-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathCV.html
More file actions
1053 lines (959 loc) · 33.5 KB
/
CV.html
File metadata and controls
1053 lines (959 loc) · 33.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<!DOCTYPE html>
<html>
<head>
<!-- Google tag (gtag.js) -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-CWBYQ15S3D"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-CWBYQ15S3D');
</script>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>Curriculum Vitae</title>
<script src="site_libs/header-attrs-2.30/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/flatly.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/jqueryui-1.13.2/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<style type="text/css">code{white-space: pre;}</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<link rel="stylesheet" href="tutorial.css" type="text/css" />
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
details > summary > p:only-child {
display: inline;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark the anchor link active (and if it's in a dropdown, also mark that active)
var dropdown = menuAnchor.closest('li.dropdown');
if (window.bootstrap) { // Bootstrap 4+
menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
} else { // Bootstrap 3
menuAnchor.parent().addClass('active');
dropdown.addClass('active');
}
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "\e259";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "\e258";
font-family: 'Glyphicons Halflings';
border: none;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
<style type="text/css">
#TOC {
margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#TOC {
position: relative;
width: 100%;
}
}
@media print {
.toc-content {
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
float: right;
}
}
.toc-content {
padding-left: 30px;
padding-right: 40px;
}
div.main-container {
max-width: 1200px;
}
div.tocify {
width: 20%;
max-width: 260px;
max-height: 85%;
}
@media (min-width: 768px) and (max-width: 991px) {
div.tocify {
width: 25%;
}
}
@media (max-width: 767px) {
div.tocify {
width: 100%;
max-width: none;
}
}
.tocify ul, .tocify li {
line-height: 20px;
}
.tocify-subheader .tocify-item {
font-size: 0.90em;
}
.tocify .list-group-item {
border-radius: 0px;
}
.tocify-subheader {
display: inline;
}
.tocify-subheader .tocify-item {
font-size: 0.95em;
}
</style>
</head>
<body>
<div class="container-fluid main-container">
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
<div class="navbar navbar-inverse navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Samuel N. Bogan</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="About_me.html">About me</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
Research
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="Aims.html">Topics & aims</a>
</li>
<li>
<a href="Approaches.html">Approaches</a>
</li>
<li>
<a href="Study_syst.html">Study systems</a>
</li>
</ul>
</li>
<li>
<a href="Publications.html">Publications</a>
</li>
<li>
<a href="teaching_training.html">Teaching & training</a>
</li>
<li>
<a href="outreach_service.html">Outreach & service</a>
</li>
<li>
<a href="News.html">News & updates</a>
</li>
<li>
<a href="CV.html">CV</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'G-53GH9PV49T', 'auto');
ga('send', 'pageview');
</script>
<div id="header">
<h1 class="title toc-ignore">Curriculum Vitae</h1>
<h3 class="subtitle">Last updated Dec 12th, 2025</h3>
</div>
<p><br></p>
<div id="samuel-n.-bogan-phd" class="section level2">
<h2>Samuel N. Bogan, PhD</h2>
<p>UC Santa Cruz Coastal Biology Building, 130 McAllister Way, Santa
Cruz, CA 95060<br />
Email: snbogan[at]ucsc.edu</p>
<hr />
</div>
<div id="education-training" class="section level2">
<h2>Education & Training</h2>
<p>2023 – present University of California, Santa Cruz (UCSC), Santa
Cruz, CA<br />
Postdoctoral Researcher Department of Ecology and Evolutionary
Biology<br />
Primary investigator: Dr. Joanna Kelley</p>
<p>2018 – 2023<br />
University of California, Santa Barbara (UCSB), Santa Barbara, CA<br />
PhD Student Department of Ecology, Evolution, and Marine Biology<br />
Thesis: <em>The Evolution of Plastic Responses to Global Change: Studies
in Two Species of Coastal Marine Invertebrates</em><br />
Advisor: Dr. Gretchen Hofmann</p>
<p>2016 – 2018 Sonoma State University (SSU), Rohnert Park, CA<br />
Master of Science Department of Biology<br />
Advisor: Dr. Sean Place</p>
<p>2012 – 2016 Dickinson College, Carlisle, PA<br />
Bachelor of Science, <em>cum laude</em><br />
Thesis Advisor: Dr. Anthony Pires, Department of Biology</p>
<hr />
</div>
<div id="publications" class="section level2">
<h2>Publications</h2>
<p>9. Moosman OW*, Kelley JL, and Bogan SN. 2025. Mitigating Assembly
and Switch Errors in Phased Genomes of Polar Fishes Reveals Haplotype
Diversity in Copy Number of Antifreeze Protein Genes. <em>Heredity</em>.
