From bfacd7c03dce282195d1b84631a59dd2813c825f Mon Sep 17 00:00:00 2001 From: DoronHav Date: Tue, 16 Apr 2024 16:54:29 -0400 Subject: [PATCH 1/3] add envi --- .../.ipynb_checkpoints/meta-checkpoint.yaml | 18 ++++++++++++++++++ packages/scENVI/meta.yaml | 18 ++++++++++++++++++ 2 files changed, 36 insertions(+) create mode 100644 packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml create mode 100644 packages/scENVI/meta.yaml diff --git a/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml b/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml new file mode 100644 index 00000000..94a60682 --- /dev/null +++ b/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml @@ -0,0 +1,18 @@ +name: ENVI +description: | + Integration of scRNA-seq and spatial transcriptomics data +project_home: https://github.com/dpeerlab/ENVI +documentation_home: https://github.com/dpeerlab/ENVI/blob/main/README.md +tutorials_home: https://github.com/dpeerlab/ENVI/blob/main/MOp_MERFISH_tutorial.ipynb +publications: + - https://doi.org/10.1038/s41587-024-02193-4 +install: + pypi: scenvi +tags: + - spatial transcriptomics , deep learning, variational inference , gene expression +license: MIT +version: 0.2.13 +authors: + - DoronHav +test_command: | + pip install "." && pytest diff --git a/packages/scENVI/meta.yaml b/packages/scENVI/meta.yaml new file mode 100644 index 00000000..94a60682 --- /dev/null +++ b/packages/scENVI/meta.yaml @@ -0,0 +1,18 @@ +name: ENVI +description: | + Integration of scRNA-seq and spatial transcriptomics data +project_home: https://github.com/dpeerlab/ENVI +documentation_home: https://github.com/dpeerlab/ENVI/blob/main/README.md +tutorials_home: https://github.com/dpeerlab/ENVI/blob/main/MOp_MERFISH_tutorial.ipynb +publications: + - https://doi.org/10.1038/s41587-024-02193-4 +install: + pypi: scenvi +tags: + - spatial transcriptomics , deep learning, variational inference , gene expression +license: MIT +version: 0.2.13 +authors: + - DoronHav +test_command: | + pip install "." && pytest From a409c60b60fc67ba414231d4c1c891b55a78d0d8 Mon Sep 17 00:00:00 2001 From: DoronHav Date: Tue, 16 Apr 2024 16:59:47 -0400 Subject: [PATCH 2/3] fix doi --- packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml | 2 +- packages/scENVI/meta.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml b/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml index 94a60682..7f986e44 100644 --- a/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml +++ b/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml @@ -5,7 +5,7 @@ project_home: https://github.com/dpeerlab/ENVI documentation_home: https://github.com/dpeerlab/ENVI/blob/main/README.md tutorials_home: https://github.com/dpeerlab/ENVI/blob/main/MOp_MERFISH_tutorial.ipynb publications: - - https://doi.org/10.1038/s41587-024-02193-4 + - 10.1038/s41587-024-02193-4 install: pypi: scenvi tags: diff --git a/packages/scENVI/meta.yaml b/packages/scENVI/meta.yaml index 94a60682..7f986e44 100644 --- a/packages/scENVI/meta.yaml +++ b/packages/scENVI/meta.yaml @@ -5,7 +5,7 @@ project_home: https://github.com/dpeerlab/ENVI documentation_home: https://github.com/dpeerlab/ENVI/blob/main/README.md tutorials_home: https://github.com/dpeerlab/ENVI/blob/main/MOp_MERFISH_tutorial.ipynb publications: - - https://doi.org/10.1038/s41587-024-02193-4 + - 10.1038/s41587-024-02193-4 install: pypi: scenvi tags: From cabee34c937a5256c308ba34dd19b14e061ddbf5 Mon Sep 17 00:00:00 2001 From: DoronHav <60754829+DoronHav@users.noreply.github.com> Date: Tue, 16 Apr 2024 17:02:50 -0400 Subject: [PATCH 3/3] Delete packages/scENVI/.ipynb_checkpoints directory --- .../.ipynb_checkpoints/meta-checkpoint.yaml | 18 ------------------ 1 file changed, 18 deletions(-) delete mode 100644 packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml diff --git a/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml b/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml deleted file mode 100644 index 7f986e44..00000000 --- a/packages/scENVI/.ipynb_checkpoints/meta-checkpoint.yaml +++ /dev/null @@ -1,18 +0,0 @@ -name: ENVI -description: | - Integration of scRNA-seq and spatial transcriptomics data -project_home: https://github.com/dpeerlab/ENVI -documentation_home: https://github.com/dpeerlab/ENVI/blob/main/README.md -tutorials_home: https://github.com/dpeerlab/ENVI/blob/main/MOp_MERFISH_tutorial.ipynb -publications: - - 10.1038/s41587-024-02193-4 -install: - pypi: scenvi -tags: - - spatial transcriptomics , deep learning, variational inference , gene expression -license: MIT -version: 0.2.13 -authors: - - DoronHav -test_command: | - pip install "." && pytest