Describe the bug
When giving program a comma separated list of input genes, TargetDB will not generate output after submitting scoring weights. The excel output is empty. Same list of genes will generate correct output when in single mode but would like to run in list mode for ease (correctly running genes in single mode in the first section of log below, the error when running in list mode is the end section in italics).
Screenshots
Desktop (please complete the following information):
- OS: Ubuntu 20.04.6
- Python 3.9.7
- Ryzen Threadripper, 2x A5000 24 Gb.
Error log:
(targetdb) alphafold@Alpha-Wolf:~/targetDB/targetDB$ python3 druggability_report.py
/home/alphafold/targetDB/targetDB/druggability_report.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
[NAME CONVERSION]: Converting gene names into IDs (Uniprot,Ensembl,HGNC)
[NAME CONVERSION]: Conversion Done
/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/xlsxwriter/worksheet.py:1252: UserWarning: Ignoring URL 'https://doi.org/10.1002/2211-5463.13221%20The%20above%20article,%20published%20online%20on%2008%20June%202021%20in%20Wiley%20Online%20Library%20(wileyonlinelibrary.com),%20has%20been%20retracted%20by%20agreement%20between%20the%20authors,%20the%20Editor-in-Chief%20Miguel%20De%20la%20Rosa,%20FEBS%20Press,%20and%20John%20Wiley%20and%20Sons%20Ltd.%20The%20retraction%20has%20been%20agreed%20following%20an%20investigation%20into%20concerns%20raised%20by%20a%20third%20party,%20which%20revealed%20inappropriate%20duplications%20between%20this%20and%20articles%20that%20were%20either%20previously%20published%20or%20published%20later%20in%20the%20same%20year%20%5b1-9%5d.%20Thus,%20the%20editors%20consider%20the%20conclusions%20of%20this%20manuscript%20substantially%20compromised.%20%5b1%5d%20Zheng,%20X.,%20Huang,%20M.,%20Xing,%20L.%20et%20al.%20The%20circRNA%20circSEPT9%20mediated%20by%20E2F1%20and%20EIF4A3%20facilitates%20the%20carcinogenesis%20and%20development%20of%20triple-negative%20breast%20cancer.%20Mol%20Cancer%2019,%2073%20(2020).%20https://doi.org/10.1186/s12943-020-01183-9.%20%5b2%5d%20Li%20X,%20Wang%20H,%20Liu%20Z,%20Abudureyimu%20A.%20CircSETD3%20(Hsa_circ_0000567)%20Suppresses%20Hepatoblastoma%20Pathogenesis%20via%20Targeting%20the%20miR-423-3p/Bcl-2-Interacting%20Mediator%20of%20Cell%20Death%20Axis.%20Front%20Genet.%202021%20Sep%2029;12:724197.%20doi:%2010.3389/fgene.2021.724197.%20PMID:%2034659347;%20PMCID:%20PMC8511783.%20%5b3%5d%20Du%20J,%20Zhong%20H,%20Ma%20B.%20Targeting%20a%20novel%20LncRNA%20SNHG15/miR-451/c-Myc%20signaling%20cascade%20is%20effective%20to%20hamper%20the%20pathogenesis%20of%20breast%20cancer%20(BC)%20in%20vitro%20and%20in%20vivo.%20Cancer%20Cell%20Int.%202021%20Mar%2031;21(1):186.%20doi:%2010.1186/s12935-021-01885-0.%20PMID:%2033952250;%20PMCID:%20PMC8097789.%20%5b4%5d%20Hong%20W,%20Xue%20M,%20Jiang%20J,%20Zhang%20Y,%20Gao%20X.%20Circular%20RNA%20circ-CPA4/%20let-7%20miRNA/PD-L1%20axis%20regulates%20cell%20growth,%20stemness,%20drug%20resistance%20and%20immune%20evasion%20in%20non-small%20cell%20lung%20cancer%20(NSCLC).%20J%20Exp%20Clin%20Cancer%20Res.%202020%20Aug%203;39(1):149.%20doi:%2010.1186/s13046-020-01648-1.%20PMID:%2032746878;%20PMCID:%20PMC7397626.%20%5b5%5d%20Ren%20N,%20Jiang%20T,%20Wang%20C,%20Xie%20S,%20Xing%20Y,%20Piao%20D,%20Zhang%20T,%20Zhu%20Y.%20LncRNA%20ADAMTS9-AS2%20inhibits%20gastric%20cancer%20(GC)%20development%20and%20sensitizes%20chemoresistant%20GC%20cells%20to%20cisplatin%20by%20regulating%20miR-223-3p/NLRP3%20axis.%20Aging%20(Albany%20NY).%202020%20Jun%209;12(11):11025-11,041.%20doi:%2010.18632/aging.103314.%20Epub%202020%20Jun%209.%20PMID:%2032516127;%20PMCID:%20PMC7346038.%20%5b6%5d%20Zheng%20Y,%20Liu%20L,%20Wang%20Y,%20Xiao%20S,%20Mai%20R,%20Zhu%20Z,%20Cao%20Y.%20Glioblastoma%20stem%20cell%20(GSC)-derived%20PD-L1-containing%20exosomes%20activates%20AMPK/ULK1%20pathway%20mediated%20autophagy%20to%20increase%20temozolomide-resistance%20in%20glioblastoma.