diff --git a/midas/utility.py b/midas/utility.py index ed8d628..708b2c7 100644 --- a/midas/utility.py +++ b/midas/utility.py @@ -126,7 +126,7 @@ def add_executables(args): import subprocess as sp - process = sp.Popen("%s view" % args['samtools'], shell=True, stdout=sp.PIPE, stderr=sp.PIPE) + process = sp.Popen("%s --help" % args['samtools'], shell=True, stdout=sp.PIPE, stderr=sp.PIPE) process.wait() if process.returncode != 0: err = "\nError: could not execute samtools binary: %s\n" % args['samtools']