(accepted; in press)</p>
<p>8. Bogan SN, Surendran N*, Hotaling S, Desvignes T, Bista I, Lins
LSF, Eilertsen MH, Le François NR, Algayer T, Hamilton SL, Hoffmann FG,
and Kelley JL. 2025. Temperature and Pressure Shaped the Evolution of
Antifreeze Proteins in Polar and Deep Sea Zoarcoid Fishes. <em>Molecular
Biology and Evolution</em>: msaf219.</p>
<p>7. Bogan SN, Porat OI*, Meneses MJ*, and Hofmann GE. 2024. Thermal
Plasticity Has Greater Fitness Costs among Thermally Tolerant Genotypes
of <em>Tigriopus californicus</em>. <em>Functional Ecology</em>
38(7):1562–1577.</p>
<p>6. Bogan SN and Yi SV. 2024. Potential Role of DNA Methylation in
Plastic Responses to the Environment across Cells, Organisms, and
Populations. <em>Genome Biology and Evolution</em> 16(2): evae022.</p>
<p>5. Bogan SN, Johns JW, Griffiths JS, Davenport DL, Schaal SM,
Wuitchik SJS, Lotterhos KE, Lou RN, McGirr JA, Downey-Wall AM, Rivera
HE, Roberts SB, Puritz JB, and Silliman KE. 2023. A dynamic web resource
for robust and reproducible genomics in nonmodel species:
marineomics.io. <em>Methods in Ecology and Evolution</em> 14(11):
2709–2716.</p>
<p>4. Bogan SN, Strader ME, and Hofmann GE. 2023. Associations between
DNA Methylation and Gene Expression Depend on Chromatin Accessibility
during Transgenerational Plasticity. <em>BMC Biology</em> 21:149.</p>
<p>3. Bogan SN, Johnson KM, and Hofmann GE. 2020. Changes in Genome-wide
Methylation and Gene Expression in Response to Future pCO₂ Extremes in
the Antarctic Pteropod <em>Limacina helicina antarctica</em>.
<em>Frontiers in Marine Science</em> 6:788.</p>
<p>2. Bogan SN and Place SP. 2019. Accelerated Evolution at Chaperone
Promoters among Antarctic Notothenioid Fishes. <em>BMC Evolutionary
Biology</em> 19:205.</p>
<p>1. Bogan SN, McMahon JB, Pechenik JA, and Pires A. 2019. Legacy of
Multiple Stressors: Ocean Acidification and Nutrition in Larvae and
Juveniles of a Marine Gastropod. <em>Biological Bulletin</em>
236(3):159–173.</p>
<hr />
<div id="preprints-and-works-in-review-or-revision"
class="section level3">
<h3>Preprints and Works in Review or Revision</h3>
<ul>
<li>Bogan SN, Sasaki M, and Kelley JL. Improving evolutionary and
genomic tests of selection on phenotypic plasticity and plasticity-first
evolution. (in revision)<br />
</li>
<li>Bogan SN, Strader ME, and Hofmann GE. 2024. Parental stress alters
the fitness effects and genetic correlation of offspring performance
traits and their gene expression pathways. <em>bioRxiv.</em> (in
revision at <em>Evolution</em>)</li>
<li>Cai T, Bogan SN, Tanner RL, Kelley JL, and Dowd WW. Tissue-specific
plasticity of DNA methylation across intertidal microhabitats in
juvenile mussels (<em>Mytilus californianus</em>). <em>bioRxiv</em>. (in
review)</li>
</ul>
<hr />
</div>
<div id="non-peer-reviewed-literature" class="section level3">
<h3>Non-peer Reviewed Literature</h3>
<ul>
<li>Bogan SN. <a
href="https://marineomics.github.io/DGE_comparison_v2.html">Fitting
Multifactorial Models of Differential Expression</a>, 2022.</li>
</ul>
<p>* = undergraduate mentee</p>
<hr />
</div>
</div>
<div id="academic-honors-awards" class="section level2">
<h2>Academic Honors & Awards</h2>
<ul>
<li>2024 — Young Investigator Travel Award, Society for Molecular
Biology and Evolution<br />
</li>
<li>2023 — Graduate Division Dissertation Fellowship, UC Santa Barbara
Division of Graduate Studies<br />
</li>
