TypeError: ppois() got an unexpected keyword argument 'lower_tail'

[AndyLy2Zy]

Dear @sklasfeld,

I got an error when I use the DNAPOS3. Could you please give me some suggestion?

The command "python /home/yilei/biosoftware/DANPOS3/danpos.py dpos 29434_WT1-mono_S21_L999_R1_001.fastq_novoaligned.bam"

The error:

Thank you very much!

Best,
Andy

[sunmeilin2]

I just got the same error,did you solve it?

[AndyLy2Zy]

yep!  This is a bug for the last version. You need to change some code.

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---Original--- From: ***@***.***> Date: Sun, Jun 25, 2023 19:11 PM To: ***@***.***>; Cc: ***@***.******@***.***>; Subject: Re: [sklasfeld/DANPOS3] TypeError: ppois() got an unexpected keywordargument 'lower_tail' (Issue #6) I just got the same error,did you solve it? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sunmeilin2]

could you give me some advice about how to change the code,or maybe I just install another older version ?
Thank you for your help

[AndyLy2Zy]

All you have to do is delete the part where it says "lower_tail=False, log_bool=True".

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---Original--- From: ***@***.***> Date: Mon, Jun 26, 2023 01:57 AM To: ***@***.***>; Cc: ***@***.******@***.***>; Subject: Re: [sklasfeld/DANPOS3] TypeError: ppois() got an unexpected keywordargument 'lower_tail' (Issue #6) could you give me some advice about how to change the code,or maybe I just install another older version ? Thank you for your help — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sunmeilin2]

yep,I solved it,in reads.py,I delect the code thanks meilin

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---- Replied Message ---- | From | ***@***.***> | | Date | 06/27/2023 04:59 | | To | ***@***.***> | | Cc | ***@***.***>***@***.***> | | Subject | Re: [sklasfeld/DANPOS3] TypeError: ppois() got an unexpected keyword argument 'lower_tail' (Issue #6) | All you have to do is delete the part where it says "lower_tail=False, log_bool=True".

---Original--- From: ***@***.***> Date: Mon, Jun 26, 2023 01:57 AM To: ***@***.***>; Cc: ***@***.******@***.***>; Subject: Re: [sklasfeld/DANPOS3] TypeError: ppois() got an unexpected keywordargument 'lower_tail' (Issue #6) could you give me some advice about how to change the code,or maybe I just install another older version ? Thank you for your help — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***> — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: ***@***.***>

[SimHolz]

This bug is addressed in #7