\\n') + if args.no_masks: + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas),suffix), end=' ') + else: + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas),suffix), end=' \\\n') + print("\t" + masks[i], end=' ') + else: + print(transform + str(gradient_steps[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},32,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks)), end=' \\\n') + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas),suffix), end=' \\\n') + if not args.no_masks: + print("\t" + masks[i], end=' \\\n') + if repeatmask[i]: + print(transform + str(gradient_steps[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},32,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks)), end=' \\\n') + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas),suffix), end=' \\\n') + print("\t" + repeatmask[i], end=' \\\n') + +elif args.output == 'twolevel_dbm': + print("--reg-iterations {}".format("x".join(iterations)), end=' \\\n') + print("--reg-shrinks {}".format("x".join(shrinks)), end=' \\\n') + print("--reg-smoothing {}{}".format("x".join(sigmas),suffix), end=' ') + +elif args.output == 'modelbuild': + print("-q {}".format("x".join(iterations)), end=' \\\n') + print("-f {}".format("x".join(shrinks)), end=' \\\n') + print("-s {}{}".format("x".join(sigmas),suffix), end=' ') + +elif args.output == 'generic': + print("--convergence [ {},{},{} ]".format("x".join(iterations), args.convergence, args.convergence_window), end=' \\\n') + print("--shrink-factors {}".format("x".join(shrinks)), end=' \\\n') + print("--smoothing-sigmas {}{}".format("x".join(sigmas),suffix), end=' ') + +elif args.output == 'volgenmodel': + print("--convergence [ {}x0,{},{} ]".format("x".join(iterations[0:min(args.volgen_iteration+1,len(iterations))]), args.convergence, args.convergence_window), end=' \\\n') + print("--shrink-factors {}x1".format("x".join(shrinks[0:min(args.volgen_iteration+1,len(shrinks))])), end=' \\\n') + print("--smoothing-sigmas {}x0".format("x".join(sigmas[0:min(args.volgen_iteration+1,len(sigmas))]),suffix), end=' ') + +else: + + slicestart = [ 0, + int(round(0.25*len(sigmas))), + int(round(0.50*len(sigmas))), + int(round(0.75*len(sigmas)))] + + sliceend = [ int(round(0.5*len(sigmas))), + int(round(0.75*len(sigmas))), + -2, + -1] + + if args.close: + transforms = transforms[2:] + slicestart = slicestart[0:3] + sliceend = sliceend[1:] + masks = masks[2:] + repeatmask = repeatmask[2:] + + + for i, transform in enumerate(transforms): + if i == len(transforms) - 1: + print(transform + str(gradient_steps[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},64,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations[slicestart[i]:]), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks[slicestart[i]:])), end=' \\\n') + if args.no_masks: + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas[slicestart[i]:]),suffix), end=' ') + else: + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas[slicestart[i]:]),suffix), end=' \\\n') + print("\t" + masks[i], end=' ') + else: + print(transform + str(gradient_steps[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},32,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations[slicestart[i]:max(-slicestart[i]+1,sliceend[i])]), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks[slicestart[i]:max(-slicestart[i]+1,sliceend[i])])), end=' \\\n') + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas[slicestart[i]:max(-slicestart[i]+1,sliceend[i])]),suffix), end=' \\\n') + if not args.no_masks: + print("\t" + masks[i], end=' \\\n') + if repeatmask[i]: + print(transform + str(gradient_steps_repeat[i]) + " ]", end=' \\\n') + for j in range(1, args.reg_pairs+1): + print("\t--metric {affinemetric}[ ${{fixedfile{j}}},${{movingfile{j}}},{affineweights},32,None,1,1 ]".format(j=j, affinemetric=affinemetric[j-1], affineweights=affineweights[j-1]), end=' \\\n') + print("\t--convergence [ {},{},{} ]".format("x".join(iterations[slicestart[i]:max(-slicestart[i]+1,sliceend[i])]), args.convergence, args.convergence_window), end=' \\\n') + print("\t--shrink-factors {}".format("x".join(shrinks[slicestart[i]:max(-slicestart[i]+1,sliceend[i])])), end=' \\\n') + print("\t--smoothing-sigmas {}{}".format("x".join(sigmas[slicestart[i]:max(-slicestart[i]+1,sliceend[i])]),suffix), end=' \\\n') + print("\t" + repeatmask[i], end=' \\\n') diff --git a/assets/Docker/atlas.tar.gz b/assets/Docker/atlas.tar.gz new file mode 100644 index 0000000..498d8c1 Binary files /dev/null and b/assets/Docker/atlas.tar.gz differ diff --git a/assets/Docker/mouse_extract_masks.py b/assets/Docker/mouse_extract_masks.py new file mode 100644 index 0000000..d9665d1 --- /dev/null +++ b/assets/Docker/mouse_extract_masks.py @@ -0,0 +1,92 @@ +#! /usr/bin/env python3 +# -*- coding: utf-8 -*- + +""" +Extract csv files containing only the rows that match the given labels. +Extract a txt file containing the IDS of the labels. +""" + +import argparse +import os +import logging + +import pandas as pd + +from scilpy.io.utils import (add_overwrite_arg, add_verbose_arg, + assert_inputs_exist, + assert_output_dirs_exist_and_empty) + + +def _build_arg_parser(): + p = argparse.ArgumentParser(description=__doc__, + formatter_class=argparse.RawTextHelpFormatter) + + p.add_argument('in_atlas', + help='Path to the ANO registered atlas.') + + p.add_argument('in_labels', nargs='+', + help='Labels to extract (from any Level column).') + + p.add_argument('out_folder', + help='Output folder where to save the masks and csv files.') + + p.add_argument('--merge', action='store_true', + help='Merge the left and right into a single CSV file') + + add_verbose_arg(p) + add_overwrite_arg(p) + return p + + +def main(): + parser = _build_arg_parser() + args = parser.parse_args() + logging.getLogger().setLevel(logging.getLevelName(args.verbose)) + + assert_inputs_exist(parser, args.in_atlas) + assert_output_dirs_exist_and_empty(parser, args, args.out_folder) + + df = pd.read_csv('/ANO_taxonomy_EC_V4.csv', sep=';') + df.fillna("Empty", inplace=True) + for curr_label in args.in_labels: + curr_label_name = curr_label + ' ' + curr_label_found = False + for curr_column in list(df.filter(regex='Level').columns): + logging.info(f'Checking {curr_column}') + if df[curr_column].str.contains(curr_label_name).sum(): + curr_label_found = True + logging.info(f'Found {curr_label_name} in {curr_column}') + curr_df = df[df[curr_column].str.contains(curr_label_name)] + curr_df = curr_df.replace("Empty", "") + if args.merge: + curr_df.to_csv(os.path.join(args.out_folder, + f'{curr_label}.csv'), + sep=';', + index=False) + + curr_ids = list(curr_df['Val_L'].values) + list(curr_df['Val_R'].values) + with open(os.path.join(args.out_folder, f'{curr_label}.txt'), 'w') as f: + f.write(" ".join(str(x) for x in curr_ids)) + else: + for side in ['L', 'R']: + dropped_column = f'Val_{"R" if side == "L" else "L"}' + curr_df.drop(columns=[dropped_column]).to_csv(os.path.join(args.out_folder, + f'{curr_label}_{side}.csv'), + sep=';', + index=False) + curr_ids = list(curr_df[f'Val_{side}'].values) + with open(os.path.join(args.out_folder, f'{curr_label}_{side}.txt'), 'w') as f: + f.write(" ".join(str(x) for x in curr_ids)) + break + + if not curr_label_found: + if args.merge: + with open(os.path.join(args.out_folder, f'{curr_label}.txt'), 'w') as f: + f.write("") + else: + for side in ['L', 'R']: + with open(os.path.join(args.out_folder, f'{curr_label}_{side}.txt'), 'w') as f: + f.write("") + +if __name__ == "__main__": + main()