%20Cell%20Biosci.%202021%20Mar%2031;11(1):63.%20doi:%2010.1186/s13578-021-00575-8.%20PMID:%2033789726;%20PMCID:%20PMC8011168.%20%5b7%5d%20Lin%20H,%20Wang%20J,%20Wang%20T,%20Wu%20J,%20Wang%20P,%20Huo%20X,%20Zhang%20J,%20Pan%20H,%20Fan%20Y.%20The%20LncRNA%20MIR503HG/miR-224-5p/TUSC3%20Signaling%20Cascade%20Suppresses%20Gastric%20Cancer%20Development%20via%20Modulating%20ATF6%20Branch%20of%20Unfolded%20Protein%20Response.%20Front%20Oncol.%202021%20Jul%2026;11:708501.%20doi:%2010.3389/fonc.2021.708501.%20PMID:%2034381729;%20PMCID:%20PMC8352579.%20%5b8%5d%20Lu%20G,%20Li%20Y,%20Ma%20Y,%20Lu%20J,%20Chen%20Y,%20Jiang%20Q,%20Qin%20Q,%20Zhao%20L,%20Huang%20Q,%20Luo%20Z,%20Huang%20S,%20Wei%20Z.%20Long%20noncoding%20RNA%20LINC00511%20contributes%20to%20breast%20cancer%20tumourigenesis%20and%20stemness%20by%20inducing%20the%20miR-185-3p/E2F1/Nanog%20axis.%20J%20Exp%20Clin%20Cancer%20Res.%202018%20Nov%2027;37(1):289.%20doi:%2010.1186/s13046-018-0945-6.%20PMID:%2030482236;%20PMCID:%20PMC6260744.%20%5b9%5d%20Zhao%20Y,%20Zheng%20R,%20Chen%20J,%20Ning%20D.%20CircRNA%20CDR1as/miR-641/HOXA9%20pathway%20regulated%20stemness%20contributes%20to%20cisplatin%20resistance%20in%20non-small%20cell%20lung%20cancer%20(NSCLC).%20Cancer%20Cell%20Int.%202020%20Jul%206;20:289.%20doi:%2010.1186/s12935-020-01390-w.%20PMID:%2032655321;%20PMCID:%20PMC7339514.' with link or location/anchor > 2079 characters since it exceeds Excel's limit for URLS
warn(
[FILE]: File for ULK1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ULK1_O75385.xlsx ]
[FILE]: File for ULK2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ULK2_Q8IYT8.xlsx ]
[FILE]: File for ATG2A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG2A_Q2TAZ0.xlsx ]
[FILE]: File for ATG2B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG2B_Q96BY7.xlsx ]
[FILE]: File for ATG3 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG3_Q9NT62.xlsx ]
[FILE]: File for ATG4B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4B_Q9Y4P1.xlsx ]
[FILE]: File for ATG4A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4A_Q8WYN0.xlsx ]
[FILE]: File for ATG4C generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4C_Q96DT6.xlsx ]
[FILE]: File for ATG4D generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4D_Q86TL0.xlsx ]
[FILE]: File for ATG5 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG5_Q9H1Y0.xlsx ]
[FILE]: File for ATG7 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG7_O95352.xlsx ]
[FILE]: File for GABARAP generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/GABARAP_O95166.xlsx ]
[FILE]: File for ATG9A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG9A_Q7Z3C6.xlsx ]
[FILE]: File for ATG10 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG10_Q9H0Y0.xlsx ]
[FILE]: File for ATG12 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG12_O94817.xlsx ]
[FILE]: File for ATG13 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG13_O75143.xlsx ]
[FILE]: File for ATG14 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG14_Q6ZNE5.xlsx ]
[FILE]: File for ATG16L1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG16L1_Q676U5.xlsx ]
[FILE]: File for RB1CC1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/RB1CC1_Q8TDY2.xlsx ]
[FILE]: File for WIPI2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/WIPI2_Q9Y4P8.xlsx ]
[FILE]: File for WIPI1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/WIPI1_Q5MNZ9.xlsx ]
[FILE]: File for ATG101 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG101_Q9BSB4.xlsx ]
[FILE]: File for PIK3C3 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/PIK3C3_Q8NEB9.xlsx ]
[FILE]: File for PIK3R4 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/PIK3R4_Q99570.xlsx ]
[FILE]: File for VPS33A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS33A_Q96AX1.xlsx ]