<li>2023 — Storke Award for Graduate Student Excellence, UCSB Dept. of
Ecology, Evolution and Marine Biology<br />
</li>
<li>2023 — Finalist: Mary Rice Award for Best Student Oral Presentation,
Society for Integrative and Comparative Biology<br />
</li>
<li>2021 — Worster Award, UCSB Dept. of Ecology, Evolution and Marine
Biology<br />
</li>
<li>2020 — Nomination for Outstanding Teaching Assistant Award, UC Santa
Barbara<br />
</li>
<li>2019 — Nejat B. Ezal Memorial Scholarship, UCSB Dept. of Ecology,
Evolution and Marine Biology<br />
</li>
<li>2018, 2019, 2023 — Block Grant Fellowship, UCSB Dept. of Ecology,
Evolution and Marine Biology<br />
</li>
<li>2018, 2022 — Charlotte Mangum Student Support Award, Society for
Integrative and Comparative Biology<br />
</li>
<li>2016 — Spencer Fullerton Baird Prize in Biology, Dickinson College
(distinction awarded to a graduating biology major)<br />
</li>
<li>2016 — Departmental Honors in Biology, Dickinson College</li>
</ul>
<hr />
</div>
<div id="research-travel-grants" class="section level2">
<h2>Research & Travel Grants</h2>
<p>($56,803 during graduate and postdoctoral career)</p>
<ul>
<li>2020–2024 — Working Group Grant ($32,100; co-written with
Dr. Katherine Silliman), NSF Research Coordinate Network for Evolution
in Changing Seas<br />
</li>
<li>2021 — Grant in Aid of Research ($769), Society for Integrative and
Comparative Biology<br />
</li>
<li>2021 — Worster Summer Research Grant ($6,580), UCSB Dept. of
Ecology, Evolution and Marine Biology<br />
</li>
<li>2020 — Faculty Research Grant ($10,654; co-written with Dr. Gretchen
Hofmann), UCSB Academic Senate<br />
</li>
<li>2019 — Mildred E. Mathias Graduate Student Research Grant ($1,400),
University of California Natural Reserve System<br />
</li>
<li>2018 — NSF Student Travel Grant ($1,800), National Science
Foundation<br />
</li>
<li>2017 — CSU COAST Graduate Student Research Award ($3,000),
California State University<br />
</li>
<li>2019 — Jack Arnold Memorial Student Research Grant ($500), Sonoma
State University</li>
</ul>
<hr />
</div>
<div id="invited-talks-panels" class="section level2">
<h2>Invited Talks & Panels</h2>
<ul>
<li>2024 — Ecological and Genomic Constraints on Environmental
Acclimation and Adaptation by Marine Fauna. Cal Poly San Luis Obispo,
Dept. of Biology (invited seminar).<br />
</li>
<li>2023 — Thermal Plasticity has Greater Fitness Costs among Tolerant
Genotypes. Mary Rice Award Best Student Presentation Session, Society
for Integrative and Comparative Biology Annual Meeting, Austin, TX
(invited talk).<br />
</li>
<li>2022 — One Tool in a Toolkit: Integrative, Genewise Tests of
Associations Between the Environment, DNA Methylation, and Gene
Expression. Congress of Marine Epigenetics, MBL, Woods Hole, MA
(featured speaker).<br />
</li>
<li>2022 — Panel: Synthesis across Genomic Data Sources. Research
Coordination Network for Evolution in Changing Seas Training and
Integration Workshop, Shoals Marine Lab, NH (invited panelist).<br />
</li>
<li>2021 — In situ Environments Induce Maternal Effects on Larval
Performance in the Purple Sea Urchin. Santa Barbara Channel LTER Seminar
(invited talk).<br />
</li>
<li>2018 — New Turns and ‘U-Turns’ in Cis- Trans-regulation of Molecular
Chaperones Among Antarctic Fishes. UC Davis Graduate Group in Population
Biology, Davis, CA (invited seminar).<br />
</li>
<li>2017 — Thermal Adaptation in Antarctic Fishes in a Warming Ocean.