[FILE]: File for VPS18 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS18_Q9P253.xlsx ]
[FILE]: File for VPS41 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS41_P49754.xlsx ]
[FILE]: File for VPS8 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS8_Q8N3P4.xlsx ]
[FILE]: File for VPS11 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS11_Q9H270.xlsx ]
[FILE]: File for VPS16 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS16_Q9H269.xlsx ]
[FILE]: File for VIPAS39 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VIPAS39_Q9H9C1.xlsx ]
[FILE]: File for VPS33B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS33B_Q9H267.xlsx ]
[FILE]: File for VPS39 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS39_Q96JC1.xlsx ]
[FILE]: File for NADK2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/NADK2_Q4G0N4.xlsx ]
[NAME CONVERSION]: Converting gene names into IDs (Uniprot,Ensembl,HGNC)
[NAME CONVERSION]: Conversion Done
*Exception in Tkinter callback
Traceback (most recent call last):
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/tkinter/init.py", line 1885, in call
return self.func(args)
File "/home/alphafold/targetDB/targetDB/utils/targetDB_gui.py", line 399, in launch
dr.get_list_excel(self.gene_df,not_found=self.not_found)
File "/home/alphafold/targetDB/targetDB/druggability_report.py", line 907, in get_list_excel
data = data[col_order]
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/frame.py", line 3899, in getitem
indexer = self.columns._get_indexer_strict(key, "columns")[1]
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 6115, in _get_indexer_strict
self._raise_if_missing(keyarr, indexer, axis_name)
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 6179, in _raise_if_missing
raise KeyError(f"{not_found} not in index")
KeyError: "['Connective & soft tissue', 'Respiratory system'] not in index"
Describe the bug
When giving program a comma separated list of input genes, TargetDB will not generate output after submitting scoring weights. The excel output is empty. Same list of genes will generate correct output when in single mode but would like to run in list mode for ease (correctly running genes in single mode in the first section of log below, the error when running in list mode is the end section in italics).
Screenshots
Desktop (please complete the following information):
Error log:
(targetdb) alphafold@Alpha-Wolf:~/targetDB/targetDB$ python3 druggability_report.py
/home/alphafold/targetDB/targetDB/druggability_report.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
[NAME CONVERSION]: Converting gene names into IDs (Uniprot,Ensembl,HGNC)
[NAME CONVERSION]: Conversion Done
/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/xlsxwriter/worksheet.py:1252: UserWarning: Ignoring URL 'https://doi.org/10.1002/2211-5463.13221%20The%20above%20article,%20published%20online%20on%2008%20June%202021%20in%20Wiley%20Online%20Library%20(wileyonlinelibrary.com),%20has%20been%20retracted%20by%20agreement%20between%20the%20authors,%20the%20Editor-in-Chief%20Miguel%20De%20la%20Rosa,%20FEBS%20Press,%20and%20John%20Wiley%20and%20Sons%20Ltd.%20The%20retraction%20has%20been%20agreed%20following%20an%20investigation%20into%20concerns%20raised%20by%20a%20third%20party,%20which%20revealed%20inappropriate%20duplications%20between%20this%20and%20articles%20that%20were%20either%20previously%20published%20or%20published%20later%20in%20the%20same%20year%20%5b1-9%5d.%20Thus,%20the%20editors%20consider%20the%20conclusions%20of%20this%20manuscript%20substantially%20compromised.%20%5b1%5d%20Zheng,%20X.,%20Huang,%20M.,%20Xing,%20L.%20et%20al.%20The%20circRNA%20circSEPT9%20mediated%20by%20E2F1%20and%20EIF4A3%20facilitates%20the%20carcinogenesis%20and%20development%20of%20triple-negative%20breast%20cancer.