Presentation to the United States National Science Board, McMurdo
Station, Antarctica (invited talk).</li>
</ul>
<hr />
</div>
<div id="selected-conference-presentations" class="section level2">
<h2>Selected Conference Presentations</h2>
<ul>
<li>2025 — Determining Causes and Consequences of Gene Copy Number
Evolution at Genomic and Transcriptomic Levels using Long-read
Sequencing. Plant and Animal Genomes, San Diego, CA (talk).<br />
</li>
<li>2024 — Convergent Structural Variation of Antifreeze Proteins in
Polar and Deep Sea Fishes. Society for Molecular Biology and Evolution,
Puerto Vallarta, Mexico (talk).<br />
</li>
<li>2023 — Thermal plasticity has higher fitness costs in more thermally
tolerant families of Tigriopus californicus. Western Society of
Naturalists, Monterey, CA (talk).<br />
</li>
<li>2023 — Phenome-wide heritability of adaptive plasticity. Society for
Molecular Biology and Evolution, Ferrara, Italy (poster).<br />
</li>
<li>2021 — Gene Regulatory Roles of DNA Methylation During
Transgenerational Plasticity in the Sea Urchin Strongylocentrotus
purpuratus. Society for Integrative and Comparative Biology Annual
Meeting, virtual (talk).<br />
</li>
<li>2020 — Sex-dependent Effects of Local Adaptation on the Thermal
Physiology of Tigriopus californicus Across a Latitudinal Cline. Western
Society of Naturalists, virtual (talk).<br />
</li>
<li>2020 — Changes in Genome-wide Methylation in Response to Ocean
Acidification in the Pteropod Limacina helicina antarctica. AGU Ocean
Sciences Meeting, San Diego, CA (poster).<br />
</li>
<li>2019 — Eco-evolutionary and Molecular Underpinnings of Plasticity in
Thermal Tolerance Among Natural Populations of Tigriopus californicus.
Western Society of Naturalists, Ensenada, Mexico (poster).<br />
</li>
<li>2018 — Regulation of a Lost Inducible Heat Shock Response in
Antarctic Fishes. POLAR2018, Davos, Switzerland (poster).<br />
</li>
<li>2018 — Latent and Interactive Effects of Ocean Acidification and
Nutrition Across the Larva to Juvenile Transition in an Intertidal
Gastropod. Society for Integrative and Comparative Biology Annual
Meeting, San Francisco, CA (talk).<br />
</li>
<li>2016 — Influence of Reduced pH on Growth and Development of the
Marine Gastropod Crepidula fornicata. Society for Integrative and
Comparative Biology Annual Meeting, Portland, OR (poster).</li>
</ul>
<hr />
</div>
<div id="research-appointments" class="section level2">
<h2>Research Appointments</h2>
<ul>
<li>2023 – present — Postdoctoral Researcher, University of California,
Santa Cruz, Dept. of Ecology and Evolutionary Biology, Santa Cruz,
CA<br />
</li>
<li>2018 – 2023 — Graduate Student Researcher, University of California,
Santa Barbara, Dept. of Ecology, Evolution and Marine Biology, Santa
Barbara, CA<br />
</li>
<li>2020 – 2021 — Graduate Student Researcher, Santa Barbara Coastal
LTER<br />
</li>
<li>2017 — Graduate Student Researcher, NSF Office of Polar Programs,
McMurdo Station, Antarctica<br />
</li>
<li>2016 – 2018 — Graduate Student Researcher, Sonoma State University,
Dept. of Biology, CA<br />
</li>
<li>2015 — Undergraduate Researcher, University of Washington, Friday
Harbor Labs, WA</li>
</ul>
<hr />
</div>
<div id="teaching-appointments-pedagogical-development"
class="section level2">
<h2>Teaching Appointments & Pedagogical Development</h2>
<ul>
<li>2025 – present — Instructor, Northeastern University, Three Seas
Masters in Marine Biology at Friday Harbor Labs, WA
<ul>
<li>Co-teach an annual field course focused on genomic and restoration
approaches for marine conservation.<br />
</li>
<li>Train students in fundamental genomic and wet lab tools for
population genetics.</li>
</ul></li>
<li>2025 — Participant, UCSC Equity-minded Mentorship Certificate
Program
<ul>
<li>Five-session training on inclusive mentorship in STEM.</li>
</ul></li>
<li>2024 – present — Contributor, Resources for Inclusive Evolution
Education Working Group
<ul>
<li>Develop open access lesson plans for evolutionary biology, focusing
on genetics and plasticity.</li>
</ul></li>
<li>2022 — Teaching Assistant, Invertebrate Zoology, UCSB
<ul>
<li>Led labs with live marine invertebrates, covering taxonomy and
anatomy.</li>
</ul></li>
<li>2019 – 2021 — Teaching Assistant, Global Change Biology, UCSB
<ul>
<li>Led discussions on global change biology literature.</li>
</ul></li>
<li>2019 – 2023 — Teaching Assistant, Introductory Biology: The
Diversity of Life, UCSB
<ul>
<li>Led labs on biodiversity across microbial to vertebrate taxa.</li>
</ul></li>
<li>2018 — Teaching Assistant, Physiological Marine Molecular Ecology,
Northeastern University
<ul>
<li>Taught graduate field course at Friday Harbor Labs.<br />
</li>
<li>Lectures + labs on physiology and stress responses.</li>
</ul></li>
<li>2016 – 2018 — Teaching Associate, SSU, Dept. of Biology
<ul>
<li>Led labs for molecular/cellular biology and ecology/evolution.</li>
</ul></li>
<li>2017 — Instructor, EXCEL for Youth Summer Learning Program
<ul>
<li>Developed marine biology curriculum for ages 9–12.</li>
</ul></li>
</ul>
<hr />
</div>
<div id="professional-development" class="section level2">
<h2>Professional Development</h2>
<ul>
<li>2020 – present — Working Group Co-leader, MarineOmics
(marineomics.github.io)<br />
</li>
<li>2022 — RCN-ECS Training and Integration Workshop, Shoals Marine Lab,
NH<br />
</li>
<li>2020 — Virtual Lab Meeting Training Program, University of
Washington (Roberts Lab)<br />
</li>
<li>2019 – 2021 — RCN-ECS Coordinated Readings on marine population
biology and genomics</li>
</ul>
<hr />
</div>
<div id="outreach-service-mentorship" class="section level2">
<h2>Outreach, Service & Mentorship</h2>
<ul>
<li>2025 – present Steering Committee Member, Marine Ecological Genomics
Center, Northeastern University
<ul>
<li>I consult on the operations, aims, and funding strategies of the
research center, which serves to advance the synthesis of genomic data
from marine systems and cryopreserved specimens of the Ocean Genome
Legacy for the study of evolution in our oceans.</li>
</ul></li>
<li>2024 – present Exhibit Development, UC Santa Cruz Seymour Marine
Discovery Center
<ul>
<li>In collaboration with Dr. Joanna Kelley and the UCSC Seymour Center,
we have developed an interactive exhibit with learning outcomes spanning
ages 8-18 focused on interactions between environments, genes, and
traits during the adaptation of fishes to their marine
environments.</li>
</ul></li>
<li>2024 – present Local Outreach, Branciforte Small Schools, Santa
Cruz, CA
<ul>
<li>With teachers at Branciforte Small Schools, I have developed and
taught an interactive lesson for high school students engaging them with
basic concepts in genetics, evolution, and the foundations of gene
annotation using multiple alignment.</li>
</ul></li>
<li>2022 – present Editorial Reviewer, Integrative and Comparative
Biology
<ul>
<li>I annually serve as an editorial reviewer for <em>Integrative and
Comparative Biology</em>’s symposia papers. 2020 – present Peer
Reviewer</li>
<li>I have served as a peer reviewer for <em>Molecular Ecology</em>,
<em>Molecular Ecology Resources</em>, <em>Epigenetics</em>,
<em>Proceedings of the Royal Society B</em>, <em>Evolutionary
Applications</em>, <em>Journal of Molecular Evolution</em>,
<em>Scientific Reports</em>, <em>Journal of Animal Ecology</em>,
<em>Marine Ecology Progress Series</em>, <em>Integrative and Comparative