%20Mol%20Cancer%2019,%2073%20(2020).%20https://doi.org/10.1186/s12943-020-01183-9.%20%5b2%5d%20Li%20X,%20Wang%20H,%20Liu%20Z,%20Abudureyimu%20A.%20CircSETD3%20(Hsa_circ_0000567)%20Suppresses%20Hepatoblastoma%20Pathogenesis%20via%20Targeting%20the%20miR-423-3p/Bcl-2-Interacting%20Mediator%20of%20Cell%20Death%20Axis.%20Front%20Genet.%202021%20Sep%2029;12:724197.%20doi:%2010.3389/fgene.2021.724197.%20PMID:%2034659347;%20PMCID:%20PMC8511783.%20%5b3%5d%20Du%20J,%20Zhong%20H,%20Ma%20B.%20Targeting%20a%20novel%20LncRNA%20SNHG15/miR-451/c-Myc%20signaling%20cascade%20is%20effective%20to%20hamper%20the%20pathogenesis%20of%20breast%20cancer%20(BC)%20in%20vitro%20and%20in%20vivo.%20Cancer%20Cell%20Int.%202021%20Mar%2031;21(1):186.%20doi:%2010.1186/s12935-021-01885-0.%20PMID:%2033952250;%20PMCID:%20PMC8097789.%20%5b4%5d%20Hong%20W,%20Xue%20M,%20Jiang%20J,%20Zhang%20Y,%20Gao%20X.%20Circular%20RNA%20circ-CPA4/%20let-7%20miRNA/PD-L1%20axis%20regulates%20cell%20growth,%20stemness,%20drug%20resistance%20and%20immune%20evasion%20in%20non-small%20cell%20lung%20cancer%20(NSCLC).%20J%20Exp%20Clin%20Cancer%20Res.%202020%20Aug%203;39(1):149.%20doi:%2010.1186/s13046-020-01648-1.%20PMID:%2032746878;%20PMCID:%20PMC7397626.%20%5b5%5d%20Ren%20N,%20Jiang%20T,%20Wang%20C,%20Xie%20S,%20Xing%20Y,%20Piao%20D,%20Zhang%20T,%20Zhu%20Y.%20LncRNA%20ADAMTS9-AS2%20inhibits%20gastric%20cancer%20(GC)%20development%20and%20sensitizes%20chemoresistant%20GC%20cells%20to%20cisplatin%20by%20regulating%20miR-223-3p/NLRP3%20axis.%20Aging%20(Albany%20NY).%202020%20Jun%209;12(11):11025-11,041.%20doi:%2010.18632/aging.103314.%20Epub%202020%20Jun%209.%20PMID:%2032516127;%20PMCID:%20PMC7346038.%20%5b6%5d%20Zheng%20Y,%20Liu%20L,%20Wang%20Y,%20Xiao%20S,%20Mai%20R,%20Zhu%20Z,%20Cao%20Y.%20Glioblastoma%20stem%20cell%20(GSC)-derived%20PD-L1-containing%20exosomes%20activates%20AMPK/ULK1%20pathway%20mediated%20autophagy%20to%20increase%20temozolomide-resistance%20in%20glioblastoma.%20Cell%20Biosci.%202021%20Mar%2031;11(1):63.%20doi:%2010.1186/s13578-021-00575-8.%20PMID:%2033789726;%20PMCID:%20PMC8011168.%20%5b7%5d%20Lin%20H,%20Wang%20J,%20Wang%20T,%20Wu%20J,%20Wang%20P,%20Huo%20X,%20Zhang%20J,%20Pan%20H,%20Fan%20Y.%20The%20LncRNA%20MIR503HG/miR-224-5p/TUSC3%20Signaling%20Cascade%20Suppresses%20Gastric%20Cancer%20Development%20via%20Modulating%20ATF6%20Branch%20of%20Unfolded%20Protein%20Response.%20Front%20Oncol.%202021%20Jul%2026;11:708501.%20doi:%2010.3389/fonc.2021.708501.%20PMID:%2034381729;%20PMCID:%20PMC8352579.%20%5b8%5d%20Lu%20G,%20Li%20Y,%20Ma%20Y,%20Lu%20J,%20Chen%20Y,%20Jiang%20Q,%20Qin%20Q,%20Zhao%20L,%20Huang%20Q,%20Luo%20Z,%20Huang%20S,%20Wei%20Z.%20Long%20noncoding%20RNA%20LINC00511%20contributes%20to%20breast%20cancer%20tumourigenesis%20and%20stemness%20by%20inducing%20the%20miR-185-3p/E2F1/Nanog%20axis.%20J%20Exp%20Clin%20Cancer%20Res.%202018%20Nov%2027;37(1):289.%20doi:%2010.1186/s13046-018-0945-6.%20PMID:%2030482236;%20PMCID:%20PMC6260744.%20%5b9%5d%20Zhao%20Y,%20Zheng%20R,%20Chen%20J,%20Ning%20D.%20CircRNA%20CDR1as/miR-641/HOXA9%20pathway%20regulated%20stemness%20contributes%20to%20cisplatin%20resistance%20in%20non-small%20cell%20lung%20cancer%20(NSCLC).%20Cancer%20Cell%20Int.%202020%20Jul%206;20:289.%20doi:%2010.1186/s12935-020-01390-w.%20PMID:%2032655321;%20PMCID:%20PMC7339514.' with link or location/anchor > 2079 characters since it exceeds Excel's limit for URLS
warn(
[FILE]: File for ULK1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ULK1_O75385.xlsx ]
[FILE]: File for ULK2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ULK2_Q8IYT8.xlsx ]
[FILE]: File for ATG2A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG2A_Q2TAZ0.xlsx ]
[FILE]: File for ATG2B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG2B_Q96BY7.xlsx ]
[FILE]: File for ATG3 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG3_Q9NT62.xlsx ]