Biology</em>, <em>National Science Review</em>, <em>Epigenetics
Insights</em>, and <em>Frontiers in Physiology</em>.</li>
</ul></li>
<li>2022 Graduate Mentor, CAMP Summer Research Internship
<ul>
<li>In summer of 2022, I mentored an undergraduate research fellow with
the California Alliance for Minority Participation’s Summer Research
Internship.</li>
</ul></li>
<li>2022 – 2023 Mentor, Society for Integrative and Comparative Biology
<ul>
<li>I have volunteered to mentor an attendee of the upcoming 2023 annual
meeting of the Society for Integrative and Comparative Biology in
Austin, TX.</li>
</ul></li>
<li>2021 – 2022 Graduate Mentor, Worster Award, UCSB Dept. of Ecology,
Evolution, and Marine Biology
<ul>
<li>With funding from UCSB EEMB’s Worster Award, I mentored an
undergraduate researcher during 10 weeks of field and laboratory work in
the summer of 2021 before working with this student on an honors
research project during the 2021 – 2022 academic year.</li>
</ul></li>
<li>2021 Internship Coordinator, MarineOmics Working Group, NSF RCN for
Evolution in Changing Seas
<ul>
<li>In 2021 I funded, constructed, and led an internship for three
undergraduate researchers, three graduate student mentors, and three
faculty advisors representing seven institutions that provided remote
networking opportunities and professional development panel discussions
and taught interns foundational computational methods in genomics.</li>
</ul></li>
<li>2021 Mentor, Western Society of Naturalists Mentorship Program
<ul>
<li>I have volunteered as a mentor for a first-time attendee of the
Western Society of Naturalists’ virtual annual meeting, helping this
student prepare for their first poster presentation and connecting them
with researchers that this student later interviewed with for post-
baccalaureate positions.</li>
</ul></li>
<li>2020 – 2021 President (elected), Graduate Student Advisory
Committee, UCSB Dept. of Ecology, Evolution, and Marine Biology
<ul>
<li>I served as the chair and leader of my department’s graduate student
governance group where we oversaw relations between students and the
department, organized professional development programs, and served as
an interface between UCSB’s graduate division and our graduate student
body.</li>
</ul></li>
<li>2019 – 2020 Department Representative, UCSB Graduate Student
Association
<ul>
<li>I have served as a representative to the university-wide graduate
student association on behalf of students within my department.</li>
</ul></li>
<li>2019 – 2020 Graduate Mentor, UCSB Gorman Scholars Program
<ul>
<li>I mentored an undergraduate researcher to aid in their professional
development and independent research through a competitive scholarship
that aims to broaden participation in STEM.</li>
</ul></li>
<li>2019 – 2020 Treasurer, Graduate Student Advisory Committee, UCSB
Dept. of Ecology, Evolution, and Marine Biology
<ul>
<li>I oversaw financial transactions for functions organized by graduate
students related to scientific training, symposia organization, and
social events.</li>
</ul></li>
<li>2019 – 2020 Volunteer, World Oceans Day, Sea Center, Santa Barbara
<ul>
<li>I have volunteered as a scientific educator for a World Oceans Day
event hosted by the Santa Barbara Natural History Museum’s Sea Center
where I engaged the public on issues facing the world’s oceans and
shared my experience as a scientist.</li>
</ul></li>
<li>2018 – 2022 Volunteer, Family Ultimate Science Experience, UCSB
<ul>
<li>I led monthly experiential learning activities for students and
their families at public middle schools in Santa Bara County that cover
topics in biology, chemistry, engineering, and physics.</li>
</ul></li>
<li>2019 Student Representative, Faculty Hiring Committee, UCSB
<ul>
<li>I served as the student representative in the Dept. of Ecology,
Evolution, and Marine Biology for a hiring committee aiming to recruit a
tenure-track faculty member specializing in genomics.</li>
</ul></li>
<li>2017 Collaborator, Seeker: Group Nine Media
<ul>
<li>I reached out to and collaborated with Seeker, a science education
network, to develop an episode for the series “Science at the Extremes”
focusing on my research group’s fieldwork at McMurdo Station,
Antarctica, resulting in over 780,000 online views.</li>
</ul></li>
<li>2015 – 2016 Student Representative (elected), Dickinson College
Dept. of Biology Planned and organized events for the Dickinson College
Dept. of Biology, including symposia, seminars, and dinners. I also
played an active role in recruitment and tenure selection for biology
faculty.</li>
</ul>
<hr />
</div>
<div id="student-postbaccalaureate-mentees" class="section level2">
<h2>Student & Postbaccalaureate Mentees</h2>
<ul>
<li>2024 – present Tina Cai, Graduate Student Researcher (PhD), UC Santa
Cruz</li>
<li>2024 – present Owen Moosman, Undergraduate Researcher, UC Santa
Cruz</li>
<li>2024 – present Emma Tashi, Undergraduate Researcher, UC Santa
Cruz</li>
<li>2023 – 2024 Nathan Surendran, Undergraduate Researcher and Junior
Research Specialist, UC Santa Cruz</li>
<li>2022 Kelly Castellon, California Alliance for Minority Participation
Summer Research Fellow, UC Santa Barbara</li>
<li>2021 – 2022 Olivia Porat, Worster Fellow, UC Santa Barbara
<ul>
<li>Graduated with distinction and honors</li>
<li>Scientific educator with the San Francisco Bay Marine Science
Institute</li>
</ul></li>
<li>2020 – 2022 Kaitlin Macaranas, RCN-ECS MarineOmics Intern, CSU
Bakersfield
<ul>
<li>NSF Graduate Research Fellow</li>
<li>MSc student at Western Washington University</li>
</ul></li>
<li>2019 – 2020 Michael Meneses, Gorman Research Scholar, UC Santa
Barbara
<ul>
<li>Graduated with honors PhD student at Woods Hole Oceanographic
Institution</li>
</ul></li>
<li>2017 – 2018 Madison Ingraham, Undergraduate Researcher, Sonoma State
University
<ul>
<li>MSc student at Sonoma State University.</li>
</ul></li>
</ul>
<hr />
</div>
<div id="professional-memberships" class="section level2">
<h2>Professional Memberships</h2>
<ul>
<li>Society for Integrative and Comparative Biology (SICB)<br />
</li>
<li>Society for Molecular Biology and Evolution (SMBE)<br />
</li>
<li>Western Society of Naturalists (WSN)<br />
</li>
<li>Research Coordination Network for Evolution in Changing Seas
(RCN-ECS)<br />
</li>
<li>Association for the Sciences of Limnology and Oceanography
(ASLO)</li>
</ul>
<hr />
</div>
<div id="references" class="section level2">
<h2>References</h2>
<p>Dr. Gretchen E. Hofmann<br />
Professor of Ecology, Evolution, and Marine Biology<br />
UC Santa Barbara<br />
Tel: 805-893-6175<br />
Email: <a href="mailto:hofmann@ucsb.edu"
class="email">hofmann@ucsb.edu</a></p>
<p>Dr. Joanna L. Kelley<br />
Associate Professor of Ecology and Evolutionary Biology<br />
UC Santa Cruz<br />
Tel: 831-459-5358<br />
Email: <a href="mailto:jokelley@ucsc.edu"
class="email">jokelley@ucsc.edu</a></p>
<p>Dr. Soojin V. Yi<br />
Professor of Ecology, Evolution, and Marine Biology<br />
UC Santa Barbara<br />
Email: <a href="mailto:soojinyi@ucsb.edu"
class="email">soojinyi@ucsb.edu</a></p>
<p>Dr. Katie E. Lotterhos<br />
Associate Professor of Marine and Environmental Sciences<br />
Northeastern University<br />
Tel: 617-373-2059<br />
Email: <a href="mailto:k.lotterhos@northeastern.edu"
class="email">k.lotterhos@northeastern.edu</a></p>
</div>
</div>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");