[FILE]: File for ATG4B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4B_Q9Y4P1.xlsx ]
[FILE]: File for ATG4A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4A_Q8WYN0.xlsx ]
[FILE]: File for ATG4C generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4C_Q96DT6.xlsx ]
[FILE]: File for ATG4D generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG4D_Q86TL0.xlsx ]
[FILE]: File for ATG5 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG5_Q9H1Y0.xlsx ]
[FILE]: File for ATG7 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG7_O95352.xlsx ]
[FILE]: File for GABARAP generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/GABARAP_O95166.xlsx ]
[FILE]: File for ATG9A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG9A_Q7Z3C6.xlsx ]
[FILE]: File for ATG10 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG10_Q9H0Y0.xlsx ]
[FILE]: File for ATG12 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG12_O94817.xlsx ]
[FILE]: File for ATG13 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG13_O75143.xlsx ]
[FILE]: File for ATG14 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG14_Q6ZNE5.xlsx ]
[FILE]: File for ATG16L1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG16L1_Q676U5.xlsx ]
[FILE]: File for RB1CC1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/RB1CC1_Q8TDY2.xlsx ]
[FILE]: File for WIPI2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/WIPI2_Q9Y4P8.xlsx ]
[FILE]: File for WIPI1 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/WIPI1_Q5MNZ9.xlsx ]
[FILE]: File for ATG101 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/ATG101_Q9BSB4.xlsx ]
[FILE]: File for PIK3C3 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/PIK3C3_Q8NEB9.xlsx ]
[FILE]: File for PIK3R4 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/PIK3R4_Q99570.xlsx ]
[FILE]: File for VPS33A generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS33A_Q96AX1.xlsx ]
[FILE]: File for VPS18 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS18_Q9P253.xlsx ]
[FILE]: File for VPS41 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS41_P49754.xlsx ]
[FILE]: File for VPS8 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS8_Q8N3P4.xlsx ]
[FILE]: File for VPS11 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS11_Q9H270.xlsx ]
[FILE]: File for VPS16 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS16_Q9H269.xlsx ]
[FILE]: File for VIPAS39 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VIPAS39_Q9H9C1.xlsx ]
[FILE]: File for VPS33B generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS33B_Q9H267.xlsx ]
[FILE]: File for VPS39 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/VPS39_Q96JC1.xlsx ]
[FILE]: File for NADK2 generated [ /home/alphafold/targetDB/targetDB/output/nisha/single/NADK2_Q4G0N4.xlsx ]
[NAME CONVERSION]: Converting gene names into IDs (Uniprot,Ensembl,HGNC)
[NAME CONVERSION]: Conversion Done
*Exception in Tkinter callback
Traceback (most recent call last):
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/tkinter/init.py", line 1885, in call
return self.func(args)
File "/home/alphafold/targetDB/targetDB/utils/targetDB_gui.py", line 399, in launch
dr.get_list_excel(self.gene_df,not_found=self.not_found)
File "/home/alphafold/targetDB/targetDB/druggability_report.py", line 907, in get_list_excel
data = data[col_order]
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/frame.py", line 3899, in getitem
indexer = self.columns._get_indexer_strict(key, "columns")[1]
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 6115, in _get_indexer_strict
self._raise_if_missing(keyarr, indexer, axis_name)
File "/home/alphafold/miniconda3/envs/targetdb/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 6179, in _raise_if_missing
raise KeyError(f"{not_found} not in index")
KeyError: "['Connective & soft tissue', 'Respiratory system'] not in index"